Wall clock time and date at job start Tue Mar 31 2020 13:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.47147 * 2 1 4 4 O 1.42897 * 109.47149 * 120.00008 * 2 1 3 5 5 C 1.35806 * 117.00154 * 155.04690 * 4 2 1 6 6 C 1.38791 * 119.92792 * 5.42923 * 5 4 2 7 7 C 1.37803 * 120.17404 * 179.97438 * 6 5 4 8 8 C 1.39755 * 120.03361 * 0.02562 * 7 6 5 9 9 C 1.47485 * 120.06735 * 180.02562 * 8 7 6 10 10 O 1.21509 * 119.99494 * 185.04640 * 9 8 7 11 11 O 1.34737 * 120.00056 * 5.04058 * 9 8 7 12 12 C 1.45207 * 116.99826 * 185.03493 * 11 9 8 13 13 C 1.53001 * 109.46971 * 184.94160 * 12 11 9 14 14 C 1.50700 * 115.54955 * 54.23104 * 13 12 11 15 15 H 1.08007 * 120.00096 * 215.58669 * 14 13 12 16 16 C 1.37879 * 120.00239 * 35.31688 * 14 13 12 17 17 N 1.31517 * 119.99314 * 355.74862 * 16 14 13 18 18 Si 1.86799 * 120.00190 * 175.74776 * 16 14 13 19 19 H 1.48498 * 109.46883 * 60.00183 * 18 16 14 20 20 H 1.48500 * 109.46900 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.47225 * 299.99754 * 18 16 14 22 22 C 1.52998 * 117.49701 * 199.90041 * 13 12 11 23 23 C 1.53000 * 117.50109 * 268.56161 * 13 12 11 24 24 C 1.39780 * 119.86215 * 0.27965 * 8 7 6 25 25 C 1.38285 * 119.82029 * 359.42489 * 24 8 7 26 26 N 1.39995 * 120.01451 * 180.31976 * 25 24 8 27 27 H 1.09001 * 109.47059 * 299.99951 * 1 2 3 28 28 H 1.09000 * 109.47076 * 60.00028 * 1 2 3 29 29 H 1.08993 * 109.47466 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47059 * 240.00049 * 2 1 3 31 31 H 1.08994 * 109.47186 * 300.00379 * 3 2 1 32 32 H 1.08997 * 109.46618 * 60.00036 * 3 2 1 33 33 H 1.08999 * 109.46756 * 179.97438 * 3 2 1 34 34 H 1.07993 * 119.91393 * 0.02562 * 6 5 4 35 35 H 1.07998 * 119.98279 * 179.97438 * 7 6 5 36 36 H 1.09000 * 109.46793 * 64.94578 * 12 11 9 37 37 H 1.08997 * 109.47110 * 304.94238 * 12 11 9 38 38 H 0.96999 * 119.99510 * 185.00348 * 17 16 14 39 39 H 1.09007 * 117.50002 * 214.99977 * 22 13 12 40 40 H 1.08996 * 117.50191 * 0.02562 * 22 13 12 41 41 H 1.09002 * 117.49434 * 359.97438 * 23 13 12 42 42 H 1.08997 * 117.49957 * 144.97114 * 23 13 12 43 43 H 1.08004 * 120.08579 * 179.72542 * 24 8 7 44 44 H 0.96998 * 120.00091 * 180.25452 * 26 25 24 45 45 H 0.97004 * 119.99880 * 0.25579 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 3.2461 -1.2235 1.0982 6 6 4.0327 -1.0201 -0.0271 7 6 5.2917 -1.5752 -0.1017 8 6 5.7802 -2.3460 0.9568 9 6 7.1278 -2.9401 0.8779 10 8 7.5159 -3.6844 1.7564 11 8 7.9284 -2.6575 -0.1683 12 6 9.1953 -3.3636 -0.2385 13 6 10.0139 -2.8268 -1.4144 14 6 10.2336 -1.3360 -1.4265 15 1 10.2535 -0.8006 -2.3644 16 6 10.4039 -0.6545 -0.2401 17 7 10.2913 -1.2906 0.9055 18 14 10.7943 1.1721 -0.2598 19 1 9.6970 1.9055 -0.9405 20 1 10.9277 1.6648 1.1347 21 1 12.0678 1.3983 -0.9892 22 6 11.1399 -3.7113 -1.9534 23 6 9.8548 -3.5284 -2.7647 24 6 4.9868 -2.5572 2.0881 25 6 3.7266 -1.9922 2.1594 26 7 2.9313 -2.1955 3.2934 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.6766 1.9564 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 3.1300 1.4425 0.0005 34 1 3.6573 -0.4244 -0.8460 35 1 5.9009 -1.4153 -0.9790 36 1 9.0104 -4.4284 -0.3806 37 1 9.7480 -3.2113 0.6886 38 1 10.3388 -0.7986 1.7401 39 1 12.0398 -3.2149 -2.3169 40 1 11.2973 -4.6758 -1.4706 41 1 9.1672 -4.3727 -2.8151 42 1 9.9086 -2.9117 -3.6617 43 1 5.3590 -3.1559 2.9063 44 1 2.0459 -1.8022 3.3417 45 1 3.2656 -2.7297 4.0309 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118394917.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:16 Heat of formation + Delta-G solvation = -71.966118 kcal Electronic energy + Delta-G solvation = -26920.404635 eV Core-core repulsion = 23097.219657 eV Total energy + Delta-G solvation = -3823.184978 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.44669 -39.23539 -37.60982 -36.56195 -34.80254 -34.44748 -33.16248 -32.13195 -30.20758 -28.51855 -27.53513 -26.41468 -25.35228 -23.85367 -22.63265 -21.28115 -21.10537 -19.96159 -19.10528 -18.31711 -17.28802 -16.94430 -16.41229 -15.77478 -15.60127 -15.20938 -15.08243 -14.94247 -14.51543 -14.40681 -13.77173 -13.59765 -13.50532 -13.12474 -12.92899 -12.61197 -12.50620 -12.39337 -12.12596 -11.86610 -11.73990 -11.48576 -11.27038 -10.96627 -10.92260 -10.78926 -10.69108 -10.48438 -10.46915 -10.28770 -9.87911 -9.46557 -9.20956 -8.94502 -8.71886 -8.44573 -8.20292 -7.24528 -5.93204 -4.07358 1.12872 1.64976 3.03688 3.27257 3.31079 3.36988 3.38409 3.61601 4.01806 4.19576 4.39555 4.53096 4.65633 4.80937 4.93462 5.00870 5.14594 5.25795 5.38650 5.43031 5.46359 5.52902 5.57096 5.57191 5.74580 5.79488 5.88889 5.95039 6.06026 6.17116 6.28196 6.47194 6.55858 6.64553 6.67083 6.74696 6.78525 6.87244 7.03470 7.17328 7.27115 7.53347 7.63379 7.71452 7.84117 7.96893 8.37219 8.80707 8.92850 9.54674 11.01081 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.013833 B = 0.003558 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.681827 B = 7867.069001 C = 8476.775145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.079 3.921 3 C -0.182 4.182 4 O -0.314 6.314 5 C 0.080 3.920 6 C -0.181 4.181 7 C -0.074 4.074 8 C -0.098 4.098 9 C 0.503 3.497 10 O -0.525 6.525 11 O -0.315 6.315 12 C 0.119 3.881 13 C 0.047 3.953 14 C -0.482 4.482 15 H 0.061 0.939 16 C 0.074 3.926 17 N -0.881 5.881 18 Si 0.897 3.103 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.276 1.276 22 C -0.197 4.197 23 C -0.209 4.209 24 C -0.107 4.107 25 C 0.176 3.824 26 N -0.877 5.877 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.134 0.866 35 H 0.143 0.857 36 H 0.019 0.981 37 H 0.119 0.881 38 H 0.263 0.737 39 H 0.083 0.917 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.078 0.922 43 H 0.140 0.860 44 H 0.401 0.599 45 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.730 1.563 0.371 18.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.022 3.978 3 C -0.239 4.239 4 O -0.228 6.228 5 C 0.031 3.969 6 C -0.200 4.200 7 C -0.094 4.094 8 C -0.101 4.101 9 C 0.348 3.652 10 O -0.418 6.418 11 O -0.229 6.229 12 C 0.046 3.954 13 C 0.047 3.953 14 C -0.519 4.519 15 H 0.079 0.921 16 C -0.129 4.129 17 N -0.518 5.518 18 Si 0.724 3.276 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.202 1.202 22 C -0.235 4.235 23 C -0.247 4.247 24 C -0.130 4.130 25 C 0.073 3.927 26 N -0.419 5.419 27 H 0.084 0.916 28 H 0.094 0.906 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.152 0.848 35 H 0.161 0.839 36 H 0.037 0.963 37 H 0.137 0.863 38 H 0.073 0.927 39 H 0.101 0.899 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.096 0.904 43 H 0.157 0.843 44 H 0.229 0.771 45 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -18.599 1.411 0.912 18.674 hybrid contribution 0.226 0.898 0.147 0.937 sum -18.373 2.309 1.059 18.548 Atomic orbital electron populations 1.21845 0.92700 1.02998 1.02913 1.22397 0.95042 0.92687 0.87630 1.22399 1.02729 0.95902 1.02907 1.85940 1.29331 1.68718 1.38861 1.18604 0.85869 0.97593 0.94799 1.21019 0.95726 1.05175 0.98089 1.21179 0.94632 0.94796 0.98765 1.18978 0.92654 1.02354 0.96064 1.20852 0.85201 0.78593 0.80531 1.90732 1.75138 1.36359 1.39535 1.86485 1.30527 1.62536 1.43315 1.22846 0.80410 0.89052 1.03105 1.18921 0.94252 0.93841 0.88304 1.20399 1.48877 0.89759 0.92889 0.92078 1.24951 0.94164 0.98355 0.95387 1.69755 1.49362 1.35233 0.97485 0.86577 0.78967 0.84952 0.77061 1.20145 1.21235 1.20194 1.22988 0.93240 1.00971 1.06274 1.22946 1.00566 1.03282 0.97857 1.20475 0.91685 1.01978 0.98884 1.16818 0.91443 0.96851 0.87567 1.42174 1.19619 1.61747 1.18403 0.91634 0.90594 0.91752 0.90698 0.91093 0.91610 0.91377 0.84846 0.83925 0.96289 0.86312 0.92656 0.89859 0.91452 0.91291 0.90380 0.84261 0.77115 0.77431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.56 37.16 0.36 -0.64 16 2 C 0.08 0.71 2.84 -26.73 -0.08 0.63 16 3 C -0.18 -1.55 9.17 37.16 0.34 -1.21 16 4 O -0.31 -3.65 9.03 -19.13 -0.17 -3.82 16 5 C 0.08 1.09 6.63 -38.88 -0.26 0.83 16 6 C -0.18 -2.51 8.21 -39.54 -0.32 -2.83 16 7 C -0.07 -1.23 9.60 -39.17 -0.38 -1.61 16 8 C -0.10 -1.85 5.87 -104.99 -0.62 -2.47 16 9 C 0.50 11.49 7.88 34.50 0.27 11.76 16 10 O -0.53 -12.94 16.05 -19.27 -0.31 -13.25 16 11 O -0.31 -7.74 8.98 -40.59 -0.36 -8.10 16 12 C 0.12 3.01 4.45 37.16 0.17 3.17 16 13 C 0.05 1.19 2.21 -155.66 -0.34 0.84 16 14 C -0.48 -13.08 8.79 -34.44 -0.30 -13.38 16 15 H 0.06 1.64 7.82 -52.48 -0.41 1.23 16 16 C 0.07 2.02 5.35 -17.82 -0.10 1.92 16 17 N -0.88 -24.77 10.16 55.43 0.56 -24.20 16 18 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 C -0.20 -4.40 9.96 -26.69 -0.27 -4.66 16 23 C -0.21 -4.55 9.92 -26.69 -0.26 -4.81 16 24 C -0.11 -1.75 9.43 -38.99 -0.37 -2.12 16 25 C 0.18 2.47 6.76 -83.62 -0.57 1.91 16 26 N -0.88 -9.39 9.09 32.48 0.30 -9.10 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.66 6.30 -51.93 -0.33 0.33 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.68 6.90 -51.93 -0.36 0.32 16 34 H 0.13 1.52 5.40 -52.49 -0.28 1.23 16 35 H 0.14 2.43 7.61 -52.49 -0.40 2.03 16 36 H 0.02 0.45 8.09 -51.93 -0.42 0.03 16 37 H 0.12 3.33 5.76 -51.93 -0.30 3.03 16 38 H 0.26 7.22 8.32 -40.82 -0.34 6.88 16 39 H 0.08 1.83 8.14 -51.92 -0.42 1.41 16 40 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 41 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 42 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 43 H 0.14 2.23 7.65 -52.48 -0.40 1.82 16 44 H 0.40 3.77 8.18 -40.82 -0.33 3.43 16 45 H 0.40 3.56 8.84 -40.82 -0.36 3.20 16 LS Contribution 374.94 15.07 5.65 5.65 Total: -1.00 -30.87 374.94 -8.62 -39.49 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: -6.53 Total: 9.87 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: -2.72 Total: -12.67 kcal Atomic # 7 Polarization: -34.16 SS G_CDS: 0.86 Total: -33.30 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: -0.85 Total: -25.17 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.87 -8.62 -39.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118394917.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.475 kcal (2) G-P(sol) polarization free energy of solvation -30.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds