Wall clock time and date at job start Tue Mar 31 2020 13:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46247 * 2 1 4 4 C 1.53043 * 109.45162 * 119.96655 * 2 1 3 5 5 C 1.53116 * 109.27686 * 179.19019 * 4 2 1 6 6 H 1.08999 * 109.57221 * 62.28723 * 5 4 2 7 7 C 1.50696 * 109.52163 * 182.44265 * 5 4 2 8 8 O 1.20826 * 120.00189 * 359.68567 * 7 5 4 9 9 O 1.34272 * 120.00057 * 179.68607 * 7 5 4 10 10 C 1.35922 * 116.99907 * 175.08557 * 9 7 5 11 11 C 1.38826 * 120.01791 * 245.98260 * 10 9 7 12 12 C 1.38190 * 120.08465 * 179.97438 * 11 10 9 13 13 C 1.38154 * 120.11659 * 0.02897 * 12 11 10 14 14 C 1.38894 * 120.04532 * 359.97254 * 13 12 11 15 15 O 1.35751 * 120.03864 * 179.97438 * 14 13 12 16 16 C 1.34830 * 116.99768 * 185.92945 * 15 14 13 17 17 H 1.08007 * 119.99896 * 5.54322 * 16 15 14 18 18 C 1.38652 * 120.00054 * 185.55185 * 16 15 14 19 19 N 1.31555 * 120.00221 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00168 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47420 * 89.99252 * 20 18 16 22 22 H 1.48492 * 109.47225 * 209.99812 * 20 18 16 23 23 H 1.48505 * 109.47085 * 329.99713 * 20 18 16 24 24 C 1.38563 * 120.02233 * 65.96567 * 10 9 7 25 25 C 1.53120 * 109.16388 * 302.34896 * 5 4 2 26 26 C 1.53039 * 109.27524 * 57.65409 * 25 5 4 27 27 N 1.46839 * 109.46489 * 240.01898 * 2 1 3 28 28 C 1.46905 * 111.00296 * 54.15354 * 27 2 1 29 29 H 1.09003 * 109.46906 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47471 * 299.98302 * 1 2 3 31 31 H 1.08998 * 109.46886 * 59.98392 * 1 2 3 32 32 H 1.09005 * 109.49917 * 59.25499 * 4 2 1 33 33 H 1.08998 * 109.50624 * 299.13372 * 4 2 1 34 34 H 1.08002 * 119.96252 * 359.96018 * 11 10 9 35 35 H 1.07995 * 119.94255 * 179.97438 * 12 11 10 36 36 H 1.08006 * 119.97628 * 179.70238 * 13 12 11 37 37 H 0.96994 * 120.00333 * 180.02562 * 19 18 16 38 38 H 1.07995 * 120.06812 * 359.97438 * 24 10 9 39 39 H 1.08996 * 109.50634 * 177.59079 * 25 5 4 40 40 H 1.08996 * 109.50114 * 297.67584 * 25 5 4 41 41 H 1.09000 * 109.46633 * 60.83844 * 26 25 5 42 42 H 1.09004 * 109.46196 * 180.81563 * 26 25 5 43 43 H 1.09001 * 109.47357 * 180.25501 * 28 27 2 44 44 H 1.09001 * 109.46801 * 300.25809 * 28 27 2 45 45 H 1.08997 * 109.46609 * 60.25666 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0397 -0.7208 1.2502 5 6 3.5707 -0.7362 1.2360 6 1 3.9464 0.2865 1.2681 7 6 4.0778 -1.4969 2.4339 8 8 3.2959 -1.9731 3.2225 9 8 5.3985 -1.6455 2.6251 10 6 5.7909 -2.2521 3.7764 11 6 6.4968 -1.5355 4.7332 12 6 6.8960 -2.1507 5.9045 13 6 6.5946 -3.4805 6.1266 14 6 5.8887 -4.2023 5.1728 15 8 5.5930 -5.5091 5.3910 16 6 5.0154 -6.1836 4.3764 17 1 4.8900 -5.7088 3.4145 18 6 4.5821 -7.4867 4.5681 19 7 4.7351 -8.0652 5.7397 20 14 3.7812 -8.4210 3.1627 21 1 4.8238 -9.1443 2.3913 22 1 2.8043 -9.3963 3.7099 23 1 3.0787 -7.4649 2.2695 24 6 5.4865 -3.5859 3.9959 25 6 4.0546 -1.4191 -0.0462 26 6 3.4865 -0.6780 -1.2587 27 7 2.0193 -0.6918 -1.1992 28 6 1.4375 -0.1107 -2.4166 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5135 0.8901 31 1 -0.3633 0.5141 -0.8898 32 1 1.6655 -1.7446 1.2578 33 1 1.6892 -0.1980 2.1400 34 1 6.7345 -0.4959 4.5620 35 1 7.4454 -1.5912 6.6470 36 1 6.9119 -3.9603 7.0407 37 1 4.4324 -8.9769 5.8737 38 1 4.9368 -4.1448 3.2531 39 1 5.1437 -1.3951 -0.0826 40 1 3.7127 -2.4540 -0.0586 41 1 3.8405 0.3529 -1.2529 42 1 3.8174 -1.1704 -2.1731 43 1 1.8132 -0.6446 -3.2895 44 1 0.3517 -0.1971 -2.3772 45 1 1.7161 0.9407 -2.4861 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891612649.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:00 Heat of formation + Delta-G solvation = -97.597158 kcal Electronic energy + Delta-G solvation = -26979.208671 eV Core-core repulsion = 23154.912248 eV Total energy + Delta-G solvation = -3824.296423 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.53424 -40.79339 -40.09843 -38.61145 -37.38179 -34.97533 -34.36672 -33.40407 -31.41586 -30.68551 -28.78917 -27.74037 -27.39170 -25.41394 -23.79272 -23.44438 -22.98034 -21.62485 -20.74921 -20.13689 -19.49271 -18.40056 -17.74236 -17.43369 -16.89745 -16.69203 -16.42416 -16.09853 -15.91825 -15.65449 -15.53622 -15.21955 -15.07398 -14.71665 -14.61603 -14.12833 -13.77295 -13.67241 -13.31679 -13.16446 -13.06848 -12.98652 -12.83026 -12.76682 -12.65773 -12.53277 -12.29068 -12.21744 -11.98056 -11.94336 -11.80672 -11.60872 -11.46682 -11.30395 -10.87536 -9.80011 -9.23726 -9.17097 -8.56099 -6.25137 0.12893 0.53283 1.00570 1.27496 1.36537 1.44873 1.66809 2.10527 2.70153 2.92670 3.03733 3.32044 3.40730 3.57588 3.66689 3.94415 3.98133 4.03635 4.17095 4.24169 4.26022 4.30292 4.45032 4.45684 4.51300 4.54035 4.67734 4.74792 4.77190 4.84135 4.88451 4.90971 4.92422 4.98300 5.02717 5.07606 5.11520 5.20330 5.31601 5.37430 5.43444 5.50497 5.54037 5.91261 5.98401 6.15168 6.16735 6.69702 6.87870 7.63176 8.66406 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.011639 B = 0.003756 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2405.121545 B = 7452.715346 C = 9126.966843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.090 3.910 3 H 0.060 0.940 4 C -0.097 4.097 5 C -0.065 4.065 6 H 0.140 0.860 7 C 0.454 3.546 8 O -0.523 6.523 9 O -0.289 6.289 10 C 0.110 3.890 11 C -0.189 4.189 12 C -0.046 4.046 13 C -0.197 4.197 14 C 0.125 3.875 15 O -0.221 6.221 16 C -0.417 4.417 17 H 0.087 0.913 18 C -0.014 4.014 19 N -0.912 5.912 20 Si 1.013 2.987 21 H -0.255 1.255 22 H -0.263 1.263 23 H -0.264 1.264 24 C -0.248 4.248 25 C -0.110 4.110 26 C 0.065 3.935 27 N -0.563 5.563 28 C 0.023 3.977 29 H 0.051 0.949 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.053 0.947 33 H 0.076 0.924 34 H 0.161 0.839 35 H 0.178 0.822 36 H 0.131 0.869 37 H 0.276 0.724 38 H 0.104 0.896 39 H 0.093 0.907 40 H 0.053 0.947 41 H 0.056 0.944 42 H 0.092 0.908 43 H 0.073 0.927 44 H 0.076 0.924 45 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.275 20.989 -15.586 26.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.019 4.019 3 H 0.078 0.922 4 C -0.135 4.135 5 C -0.084 4.084 6 H 0.157 0.843 7 C 0.299 3.701 8 O -0.409 6.409 9 O -0.204 6.204 10 C 0.069 3.931 11 C -0.208 4.208 12 C -0.064 4.064 13 C -0.216 4.216 14 C 0.074 3.926 15 O -0.127 6.127 16 C -0.493 4.493 17 H 0.105 0.895 18 C -0.213 4.213 19 N -0.549 5.549 20 Si 0.832 3.168 21 H -0.179 1.179 22 H -0.187 1.187 23 H -0.189 1.189 24 C -0.268 4.268 25 C -0.148 4.148 26 C -0.063 4.063 27 N -0.289 5.289 28 C -0.124 4.124 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.072 0.928 33 H 0.094 0.906 34 H 0.179 0.821 35 H 0.195 0.805 36 H 0.149 0.851 37 H 0.085 0.915 38 H 0.122 0.878 39 H 0.112 0.888 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.110 0.890 43 H 0.092 0.908 44 H 0.095 0.905 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -3.682 19.989 -15.017 25.272 hybrid contribution -0.228 -0.464 -0.126 0.533 sum -3.910 19.525 -15.144 25.017 Atomic orbital electron populations 1.21904 0.93200 1.02349 1.02947 1.21566 0.96299 0.95396 0.88596 0.92200 1.21581 0.91408 1.01866 0.98620 1.21312 0.97373 1.00666 0.89071 0.84253 1.25074 0.79685 0.77646 0.87690 1.90737 1.56923 1.46064 1.47165 1.84543 1.26854 1.70908 1.38058 1.18508 0.98380 0.89815 0.86374 1.21038 1.05368 1.01345 0.93038 1.21093 0.96608 0.92174 0.96519 1.20714 1.04766 0.95979 1.00145 1.19752 0.93869 0.85052 0.93880 1.83959 1.70487 1.17813 1.40411 1.21641 1.40240 0.96517 0.90918 0.89510 1.26502 0.97056 0.96538 1.01196 1.70145 1.45643 1.14562 1.24581 0.84688 0.78348 0.77774 0.76026 1.17940 1.18693 1.18866 1.21159 1.09317 0.96058 1.00275 1.21639 1.01831 0.99456 0.91836 1.22056 0.86748 0.99701 0.97776 1.61908 1.07734 1.56214 1.03019 1.22446 1.00952 0.97685 0.91331 0.93032 0.91364 0.90601 0.92804 0.90567 0.82128 0.80463 0.85109 0.91463 0.87834 0.88834 0.92763 0.92567 0.88953 0.90828 0.90537 0.94590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 8.76 71.98 0.63 -1.53 16 2 C 0.09 1.47 2.44 44.94 0.11 1.58 16 3 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 4 C -0.10 -2.19 3.96 30.65 0.12 -2.06 16 5 C -0.07 -1.47 2.70 -11.46 -0.03 -1.50 16 6 H 0.14 2.21 8.14 -2.39 -0.02 2.19 16 7 C 0.45 15.35 7.07 71.23 0.50 15.85 16 8 O -0.52 -22.52 15.05 21.96 0.33 -22.19 16 9 O -0.29 -10.15 9.98 4.48 0.04 -10.10 16 10 C 0.11 4.50 5.46 22.49 0.12 4.62 16 11 C -0.19 -6.30 9.98 22.40 0.22 -6.07 16 12 C -0.05 -1.51 10.03 22.24 0.22 -1.29 16 13 C -0.20 -8.41 9.99 22.41 0.22 -8.18 16 14 C 0.13 6.64 6.64 22.56 0.15 6.79 16 15 O -0.22 -13.88 9.76 -22.75 -0.22 -14.10 16 16 C -0.42 -25.92 9.44 67.92 0.64 -25.28 16 17 H 0.09 5.20 5.30 -2.91 -0.02 5.18 16 18 C -0.01 -0.85 5.49 84.83 0.47 -0.38 16 19 N -0.91 -57.20 13.67 21.61 0.30 -56.90 16 20 Si 1.01 45.32 29.55 68.60 2.03 47.35 16 21 H -0.25 -10.61 7.11 99.48 0.71 -9.90 16 22 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 23 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 24 C -0.25 -12.38 7.99 22.48 0.18 -12.20 16 25 C -0.11 -2.22 5.31 30.65 0.16 -2.06 16 26 C 0.06 0.96 5.46 86.33 0.47 1.44 16 27 N -0.56 -9.44 4.75 -897.16 -4.26 -13.70 16 28 C 0.02 0.27 9.06 127.69 1.16 1.43 16 29 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.08 0.85 6.32 -2.39 -0.02 0.84 16 32 H 0.05 1.55 8.05 -2.38 -0.02 1.53 16 33 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.16 3.97 8.06 -2.91 -0.02 3.94 16 35 H 0.18 3.90 8.06 -2.91 -0.02 3.88 16 36 H 0.13 5.27 8.06 -2.91 -0.02 5.25 16 37 H 0.28 15.74 8.31 -92.71 -0.77 14.97 16 38 H 0.10 5.62 5.72 -2.91 -0.02 5.60 16 39 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.09 1.21 8.09 -2.38 -0.02 1.19 16 43 H 0.07 0.78 8.10 -2.39 -0.02 0.76 16 44 H 0.08 0.85 6.20 -2.39 -0.01 0.83 16 45 H 0.04 0.35 8.14 -2.39 -0.02 0.33 16 Total: -1.00 -79.63 367.39 4.56 -75.07 By element: Atomic # 1 Polarization: 22.43 SS G_CDS: 0.99 Total: 23.41 kcal Atomic # 6 Polarization: -34.19 SS G_CDS: 5.36 Total: -28.83 kcal Atomic # 7 Polarization: -66.64 SS G_CDS: -3.96 Total: -70.60 kcal Atomic # 8 Polarization: -46.55 SS G_CDS: 0.15 Total: -46.39 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -79.63 4.56 -75.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891612649.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.530 kcal (2) G-P(sol) polarization free energy of solvation -79.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds