Wall clock time and date at job start Tue Mar 31 2020 13:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47376 * 2 1 4 4 O 1.42900 * 109.47009 * 119.99589 * 2 1 3 5 5 C 1.42903 * 113.99820 * 89.99985 * 4 2 1 6 6 H 1.08999 * 110.88442 * 333.87910 * 5 4 2 7 7 C 1.55158 * 111.00396 * 209.99798 * 5 4 2 8 8 C 1.54319 * 102.94322 * 206.42217 * 7 5 4 9 9 N 1.47023 * 107.27107 * 22.19580 * 8 7 5 10 10 C 1.34779 * 125.64895 * 181.01938 * 9 8 7 11 11 O 1.21592 * 120.00056 * 174.86434 * 10 9 8 12 12 C 1.47529 * 120.00005 * 354.86771 * 10 9 8 13 13 C 1.39668 * 120.19320 * 314.81762 * 12 10 9 14 14 C 1.37838 * 119.91489 * 179.97438 * 13 12 10 15 15 C 1.38566 * 120.32438 * 0.02562 * 14 13 12 16 16 C 1.38023 * 120.40614 * 359.71541 * 15 14 13 17 17 C 1.38844 * 120.06761 * 0.55981 * 16 15 14 18 18 O 1.35513 * 120.15924 * 179.71589 * 17 16 15 19 19 C 1.34810 * 117.00351 * 5.21186 * 18 17 16 20 20 H 1.08004 * 120.00284 * 354.91062 * 19 18 17 21 21 C 1.38696 * 120.00235 * 174.91228 * 19 18 17 22 22 N 1.31517 * 120.00043 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 119.99995 * 359.97438 * 21 19 18 24 24 H 1.48503 * 109.46986 * 89.99944 * 23 21 19 25 25 H 1.48495 * 109.47195 * 330.00031 * 23 21 19 26 26 H 1.48499 * 109.47261 * 209.99786 * 23 21 19 27 27 C 1.47425 * 108.70307 * 1.28531 * 9 8 7 28 28 H 1.08994 * 109.46795 * 60.00446 * 1 2 3 29 29 H 1.08997 * 109.47132 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46857 * 300.00194 * 1 2 3 31 31 H 1.09003 * 109.47158 * 239.99580 * 2 1 3 32 32 H 1.08993 * 109.47246 * 180.02562 * 3 2 1 33 33 H 1.09010 * 109.46523 * 299.99883 * 3 2 1 34 34 H 1.08998 * 109.46966 * 59.99368 * 3 2 1 35 35 H 1.09007 * 110.71669 * 88.05983 * 7 5 4 36 36 H 1.09001 * 110.87550 * 324.86246 * 7 5 4 37 37 H 1.09001 * 109.88683 * 262.78054 * 8 7 5 38 38 H 1.09004 * 110.01146 * 141.68203 * 8 7 5 39 39 H 1.07996 * 120.04665 * 359.96579 * 13 12 10 40 40 H 1.08004 * 119.83088 * 180.02562 * 14 13 12 41 41 H 1.08004 * 119.79744 * 179.97438 * 15 14 13 42 42 H 1.07991 * 119.96997 * 180.27983 * 16 15 14 43 43 H 0.97007 * 119.99927 * 180.02562 * 22 21 19 44 44 H 1.08995 * 110.36602 * 94.48034 * 27 9 8 45 45 H 1.09001 * 110.36502 * 216.80753 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.2001 -2.0781 0.9887 6 1 1.5516 -2.4631 0.2017 7 6 1.9747 -2.8438 2.3193 8 6 2.8435 -4.1069 2.1428 9 7 3.8639 -3.7968 1.1307 10 6 4.8064 -4.6479 0.6792 11 8 5.5427 -4.3135 -0.2288 12 6 4.9447 -5.9852 1.2866 13 6 4.9269 -6.1311 2.6755 14 6 5.0560 -7.3833 3.2369 15 6 5.2042 -8.4999 2.4299 16 6 5.2183 -8.3717 1.0557 17 6 5.0953 -7.1176 0.4727 18 8 5.1147 -6.9890 -0.8762 19 6 5.1475 -8.1264 -1.5991 20 1 5.2402 -9.0803 -1.1012 21 6 5.0623 -8.0717 -2.9823 22 7 5.0948 -9.1813 -3.6876 23 14 4.9012 -6.4220 -3.8437 24 1 6.2531 -5.8916 -4.1541 25 1 4.1870 -5.4684 -2.9573 26 1 4.1356 -6.5944 -5.1043 27 6 3.6894 -2.3989 0.6963 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8900 32 1 3.1301 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8901 34 1 1.6767 1.9563 0.8899 35 1 0.9245 -3.1114 2.4371 36 1 2.3187 -2.2547 3.1695 37 1 2.2251 -4.9378 1.8031 38 1 3.3239 -4.3641 3.0868 39 1 4.8122 -5.2639 3.3089 40 1 5.0416 -7.4946 4.3111 41 1 5.3051 -9.4770 2.8788 42 1 5.3297 -9.2472 0.4333 43 1 5.0356 -9.1430 -4.6551 44 1 4.3414 -1.7395 1.2692 45 1 3.8951 -2.3045 -0.3699 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843613312.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:24 Heat of formation + Delta-G solvation = -75.576848 kcal Electronic energy + Delta-G solvation = -27186.972567 eV Core-core repulsion = 23363.631015 eV Total energy + Delta-G solvation = -3823.341551 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.19006 -39.21053 -38.15959 -36.55951 -36.41900 -32.98107 -32.48975 -31.15863 -30.20872 -29.25388 -28.33956 -27.50144 -25.36835 -24.23746 -22.31637 -21.61586 -21.48018 -21.09946 -19.43846 -18.02757 -17.55479 -17.37703 -16.60091 -15.54074 -15.36702 -15.17362 -15.03386 -14.75600 -14.46829 -14.00848 -13.79974 -13.66284 -13.52350 -13.36680 -13.24186 -12.81021 -12.55108 -12.49851 -12.46223 -12.34739 -12.23999 -11.99956 -11.70777 -11.44157 -11.36952 -11.25492 -11.08695 -10.83815 -10.80086 -10.65864 -10.21452 -9.79484 -9.65214 -9.23099 -8.93660 -8.46708 -8.31457 -7.51662 -6.50339 -4.16253 1.64294 2.15613 2.99483 3.23701 3.30834 3.35476 3.49626 3.59562 4.25028 4.33298 4.38912 4.51707 4.65273 4.67865 4.76449 4.85431 4.93995 5.03235 5.05657 5.17388 5.25346 5.31525 5.37861 5.46488 5.53922 5.57485 5.60563 5.63127 5.70364 5.79878 5.82686 5.88602 5.92067 5.93618 5.97081 6.05461 6.33445 6.45605 6.58763 6.85272 6.98636 7.05799 7.13425 7.45514 7.64797 7.81452 7.92085 8.68058 8.84732 9.46234 10.55606 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.011757 B = 0.004222 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.041571 B = 6630.537834 C = 8435.765126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.077 3.923 3 C -0.149 4.149 4 O -0.366 6.366 5 C 0.075 3.925 6 H 0.080 0.920 7 C -0.127 4.127 8 C 0.103 3.897 9 N -0.623 5.623 10 C 0.591 3.409 11 O -0.523 6.523 12 C -0.216 4.216 13 C -0.044 4.044 14 C -0.215 4.215 15 C -0.054 4.054 16 C -0.224 4.224 17 C 0.199 3.801 18 O -0.187 6.187 19 C -0.394 4.394 20 H 0.110 0.890 21 C 0.071 3.929 22 N -0.870 5.870 23 Si 0.904 3.096 24 H -0.270 1.270 25 H -0.256 1.256 26 H -0.283 1.283 27 C 0.090 3.910 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.118 0.882 40 H 0.113 0.887 41 H 0.114 0.886 42 H 0.139 0.861 43 H 0.282 0.718 44 H 0.073 0.927 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.145 14.333 11.999 20.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.019 3.981 3 C -0.206 4.206 4 O -0.285 6.285 5 C 0.016 3.984 6 H 0.098 0.902 7 C -0.165 4.165 8 C -0.020 4.020 9 N -0.360 5.360 10 C 0.382 3.618 11 O -0.398 6.398 12 C -0.220 4.220 13 C -0.062 4.062 14 C -0.234 4.234 15 C -0.072 4.072 16 C -0.243 4.243 17 C 0.143 3.857 18 O -0.089 6.089 19 C -0.469 4.469 20 H 0.127 0.873 21 C -0.134 4.134 22 N -0.506 5.506 23 Si 0.729 3.271 24 H -0.195 1.195 25 H -0.180 1.180 26 H -0.209 1.209 27 C -0.033 4.033 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.103 0.897 36 H 0.105 0.895 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.136 0.864 40 H 0.131 0.869 41 H 0.132 0.868 42 H 0.156 0.844 43 H 0.092 0.908 44 H 0.091 0.909 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.647 14.643 11.212 20.369 hybrid contribution -0.107 0.222 -0.671 0.715 sum -8.754 14.865 10.541 20.217 Atomic orbital electron populations 1.22311 0.95901 1.02454 1.02529 1.22191 0.93666 0.93947 0.88296 1.21858 1.02002 0.94367 1.02415 1.87934 1.86056 1.19142 1.35342 1.23314 0.95255 0.81665 0.98147 0.90235 1.22738 1.00653 0.95441 0.97641 1.22103 0.89869 0.97396 0.92634 1.48206 1.32735 1.12174 1.42930 1.17897 0.78763 0.83605 0.81494 1.90782 1.43690 1.76719 1.28649 1.18688 1.19181 0.91074 0.93086 1.20801 0.96202 0.97198 0.92031 1.20558 1.11532 0.92487 0.98861 1.20961 0.95181 0.98010 0.93094 1.21261 1.10047 0.97659 0.95300 1.18952 0.90983 0.91957 0.83789 1.83644 1.77778 1.34615 1.12831 1.20862 1.51967 0.84568 0.89509 0.87288 1.24458 0.94980 0.98736 0.95216 1.69629 1.46504 1.26895 1.07618 0.86175 0.79551 0.82906 0.78468 1.19537 1.17981 1.20906 1.22561 0.96228 0.83262 1.01297 0.91654 0.92405 0.91782 0.91898 0.91841 0.91281 0.91822 0.89651 0.89502 0.90946 0.90646 0.86375 0.86890 0.86767 0.84359 0.90816 0.90876 0.90481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.38 9.53 37.16 0.35 -1.02 16 2 C 0.08 0.71 3.18 -26.73 -0.09 0.63 16 3 C -0.15 -1.18 9.56 37.16 0.36 -0.83 16 4 O -0.37 -4.06 9.80 -35.23 -0.35 -4.40 16 5 C 0.08 0.86 3.36 -24.46 -0.08 0.78 16 6 H 0.08 0.90 7.80 -51.93 -0.41 0.50 16 7 C -0.13 -1.25 6.68 -24.90 -0.17 -1.41 16 8 C 0.10 1.27 5.92 -3.07 -0.02 1.25 16 9 N -0.62 -10.31 3.32 -171.61 -0.57 -10.88 16 10 C 0.59 12.62 7.16 -12.47 -0.09 12.53 16 11 O -0.52 -13.38 16.60 -7.31 -0.12 -13.50 16 12 C -0.22 -4.48 5.39 -104.81 -0.56 -5.04 16 13 C -0.04 -0.72 8.42 -39.19 -0.33 -1.05 16 14 C -0.22 -3.33 10.02 -39.61 -0.40 -3.73 16 15 C -0.05 -0.92 10.03 -39.54 -0.40 -1.31 16 16 C -0.22 -4.70 9.16 -39.44 -0.36 -5.06 16 17 C 0.20 4.73 6.63 -38.59 -0.26 4.47 16 18 O -0.19 -5.16 7.52 -11.76 -0.09 -5.25 16 19 C -0.39 -11.24 9.95 30.90 0.31 -10.93 16 20 H 0.11 3.09 5.44 -52.48 -0.29 2.81 16 21 C 0.07 2.04 5.49 -17.52 -0.10 1.94 16 22 N -0.87 -25.15 13.96 55.48 0.77 -24.37 16 23 Si 0.90 23.11 28.62 -169.99 -4.86 18.24 16 24 H -0.27 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.26 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 27 C 0.09 1.30 6.68 -2.41 -0.02 1.28 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.61 7.78 -51.93 -0.40 0.20 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.69 8.14 -51.92 -0.42 0.27 16 36 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.08 0.82 5.75 -51.93 -0.30 0.52 16 39 H 0.12 1.59 6.20 -52.49 -0.33 1.27 16 40 H 0.11 1.39 8.06 -52.48 -0.42 0.97 16 41 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 42 H 0.14 3.01 5.63 -52.49 -0.30 2.72 16 43 H 0.28 7.52 8.31 -40.82 -0.34 7.18 16 44 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 45 H 0.08 1.24 7.99 -51.93 -0.41 0.82 16 LS Contribution 370.73 15.07 5.59 5.59 Total: -1.00 -33.13 370.73 -8.11 -41.24 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -6.64 Total: 0.84 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: -1.84 Total: -7.51 kcal Atomic # 7 Polarization: -35.46 SS G_CDS: 0.20 Total: -35.25 kcal Atomic # 8 Polarization: -22.60 SS G_CDS: -0.55 Total: -23.15 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -4.86 Total: 18.24 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.13 -8.11 -41.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843613312.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.335 kcal (2) G-P(sol) polarization free energy of solvation -33.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds