Wall clock time and date at job start Tue Mar 31 2020 13:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.84111 * 2 1 4 4 C 1.53429 * 109.79877 * 239.16881 * 2 1 3 5 5 C 1.52856 * 108.84494 * 177.20317 * 4 2 1 6 6 H 1.08996 * 109.30039 * 291.20035 * 5 4 2 7 7 C 1.50706 * 109.29786 * 171.62278 * 5 4 2 8 8 O 1.20822 * 120.00226 * 0.02562 * 7 5 4 9 9 O 1.34230 * 119.99763 * 180.02562 * 7 5 4 10 10 C 1.45198 * 117.00173 * 180.02562 * 9 7 5 11 11 C 1.53000 * 109.47372 * 179.97438 * 10 9 7 12 12 O 1.42896 * 109.46884 * 64.99832 * 11 10 9 13 13 C 1.42900 * 113.99972 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.47190 * 180.02562 * 13 12 11 15 15 H 1.08003 * 120.00064 * 0.02562 * 14 13 12 16 16 C 1.37876 * 119.99775 * 180.02562 * 14 13 12 17 17 N 1.31512 * 119.99806 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 120.00260 * 0.02562 * 16 14 13 19 19 H 1.48493 * 109.47354 * 89.99786 * 18 16 14 20 20 H 1.48499 * 109.46805 * 210.00097 * 18 16 14 21 21 H 1.48509 * 109.46956 * 329.99572 * 18 16 14 22 22 C 1.50590 * 110.48631 * 51.31502 * 5 4 2 23 23 C 1.38500 * 118.92809 * 159.53741 * 22 5 4 24 24 C 1.38127 * 120.31176 * 179.83231 * 23 22 5 25 25 C 1.38315 * 120.15456 * 359.95476 * 24 23 22 26 26 C 1.38016 * 119.91165 * 0.11151 * 25 24 23 27 27 C 1.38609 * 121.50844 * 339.47297 * 22 5 4 28 28 N 1.39922 * 120.84283 * 0.29126 * 27 22 5 29 29 H 1.08995 * 109.47548 * 180.82861 * 1 2 3 30 30 H 1.09001 * 109.47156 * 300.83236 * 1 2 3 31 31 H 1.08998 * 109.46821 * 60.82607 * 1 2 3 32 32 H 1.09003 * 109.57512 * 57.39158 * 4 2 1 33 33 H 1.09007 * 109.57511 * 297.01485 * 4 2 1 34 34 H 1.09003 * 109.47123 * 300.00357 * 10 9 7 35 35 H 1.09003 * 109.46718 * 60.00123 * 10 9 7 36 36 H 1.09000 * 109.47263 * 185.00205 * 11 10 9 37 37 H 1.09001 * 109.46774 * 305.00430 * 11 10 9 38 38 H 1.09004 * 109.47503 * 300.00403 * 13 12 11 39 39 H 1.09001 * 109.46977 * 60.00579 * 13 12 11 40 40 H 0.97001 * 120.00431 * 179.97438 * 17 16 14 41 41 H 1.08002 * 119.85011 * 359.80118 * 23 22 5 42 42 H 1.07994 * 119.92557 * 179.97438 * 24 23 22 43 43 H 1.08002 * 120.03761 * 180.08866 * 25 24 23 44 44 H 1.08002 * 119.98532 * 179.97438 * 26 25 24 45 45 H 0.96996 * 120.54103 * 166.59515 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8999 1.0253 0.0000 4 6 2.0497 -0.7399 -1.2396 5 6 3.5764 -0.6665 -1.2544 6 1 3.8859 0.3609 -1.4461 7 6 4.1073 -1.5586 -2.3469 8 8 3.3419 -2.1860 -3.0400 9 8 5.4306 -1.6562 -2.5499 10 6 5.8704 -2.5337 -3.6199 11 6 7.3982 -2.5150 -3.6994 12 8 7.9443 -3.0743 -2.5032 13 6 9.3727 -3.1047 -2.4751 14 6 9.8368 -3.7113 -1.1760 15 1 9.1133 -4.0410 -0.4450 16 6 11.1851 -3.8454 -0.9206 17 7 11.5901 -4.3752 0.2128 18 14 12.4364 -3.2744 -2.1846 19 1 12.7828 -1.8529 -1.9312 20 1 13.6607 -4.1084 -2.0807 21 1 11.8604 -3.4083 -3.5469 22 6 4.1384 -1.1126 0.0696 23 6 5.4587 -1.5261 0.1318 24 6 6.0045 -1.9378 1.3320 25 6 5.2348 -1.9388 2.4813 26 6 3.9178 -1.5296 2.4279 27 6 3.3656 -1.1163 1.2202 28 7 2.0275 -0.7085 1.1871 29 1 -0.3634 -1.0275 0.0149 30 1 -0.3633 0.5267 0.8824 31 1 -0.3633 0.5009 -0.8973 32 1 1.6526 -0.2692 -2.1390 33 1 1.7344 -1.7826 -1.2014 34 1 5.5290 -3.5495 -3.4203 35 1 5.4534 -2.1896 -4.5664 36 1 7.7247 -3.1027 -4.5573 37 1 7.7436 -1.4871 -3.8104 38 1 9.7398 -3.7050 -3.3076 39 1 9.7594 -2.0893 -2.5610 40 1 12.5386 -4.4698 0.3924 41 1 6.0644 -1.5271 -0.7624 42 1 7.0346 -2.2593 1.3734 43 1 5.6639 -2.2597 3.4190 44 1 3.3156 -1.5303 3.3245 45 1 1.4380 -0.8909 1.9354 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884634788.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:37 Heat of formation + Delta-G solvation = -126.958548 kcal Electronic energy + Delta-G solvation = -27119.799734 eV Core-core repulsion = 23294.230105 eV Total energy + Delta-G solvation = -3825.569629 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.10743 -40.59355 -38.85468 -37.95025 -37.27738 -34.89977 -34.65741 -32.73029 -31.78718 -30.56844 -29.59036 -28.37351 -26.34807 -24.09025 -23.84964 -23.44715 -23.08368 -22.07111 -20.51712 -19.11399 -18.95820 -18.37462 -17.76892 -17.56218 -17.32926 -17.02530 -16.65695 -16.33190 -16.17861 -15.41573 -15.11281 -14.98342 -14.75821 -14.56263 -14.46836 -14.16878 -14.02905 -13.74882 -13.46083 -13.27418 -13.18526 -12.99793 -12.76866 -12.64987 -12.41631 -12.38747 -12.17223 -11.98719 -11.83033 -11.72671 -11.59320 -11.52903 -11.33328 -10.92498 -10.89764 -10.40062 -9.68437 -8.35477 -8.31126 -6.43260 0.40552 0.67243 1.09814 1.33892 1.37174 1.47520 1.62100 2.30224 2.50228 2.92521 2.95300 2.97250 3.41183 3.59337 3.70405 3.91010 3.95486 4.10616 4.13286 4.20750 4.28211 4.36284 4.40484 4.41372 4.50229 4.58501 4.60355 4.64191 4.69528 4.74364 4.82325 4.95685 5.00354 5.03191 5.19298 5.20938 5.32838 5.33688 5.41684 5.44135 5.61400 5.83496 5.92606 5.92991 6.40653 6.59827 6.63474 6.72894 6.93152 7.20507 8.81684 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.016694 B = 0.003460 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.841635 B = 8089.921551 C = 9518.280543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.152 3.848 3 H 0.081 0.919 4 C -0.113 4.113 5 C -0.024 4.024 6 H 0.133 0.867 7 C 0.471 3.529 8 O -0.531 6.531 9 O -0.350 6.350 10 C 0.070 3.930 11 C 0.050 3.950 12 O -0.404 6.404 13 C 0.179 3.821 14 C -0.543 4.543 15 H 0.028 0.972 16 C 0.013 3.987 17 N -0.942 5.942 18 Si 0.955 3.045 19 H -0.260 1.260 20 H -0.275 1.275 21 H -0.242 1.242 22 C -0.177 4.177 23 C -0.084 4.084 24 C -0.194 4.194 25 C -0.075 4.075 26 C -0.194 4.194 27 C 0.226 3.774 28 N -0.741 5.741 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.102 0.898 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.113 0.887 36 H 0.090 0.910 37 H 0.067 0.933 38 H 0.016 0.984 39 H 0.013 0.987 40 H 0.272 0.728 41 H 0.129 0.871 42 H 0.095 0.905 43 H 0.136 0.864 44 H 0.150 0.850 45 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.228 12.960 -2.916 25.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.048 3.952 3 H 0.099 0.901 4 C -0.151 4.151 5 C -0.043 4.043 6 H 0.150 0.850 7 C 0.316 3.684 8 O -0.421 6.421 9 O -0.267 6.267 10 C -0.004 4.004 11 C -0.026 4.026 12 O -0.324 6.324 13 C 0.104 3.896 14 C -0.581 4.581 15 H 0.047 0.953 16 C -0.185 4.185 17 N -0.582 5.582 18 Si 0.776 3.224 19 H -0.185 1.185 20 H -0.200 1.200 21 H -0.165 1.165 22 C -0.182 4.182 23 C -0.102 4.102 24 C -0.214 4.214 25 C -0.093 4.093 26 C -0.216 4.216 27 C 0.122 3.878 28 N -0.374 5.374 29 H 0.078 0.922 30 H 0.096 0.904 31 H 0.106 0.894 32 H 0.120 0.880 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.131 0.869 36 H 0.107 0.893 37 H 0.085 0.915 38 H 0.034 0.966 39 H 0.031 0.969 40 H 0.081 0.919 41 H 0.147 0.853 42 H 0.114 0.886 43 H 0.154 0.846 44 H 0.168 0.832 45 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -22.468 12.732 -3.061 26.006 hybrid contribution 1.209 -0.572 -0.107 1.342 sum -21.259 12.160 -3.168 24.695 Atomic orbital electron populations 1.21954 0.91440 1.03126 1.04302 1.21224 0.95874 0.95059 0.83078 0.90129 1.21892 0.90362 1.02381 1.00469 1.19921 0.97345 0.99303 0.87729 0.85000 1.24005 0.80416 0.80414 0.83614 1.90608 1.58575 1.44778 1.48159 1.86630 1.25266 1.62288 1.52473 1.23262 0.93731 0.93691 0.89674 1.22749 0.91304 0.99517 0.89066 1.87937 1.22105 1.83082 1.39276 1.20348 0.78113 0.95302 0.95859 1.21134 0.92721 1.41590 1.02620 0.95335 1.25836 1.00275 0.94436 0.97964 1.70037 1.16616 1.45569 1.25947 0.85623 0.77813 0.79159 0.79832 1.18462 1.20022 1.16548 1.18861 0.94590 1.11569 0.93135 1.21554 0.94651 0.95204 0.98766 1.21017 1.00322 1.05898 0.94153 1.21168 0.93920 0.96242 0.98005 1.20886 0.95879 1.07954 0.96870 1.17515 0.85384 0.92718 0.92176 1.44908 1.06983 1.64242 1.21270 0.92219 0.90417 0.89410 0.88006 0.92011 0.91846 0.86944 0.89259 0.91457 0.96594 0.96890 0.91876 0.85336 0.88632 0.84616 0.83215 0.75067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.41 71.98 0.68 -0.53 16 2 C 0.15 2.05 3.53 45.05 0.16 2.21 16 3 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 4 C -0.11 -2.09 4.10 30.69 0.13 -1.97 16 5 C -0.02 -0.59 2.77 -12.37 -0.03 -0.62 16 6 H 0.13 2.60 8.14 -2.39 -0.02 2.58 16 7 C 0.47 14.24 7.04 71.24 0.50 14.74 16 8 O -0.53 -17.55 15.58 21.98 0.34 -17.21 16 9 O -0.35 -11.54 7.17 -48.77 -0.35 -11.89 16 10 C 0.07 2.10 5.84 71.98 0.42 2.52 16 11 C 0.05 1.65 6.33 71.98 0.46 2.10 16 12 O -0.40 -18.90 10.30 -145.56 -1.50 -20.39 16 13 C 0.18 8.96 4.76 71.24 0.34 9.30 16 14 C -0.54 -33.33 9.99 25.60 0.26 -33.07 16 15 H 0.03 1.99 8.06 -2.91 -0.02 1.96 16 16 C 0.01 0.76 5.47 84.65 0.46 1.22 16 17 N -0.94 -59.79 13.96 21.45 0.30 -59.49 16 18 Si 0.95 43.31 27.47 68.60 1.88 45.20 16 19 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 20 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 21 H -0.24 -9.98 6.54 99.48 0.65 -9.32 16 22 C -0.18 -5.13 5.46 -19.75 -0.11 -5.24 16 23 C -0.08 -3.02 9.03 22.31 0.20 -2.82 16 24 C -0.19 -7.21 10.04 22.26 0.22 -6.99 16 25 C -0.07 -2.22 10.05 22.24 0.22 -1.99 16 26 C -0.19 -4.73 9.88 22.42 0.22 -4.51 16 27 C 0.23 5.56 6.47 38.14 0.25 5.80 16 28 N -0.74 -12.35 5.59 -317.32 -1.78 -14.13 16 29 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.06 1.43 7.83 -2.38 -0.02 1.41 16 34 H 0.06 2.09 8.13 -2.39 -0.02 2.07 16 35 H 0.11 2.62 8.13 -2.39 -0.02 2.60 16 36 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 37 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.02 0.77 7.20 -2.38 -0.02 0.75 16 39 H 0.01 0.63 7.57 -2.39 -0.02 0.61 16 40 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 41 H 0.13 5.17 5.11 -2.91 -0.01 5.15 16 42 H 0.10 4.07 8.06 -2.91 -0.02 4.05 16 43 H 0.14 3.46 8.06 -2.91 -0.02 3.43 16 44 H 0.15 2.62 8.06 -2.91 -0.02 2.60 16 45 H 0.41 4.97 8.60 -92.71 -0.80 4.17 16 Total: -1.00 -77.58 369.24 3.41 -74.16 By element: Atomic # 1 Polarization: 23.45 SS G_CDS: 0.14 Total: 23.59 kcal Atomic # 6 Polarization: -24.21 SS G_CDS: 4.37 Total: -19.83 kcal Atomic # 7 Polarization: -72.14 SS G_CDS: -1.48 Total: -73.62 kcal Atomic # 8 Polarization: -47.98 SS G_CDS: -1.51 Total: -49.49 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 1.88 Total: 45.20 kcal Total: -77.58 3.41 -74.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884634788.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.797 kcal (2) G-P(sol) polarization free energy of solvation -77.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds