Wall clock time and date at job start Tue Mar 31 2020 13:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47376 * 2 1 4 4 O 1.42900 * 109.47009 * 119.99589 * 2 1 3 5 5 C 1.42903 * 113.99820 * 89.99985 * 4 2 1 6 6 H 1.08999 * 110.88442 * 333.87910 * 5 4 2 7 7 C 1.55158 * 111.00396 * 209.99798 * 5 4 2 8 8 C 1.54319 * 102.94322 * 206.42217 * 7 5 4 9 9 N 1.47023 * 107.27107 * 22.19580 * 8 7 5 10 10 C 1.34779 * 125.64895 * 181.01938 * 9 8 7 11 11 O 1.21592 * 120.00056 * 174.86434 * 10 9 8 12 12 C 1.47529 * 120.00005 * 354.86771 * 10 9 8 13 13 C 1.39668 * 120.19320 * 314.81762 * 12 10 9 14 14 C 1.37838 * 119.91489 * 179.97438 * 13 12 10 15 15 C 1.38566 * 120.32438 * 0.02562 * 14 13 12 16 16 C 1.38023 * 120.40614 * 359.71541 * 15 14 13 17 17 C 1.38844 * 120.06761 * 0.55981 * 16 15 14 18 18 O 1.35513 * 120.15924 * 179.71589 * 17 16 15 19 19 C 1.34810 * 117.00351 * 5.21186 * 18 17 16 20 20 H 1.08004 * 120.00284 * 354.91062 * 19 18 17 21 21 C 1.38696 * 120.00235 * 174.91228 * 19 18 17 22 22 N 1.31517 * 120.00043 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 119.99995 * 359.97438 * 21 19 18 24 24 H 1.48503 * 109.46986 * 89.99944 * 23 21 19 25 25 H 1.48495 * 109.47195 * 330.00031 * 23 21 19 26 26 H 1.48499 * 109.47261 * 209.99786 * 23 21 19 27 27 C 1.47425 * 108.70307 * 1.28531 * 9 8 7 28 28 H 1.08994 * 109.46795 * 60.00446 * 1 2 3 29 29 H 1.08997 * 109.47132 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46857 * 300.00194 * 1 2 3 31 31 H 1.09003 * 109.47158 * 239.99580 * 2 1 3 32 32 H 1.08993 * 109.47246 * 180.02562 * 3 2 1 33 33 H 1.09010 * 109.46523 * 299.99883 * 3 2 1 34 34 H 1.08998 * 109.46966 * 59.99368 * 3 2 1 35 35 H 1.09007 * 110.71669 * 88.05983 * 7 5 4 36 36 H 1.09001 * 110.87550 * 324.86246 * 7 5 4 37 37 H 1.09001 * 109.88683 * 262.78054 * 8 7 5 38 38 H 1.09004 * 110.01146 * 141.68203 * 8 7 5 39 39 H 1.07996 * 120.04665 * 359.96579 * 13 12 10 40 40 H 1.08004 * 119.83088 * 180.02562 * 14 13 12 41 41 H 1.08004 * 119.79744 * 179.97438 * 15 14 13 42 42 H 1.07991 * 119.96997 * 180.27983 * 16 15 14 43 43 H 0.97007 * 119.99927 * 180.02562 * 22 21 19 44 44 H 1.08995 * 110.36602 * 94.48034 * 27 9 8 45 45 H 1.09001 * 110.36502 * 216.80753 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.2001 -2.0781 0.9887 6 1 1.5516 -2.4631 0.2017 7 6 1.9747 -2.8438 2.3193 8 6 2.8435 -4.1069 2.1428 9 7 3.8639 -3.7968 1.1307 10 6 4.8064 -4.6479 0.6792 11 8 5.5427 -4.3135 -0.2288 12 6 4.9447 -5.9852 1.2866 13 6 4.9269 -6.1311 2.6755 14 6 5.0560 -7.3833 3.2369 15 6 5.2042 -8.4999 2.4299 16 6 5.2183 -8.3717 1.0557 17 6 5.0953 -7.1176 0.4727 18 8 5.1147 -6.9890 -0.8762 19 6 5.1475 -8.1264 -1.5991 20 1 5.2402 -9.0803 -1.1012 21 6 5.0623 -8.0717 -2.9823 22 7 5.0948 -9.1813 -3.6876 23 14 4.9012 -6.4220 -3.8437 24 1 6.2531 -5.8916 -4.1541 25 1 4.1870 -5.4684 -2.9573 26 1 4.1356 -6.5944 -5.1043 27 6 3.6894 -2.3989 0.6963 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8900 32 1 3.1301 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8901 34 1 1.6767 1.9563 0.8899 35 1 0.9245 -3.1114 2.4371 36 1 2.3187 -2.2547 3.1695 37 1 2.2251 -4.9378 1.8031 38 1 3.3239 -4.3641 3.0868 39 1 4.8122 -5.2639 3.3089 40 1 5.0416 -7.4946 4.3111 41 1 5.3051 -9.4770 2.8788 42 1 5.3297 -9.2472 0.4333 43 1 5.0356 -9.1430 -4.6551 44 1 4.3414 -1.7395 1.2692 45 1 3.8951 -2.3045 -0.3699 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000843613312.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:23 Heat of formation + Delta-G solvation = -96.662408 kcal Electronic energy + Delta-G solvation = -27187.886905 eV Core-core repulsion = 23363.631015 eV Total energy + Delta-G solvation = -3824.255890 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.64373 -40.57431 -39.46159 -38.19725 -37.67684 -34.56144 -33.88310 -32.51218 -31.37730 -30.84850 -29.47950 -28.13212 -27.33930 -25.57562 -23.66146 -23.07530 -22.34372 -22.12369 -20.89223 -19.93304 -19.11174 -18.37025 -18.10199 -17.06664 -16.77089 -16.43615 -16.18470 -15.92922 -15.84110 -15.63317 -15.50350 -15.15450 -14.85521 -14.45505 -14.32363 -14.16662 -14.04849 -13.85122 -13.70354 -13.41447 -13.19833 -13.10568 -12.85805 -12.79229 -12.66060 -12.56613 -12.40090 -12.16956 -12.13336 -11.81652 -11.59024 -11.52782 -11.01991 -10.95140 -10.61516 -9.95731 -9.68115 -9.18549 -8.61318 -6.30642 0.11664 0.61377 1.16892 1.23638 1.42020 1.64068 1.88585 2.19018 2.64835 2.69565 2.95342 3.06149 3.32970 3.54672 3.77667 3.90725 3.96495 3.99178 4.12144 4.20750 4.23354 4.25659 4.28633 4.46569 4.51104 4.58195 4.61585 4.73026 4.74498 4.78621 4.87866 4.89745 4.91654 4.98015 5.06522 5.10325 5.24838 5.26805 5.31325 5.33439 5.46370 5.60444 5.67709 5.81575 6.13189 6.20918 6.37667 6.74746 7.10840 7.52367 8.49783 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.011757 B = 0.004222 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.041571 B = 6630.537834 C = 8435.765126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.067 3.933 3 C -0.147 4.147 4 O -0.370 6.370 5 C 0.083 3.917 6 H 0.078 0.922 7 C -0.112 4.112 8 C 0.094 3.906 9 N -0.617 5.617 10 C 0.580 3.420 11 O -0.583 6.583 12 C -0.222 4.222 13 C -0.035 4.035 14 C -0.180 4.180 15 C -0.045 4.045 16 C -0.243 4.243 17 C 0.158 3.842 18 O -0.231 6.231 19 C -0.400 4.400 20 H 0.095 0.905 21 C 0.027 3.973 22 N -0.909 5.909 23 Si 0.955 3.045 24 H -0.276 1.276 25 H -0.282 1.282 26 H -0.256 1.256 27 C 0.084 3.916 28 H 0.077 0.923 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.084 0.916 34 H 0.068 0.932 35 H 0.111 0.889 36 H 0.103 0.897 37 H 0.069 0.931 38 H 0.101 0.899 39 H 0.160 0.840 40 H 0.169 0.831 41 H 0.154 0.846 42 H 0.118 0.882 43 H 0.287 0.713 44 H 0.080 0.920 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.837 15.701 16.367 25.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.010 3.990 3 C -0.204 4.204 4 O -0.288 6.288 5 C 0.024 3.976 6 H 0.096 0.904 7 C -0.149 4.149 8 C -0.027 4.027 9 N -0.352 5.352 10 C 0.371 3.629 11 O -0.463 6.463 12 C -0.226 4.226 13 C -0.053 4.053 14 C -0.198 4.198 15 C -0.063 4.063 16 C -0.262 4.262 17 C 0.106 3.894 18 O -0.137 6.137 19 C -0.476 4.476 20 H 0.113 0.887 21 C -0.173 4.173 22 N -0.549 5.549 23 Si 0.779 3.221 24 H -0.202 1.202 25 H -0.208 1.208 26 H -0.180 1.180 27 C -0.039 4.039 28 H 0.096 0.904 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.103 0.897 34 H 0.088 0.912 35 H 0.130 0.870 36 H 0.121 0.879 37 H 0.088 0.912 38 H 0.119 0.881 39 H 0.177 0.823 40 H 0.187 0.813 41 H 0.172 0.828 42 H 0.135 0.865 43 H 0.097 0.903 44 H 0.098 0.902 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -10.390 16.032 15.657 24.701 hybrid contribution 0.398 -0.104 -1.566 1.620 sum -9.992 15.928 14.091 23.496 Atomic orbital electron populations 1.22270 0.94473 1.02531 1.03433 1.22399 0.94859 0.94400 0.87381 1.21865 1.01414 0.93627 1.03498 1.87927 1.86158 1.18707 1.36050 1.23199 0.92597 0.82408 0.99403 0.90445 1.22742 1.01686 0.93742 0.96769 1.22465 0.89234 0.98817 0.92212 1.48217 1.31849 1.12274 1.42889 1.18173 0.79176 0.84420 0.81127 1.90742 1.46421 1.77957 1.31225 1.19052 1.18756 0.89961 0.94849 1.21303 0.94353 0.99532 0.90126 1.21237 1.06271 0.90889 1.01380 1.21443 0.92929 1.00808 0.91117 1.21321 1.11427 0.96049 0.97396 1.19627 0.92529 0.94216 0.83017 1.83621 1.81518 1.33763 1.14778 1.20851 1.51904 0.84848 0.90002 0.88722 1.24987 0.95631 1.00884 0.95798 1.69668 1.49410 1.27783 1.08036 0.85459 0.78977 0.79526 0.78095 1.20191 1.20754 1.18016 1.22724 0.99049 0.82402 0.99754 0.90408 0.92733 0.91228 0.92957 0.92783 0.89696 0.91250 0.87018 0.87862 0.91236 0.88102 0.82294 0.81336 0.82849 0.86466 0.90336 0.90171 0.93359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.34 9.53 71.98 0.69 -1.66 16 2 C 0.07 1.17 3.18 30.60 0.10 1.26 16 3 C -0.15 -2.13 9.56 71.98 0.69 -1.44 16 4 O -0.37 -7.51 9.80 -148.98 -1.46 -8.97 16 5 C 0.08 1.77 3.36 32.06 0.11 1.88 16 6 H 0.08 1.69 7.80 -2.39 -0.02 1.67 16 7 C -0.11 -1.77 6.68 31.78 0.21 -1.55 16 8 C 0.09 2.01 5.92 86.73 0.51 2.52 16 9 N -0.62 -20.01 3.32 -815.10 -2.71 -22.72 16 10 C 0.58 25.24 7.16 86.69 0.62 25.86 16 11 O -0.58 -31.59 16.60 8.03 0.13 -31.46 16 12 C -0.22 -9.08 5.39 -19.99 -0.11 -9.19 16 13 C -0.04 -1.00 8.42 22.52 0.19 -0.81 16 14 C -0.18 -4.44 10.02 22.25 0.22 -4.22 16 15 C -0.04 -1.35 10.03 22.30 0.22 -1.13 16 16 C -0.24 -10.29 9.16 22.36 0.20 -10.09 16 17 C 0.16 7.74 6.63 22.91 0.15 7.89 16 18 O -0.23 -13.63 7.52 -7.90 -0.06 -13.69 16 19 C -0.40 -24.43 9.95 67.93 0.68 -23.76 16 20 H 0.10 5.82 5.44 -2.91 -0.02 5.80 16 21 C 0.03 1.65 5.49 84.85 0.47 2.12 16 22 N -0.91 -55.21 13.96 21.62 0.30 -54.90 16 23 Si 0.95 50.67 28.62 68.60 1.96 52.63 16 24 H -0.28 -14.68 7.11 99.48 0.71 -13.97 16 25 H -0.28 -15.97 7.11 99.48 0.71 -15.26 16 26 H -0.26 -12.19 7.11 99.48 0.71 -11.49 16 27 C 0.08 2.43 6.68 86.93 0.58 3.01 16 28 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.05 1.01 7.78 -2.39 -0.02 0.99 16 32 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 34 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.11 1.27 8.14 -2.38 -0.02 1.25 16 36 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.10 1.65 5.75 -2.38 -0.01 1.63 16 39 H 0.16 3.26 6.20 -2.91 -0.02 3.24 16 40 H 0.17 2.56 8.06 -2.91 -0.02 2.54 16 41 H 0.15 3.47 8.06 -2.91 -0.02 3.44 16 42 H 0.12 5.41 5.63 -2.92 -0.02 5.39 16 43 H 0.29 15.99 8.31 -92.70 -0.77 15.22 16 44 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 45 H 0.05 1.66 7.99 -2.39 -0.02 1.64 16 Total: -1.00 -80.73 370.73 4.69 -76.04 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: 0.99 Total: 12.37 kcal Atomic # 6 Polarization: -14.83 SS G_CDS: 5.53 Total: -9.30 kcal Atomic # 7 Polarization: -75.21 SS G_CDS: -2.41 Total: -77.62 kcal Atomic # 8 Polarization: -52.74 SS G_CDS: -1.39 Total: -54.12 kcal Atomic # 14 Polarization: 50.67 SS G_CDS: 1.96 Total: 52.63 kcal Total: -80.73 4.69 -76.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843613312.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.625 kcal (2) G-P(sol) polarization free energy of solvation -80.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds