Wall clock time and date at job start Tue Mar 31 2020 13:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46247 * 2 1 4 4 C 1.53043 * 109.45162 * 119.96655 * 2 1 3 5 5 C 1.53116 * 109.27686 * 179.19019 * 4 2 1 6 6 H 1.08999 * 109.57221 * 62.28723 * 5 4 2 7 7 C 1.50696 * 109.52163 * 182.44265 * 5 4 2 8 8 O 1.20826 * 120.00189 * 359.68567 * 7 5 4 9 9 O 1.34272 * 120.00057 * 179.68607 * 7 5 4 10 10 C 1.35922 * 116.99907 * 175.08557 * 9 7 5 11 11 C 1.38826 * 120.01791 * 245.98260 * 10 9 7 12 12 C 1.38190 * 120.08465 * 179.97438 * 11 10 9 13 13 C 1.38154 * 120.11659 * 0.02897 * 12 11 10 14 14 C 1.38894 * 120.04532 * 359.97254 * 13 12 11 15 15 O 1.35751 * 120.03864 * 179.97438 * 14 13 12 16 16 C 1.34830 * 116.99768 * 185.92945 * 15 14 13 17 17 H 1.08007 * 119.99896 * 5.54322 * 16 15 14 18 18 C 1.38652 * 120.00054 * 185.55185 * 16 15 14 19 19 N 1.31555 * 120.00221 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00168 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47420 * 89.99252 * 20 18 16 22 22 H 1.48492 * 109.47225 * 209.99812 * 20 18 16 23 23 H 1.48505 * 109.47085 * 329.99713 * 20 18 16 24 24 C 1.38563 * 120.02233 * 65.96567 * 10 9 7 25 25 C 1.53120 * 109.16388 * 302.34896 * 5 4 2 26 26 C 1.53039 * 109.27524 * 57.65409 * 25 5 4 27 27 N 1.46839 * 109.46489 * 240.01898 * 2 1 3 28 28 C 1.46905 * 111.00296 * 54.15354 * 27 2 1 29 29 H 1.09003 * 109.46906 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47471 * 299.98302 * 1 2 3 31 31 H 1.08998 * 109.46886 * 59.98392 * 1 2 3 32 32 H 1.09005 * 109.49917 * 59.25499 * 4 2 1 33 33 H 1.08998 * 109.50624 * 299.13372 * 4 2 1 34 34 H 1.08002 * 119.96252 * 359.96018 * 11 10 9 35 35 H 1.07995 * 119.94255 * 179.97438 * 12 11 10 36 36 H 1.08006 * 119.97628 * 179.70238 * 13 12 11 37 37 H 0.96994 * 120.00333 * 180.02562 * 19 18 16 38 38 H 1.07995 * 120.06812 * 359.97438 * 24 10 9 39 39 H 1.08996 * 109.50634 * 177.59079 * 25 5 4 40 40 H 1.08996 * 109.50114 * 297.67584 * 25 5 4 41 41 H 1.09000 * 109.46633 * 60.83844 * 26 25 5 42 42 H 1.09004 * 109.46196 * 180.81563 * 26 25 5 43 43 H 1.09001 * 109.47357 * 180.25501 * 28 27 2 44 44 H 1.09001 * 109.46801 * 300.25809 * 28 27 2 45 45 H 1.08997 * 109.46609 * 60.25666 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0397 -0.7208 1.2502 5 6 3.5707 -0.7362 1.2360 6 1 3.9464 0.2865 1.2681 7 6 4.0778 -1.4969 2.4339 8 8 3.2959 -1.9731 3.2225 9 8 5.3985 -1.6455 2.6251 10 6 5.7909 -2.2521 3.7764 11 6 6.4968 -1.5355 4.7332 12 6 6.8960 -2.1507 5.9045 13 6 6.5946 -3.4805 6.1266 14 6 5.8887 -4.2023 5.1728 15 8 5.5930 -5.5091 5.3910 16 6 5.0154 -6.1836 4.3764 17 1 4.8900 -5.7088 3.4145 18 6 4.5821 -7.4867 4.5681 19 7 4.7351 -8.0652 5.7397 20 14 3.7812 -8.4210 3.1627 21 1 4.8238 -9.1443 2.3913 22 1 2.8043 -9.3963 3.7099 23 1 3.0787 -7.4649 2.2695 24 6 5.4865 -3.5859 3.9959 25 6 4.0546 -1.4191 -0.0462 26 6 3.4865 -0.6780 -1.2587 27 7 2.0193 -0.6918 -1.1992 28 6 1.4375 -0.1107 -2.4166 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5135 0.8901 31 1 -0.3633 0.5141 -0.8898 32 1 1.6655 -1.7446 1.2578 33 1 1.6892 -0.1980 2.1400 34 1 6.7345 -0.4959 4.5620 35 1 7.4454 -1.5912 6.6470 36 1 6.9119 -3.9603 7.0407 37 1 4.4324 -8.9769 5.8737 38 1 4.9368 -4.1448 3.2531 39 1 5.1437 -1.3951 -0.0826 40 1 3.7127 -2.4540 -0.0586 41 1 3.8405 0.3529 -1.2529 42 1 3.8174 -1.1704 -2.1731 43 1 1.8132 -0.6446 -3.2895 44 1 0.3517 -0.1971 -2.3772 45 1 1.7161 0.9407 -2.4861 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891612649.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:01 Heat of formation + Delta-G solvation = -76.909836 kcal Electronic energy + Delta-G solvation = -26978.311601 eV Core-core repulsion = 23154.912248 eV Total energy + Delta-G solvation = -3823.399354 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.09396 -39.54232 -38.64658 -37.02510 -35.70091 -34.05194 -32.66691 -32.28960 -29.75749 -28.93700 -27.96081 -26.85485 -25.42996 -24.28509 -22.72190 -22.07147 -21.50335 -20.34770 -19.83164 -18.26868 -17.77969 -16.98581 -16.19244 -16.10205 -15.83169 -15.40070 -15.11266 -14.85849 -14.50372 -14.31877 -14.17733 -13.87884 -13.57634 -13.35740 -13.08990 -12.92476 -12.55418 -12.47025 -12.29517 -12.09109 -12.01028 -11.88113 -11.58566 -11.40933 -11.25112 -11.11690 -11.01435 -10.88018 -10.84416 -10.66428 -10.47127 -10.32263 -10.12182 -9.52000 -8.85399 -8.59905 -8.12236 -7.33673 -6.46778 -4.05769 1.78872 2.22639 2.38798 3.05607 3.14274 3.15833 3.20427 3.58722 3.96743 4.36138 4.45327 4.50046 4.63128 4.75365 4.92397 4.98447 5.07976 5.09192 5.11523 5.18820 5.21617 5.25499 5.35792 5.45261 5.52354 5.54987 5.60669 5.64699 5.71177 5.78665 5.81038 5.94701 5.98580 6.02031 6.16875 6.17712 6.33258 6.58051 6.78591 6.82540 6.91730 7.03992 7.10171 7.15499 7.34414 7.61844 7.96912 8.18423 8.98551 9.64710 10.70771 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.011639 B = 0.003756 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2405.121545 B = 7452.715346 C = 9126.966843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.084 3.916 3 H 0.042 0.958 4 C -0.099 4.099 5 C -0.075 4.075 6 H 0.104 0.896 7 C 0.455 3.545 8 O -0.477 6.477 9 O -0.295 6.295 10 C 0.119 3.881 11 C -0.213 4.213 12 C -0.065 4.065 13 C -0.190 4.190 14 C 0.163 3.837 15 O -0.170 6.170 16 C -0.391 4.391 17 H 0.090 0.910 18 C 0.042 3.958 19 N -0.860 5.860 20 Si 0.940 3.060 21 H -0.272 1.272 22 H -0.276 1.276 23 H -0.266 1.266 24 C -0.229 4.229 25 C -0.112 4.112 26 C 0.059 3.941 27 N -0.541 5.541 28 C 0.022 3.978 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.114 0.886 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.271 0.729 38 H 0.131 0.869 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.036 0.964 42 H 0.082 0.918 43 H 0.067 0.933 44 H 0.073 0.927 45 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.872 17.356 -13.758 22.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.024 4.024 3 H 0.060 0.940 4 C -0.136 4.136 5 C -0.094 4.094 6 H 0.122 0.878 7 C 0.298 3.702 8 O -0.361 6.361 9 O -0.211 6.211 10 C 0.078 3.922 11 C -0.233 4.233 12 C -0.083 4.083 13 C -0.209 4.209 14 C 0.109 3.891 15 O -0.073 6.073 16 C -0.467 4.467 17 H 0.108 0.892 18 C -0.163 4.163 19 N -0.494 5.494 20 Si 0.764 3.236 21 H -0.197 1.197 22 H -0.201 1.201 23 H -0.191 1.191 24 C -0.249 4.249 25 C -0.150 4.150 26 C -0.068 4.068 27 N -0.266 5.266 28 C -0.126 4.126 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.104 0.896 33 H 0.096 0.904 34 H 0.132 0.868 35 H 0.140 0.860 36 H 0.141 0.859 37 H 0.081 0.919 38 H 0.149 0.851 39 H 0.103 0.897 40 H 0.099 0.901 41 H 0.054 0.946 42 H 0.100 0.900 43 H 0.086 0.914 44 H 0.092 0.908 45 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -4.303 16.296 -13.167 21.388 hybrid contribution -0.141 0.337 -0.717 0.805 sum -4.444 16.634 -13.884 22.118 Atomic orbital electron populations 1.21914 0.93835 1.03046 1.01800 1.21617 0.95801 0.95150 0.89865 0.93997 1.21596 0.91662 1.03366 0.97025 1.21103 0.97312 0.99804 0.91221 0.87778 1.23926 0.80716 0.78522 0.87070 1.90745 1.56167 1.44009 1.45184 1.84510 1.25960 1.71560 1.39028 1.18271 0.98231 0.90685 0.84970 1.20404 1.08790 0.99587 0.94488 1.20472 0.98327 0.93775 0.95732 1.20314 1.05498 0.94467 1.00635 1.19146 0.92296 0.85533 0.92127 1.84010 1.67930 1.15702 1.39660 1.21310 1.39326 0.95571 0.90518 0.89230 1.25281 0.96815 0.96045 0.98131 1.70030 1.43440 1.13809 1.22161 0.85726 0.78974 0.79291 0.79608 1.19735 1.20094 1.19083 1.21217 1.08429 0.94425 1.00829 1.21631 1.01236 1.00701 0.91389 1.22078 0.87062 0.98925 0.98769 1.61943 1.07228 1.55245 1.02215 1.22418 1.00840 0.97059 0.92262 0.91393 0.91902 0.92350 0.89584 0.90359 0.86753 0.86004 0.85923 0.91911 0.85102 0.89682 0.90051 0.94560 0.89997 0.91387 0.90827 0.95797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 8.76 37.16 0.33 -0.88 16 2 C 0.08 0.78 2.44 -67.72 -0.17 0.61 16 3 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 4 C -0.10 -1.14 3.96 -26.65 -0.11 -1.24 16 5 C -0.08 -0.90 2.70 -91.65 -0.25 -1.15 16 6 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 7 C 0.46 7.72 7.07 36.00 0.25 7.98 16 8 O -0.48 -9.92 15.05 -18.75 -0.28 -10.20 16 9 O -0.30 -5.35 9.98 -23.63 -0.24 -5.58 16 10 C 0.12 2.47 5.46 -39.24 -0.21 2.26 16 11 C -0.21 -3.96 9.98 -39.38 -0.39 -4.35 16 12 C -0.06 -1.18 10.03 -39.63 -0.40 -1.57 16 13 C -0.19 -4.08 9.99 -39.37 -0.39 -4.47 16 14 C 0.16 4.12 6.64 -39.13 -0.26 3.86 16 15 O -0.17 -4.98 9.76 0.05 0.00 -4.98 16 16 C -0.39 -11.32 9.44 30.89 0.29 -11.03 16 17 H 0.09 2.46 5.30 -52.48 -0.28 2.18 16 18 C 0.04 1.18 5.49 -17.52 -0.10 1.09 16 19 N -0.86 -25.55 13.67 55.48 0.76 -24.79 16 20 Si 0.94 21.16 29.55 -169.99 -5.02 16.14 16 21 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 22 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 23 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 24 C -0.23 -5.46 7.99 -39.25 -0.31 -5.77 16 25 C -0.11 -1.20 5.31 -26.65 -0.14 -1.34 16 26 C 0.06 0.52 5.46 -3.83 -0.02 0.50 16 27 N -0.54 -5.11 4.75 -234.92 -1.11 -6.23 16 28 C 0.02 0.16 9.06 60.07 0.54 0.71 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.40 6.32 -51.93 -0.33 0.07 16 32 H 0.09 1.18 8.05 -51.93 -0.42 0.76 16 33 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 35 H 0.12 1.74 8.06 -52.49 -0.42 1.31 16 36 H 0.12 2.47 8.06 -52.48 -0.42 2.05 16 37 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 38 H 0.13 3.26 5.72 -52.49 -0.30 2.96 16 39 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 42 H 0.08 0.65 8.09 -51.93 -0.42 0.23 16 43 H 0.07 0.45 8.10 -51.93 -0.42 0.03 16 44 H 0.07 0.50 6.20 -51.93 -0.32 0.18 16 45 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 LS Contribution 367.39 15.07 5.54 5.54 Total: -1.00 -33.09 367.39 -8.39 -41.47 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -6.69 Total: 3.44 kcal Atomic # 6 Polarization: -13.47 SS G_CDS: -1.33 Total: -14.80 kcal Atomic # 7 Polarization: -30.66 SS G_CDS: -0.36 Total: -31.02 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: -0.52 Total: -20.76 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.09 -8.39 -41.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891612649.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.435 kcal (2) G-P(sol) polarization free energy of solvation -33.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds