Wall clock time and date at job start Tue Mar 31 2020 13:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.47147 * 2 1 4 4 O 1.42897 * 109.47149 * 120.00008 * 2 1 3 5 5 C 1.35806 * 117.00154 * 155.04690 * 4 2 1 6 6 C 1.38791 * 119.92792 * 5.42923 * 5 4 2 7 7 C 1.37803 * 120.17404 * 179.97438 * 6 5 4 8 8 C 1.39755 * 120.03361 * 0.02562 * 7 6 5 9 9 C 1.47485 * 120.06735 * 180.02562 * 8 7 6 10 10 O 1.21509 * 119.99494 * 185.04640 * 9 8 7 11 11 O 1.34737 * 120.00056 * 5.04058 * 9 8 7 12 12 C 1.45207 * 116.99826 * 185.03493 * 11 9 8 13 13 C 1.53001 * 109.46971 * 184.94160 * 12 11 9 14 14 C 1.50700 * 115.54955 * 54.23104 * 13 12 11 15 15 H 1.08007 * 120.00096 * 215.58669 * 14 13 12 16 16 C 1.37879 * 120.00239 * 35.31688 * 14 13 12 17 17 N 1.31517 * 119.99314 * 355.74862 * 16 14 13 18 18 Si 1.86799 * 120.00190 * 175.74776 * 16 14 13 19 19 H 1.48498 * 109.46883 * 60.00183 * 18 16 14 20 20 H 1.48500 * 109.46900 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.47225 * 299.99754 * 18 16 14 22 22 C 1.52998 * 117.49701 * 199.90041 * 13 12 11 23 23 C 1.53000 * 117.50109 * 268.56161 * 13 12 11 24 24 C 1.39780 * 119.86215 * 0.27965 * 8 7 6 25 25 C 1.38285 * 119.82029 * 359.42489 * 24 8 7 26 26 N 1.39995 * 120.01451 * 180.31976 * 25 24 8 27 27 H 1.09001 * 109.47059 * 299.99951 * 1 2 3 28 28 H 1.09000 * 109.47076 * 60.00028 * 1 2 3 29 29 H 1.08993 * 109.47466 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47059 * 240.00049 * 2 1 3 31 31 H 1.08994 * 109.47186 * 300.00379 * 3 2 1 32 32 H 1.08997 * 109.46618 * 60.00036 * 3 2 1 33 33 H 1.08999 * 109.46756 * 179.97438 * 3 2 1 34 34 H 1.07993 * 119.91393 * 0.02562 * 6 5 4 35 35 H 1.07998 * 119.98279 * 179.97438 * 7 6 5 36 36 H 1.09000 * 109.46793 * 64.94578 * 12 11 9 37 37 H 1.08997 * 109.47110 * 304.94238 * 12 11 9 38 38 H 0.96999 * 119.99510 * 185.00348 * 17 16 14 39 39 H 1.09007 * 117.50002 * 214.99977 * 22 13 12 40 40 H 1.08996 * 117.50191 * 0.02562 * 22 13 12 41 41 H 1.09002 * 117.49434 * 359.97438 * 23 13 12 42 42 H 1.08997 * 117.49957 * 144.97114 * 23 13 12 43 43 H 1.08004 * 120.08579 * 179.72542 * 24 8 7 44 44 H 0.96998 * 120.00091 * 180.25452 * 26 25 24 45 45 H 0.97004 * 119.99880 * 0.25579 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 3.2461 -1.2235 1.0982 6 6 4.0327 -1.0201 -0.0271 7 6 5.2917 -1.5752 -0.1017 8 6 5.7802 -2.3460 0.9568 9 6 7.1278 -2.9401 0.8779 10 8 7.5159 -3.6844 1.7564 11 8 7.9284 -2.6575 -0.1683 12 6 9.1953 -3.3636 -0.2385 13 6 10.0139 -2.8268 -1.4144 14 6 10.2336 -1.3360 -1.4265 15 1 10.2535 -0.8006 -2.3644 16 6 10.4039 -0.6545 -0.2401 17 7 10.2913 -1.2906 0.9055 18 14 10.7943 1.1721 -0.2598 19 1 9.6970 1.9055 -0.9405 20 1 10.9277 1.6648 1.1347 21 1 12.0678 1.3983 -0.9892 22 6 11.1399 -3.7113 -1.9534 23 6 9.8548 -3.5284 -2.7647 24 6 4.9868 -2.5572 2.0881 25 6 3.7266 -1.9922 2.1594 26 7 2.9313 -2.1955 3.2934 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.6766 1.9564 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 3.1300 1.4425 0.0005 34 1 3.6573 -0.4244 -0.8460 35 1 5.9009 -1.4153 -0.9790 36 1 9.0104 -4.4284 -0.3806 37 1 9.7480 -3.2113 0.6886 38 1 10.3388 -0.7986 1.7401 39 1 12.0398 -3.2149 -2.3169 40 1 11.2973 -4.6758 -1.4706 41 1 9.1672 -4.3727 -2.8151 42 1 9.9086 -2.9117 -3.6617 43 1 5.3590 -3.1559 2.9063 44 1 2.0459 -1.8022 3.3417 45 1 3.2656 -2.7297 4.0309 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118394917.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:15 Heat of formation + Delta-G solvation = -89.009373 kcal Electronic energy + Delta-G solvation = -26921.143686 eV Core-core repulsion = 23097.219657 eV Total energy + Delta-G solvation = -3823.924029 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.62047 -40.84416 -38.86978 -38.27790 -36.65473 -35.55399 -34.17173 -33.91720 -31.44554 -29.73075 -28.27261 -28.07419 -27.36558 -25.12869 -23.82715 -23.00151 -22.18968 -21.32033 -21.05818 -19.34739 -18.72722 -18.54633 -17.85273 -17.27661 -17.13479 -16.51775 -16.46590 -16.37101 -15.99611 -15.57072 -15.34308 -14.90210 -14.59535 -14.45975 -14.06097 -13.94744 -13.66022 -13.50676 -13.29410 -13.21026 -13.11466 -12.87040 -12.81809 -12.69202 -12.33756 -12.24284 -12.10814 -11.79134 -11.74099 -11.64010 -11.54123 -11.32885 -11.12999 -10.89406 -10.65909 -10.15005 -9.63630 -8.31779 -7.96748 -6.17552 -0.20605 0.44822 1.43561 1.44051 1.52054 1.72038 2.00353 2.13216 2.43529 2.82843 2.95119 3.07215 3.58813 3.77534 3.86980 3.90399 3.99748 4.13283 4.20425 4.26873 4.29809 4.40385 4.42671 4.59928 4.72223 4.72998 4.79052 4.84289 4.88190 4.90790 4.93225 4.95996 5.05905 5.20451 5.24795 5.27750 5.34629 5.43622 5.48388 5.54022 5.57172 5.85009 5.91193 6.21532 6.34816 6.61943 6.80193 7.01173 7.06450 7.46462 8.94344 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.013833 B = 0.003558 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.681827 B = 7867.069001 C = 8476.775145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.067 3.933 3 C -0.181 4.181 4 O -0.313 6.313 5 C 0.093 3.907 6 C -0.173 4.173 7 C -0.080 4.080 8 C -0.128 4.128 9 C 0.497 3.503 10 O -0.556 6.556 11 O -0.326 6.326 12 C 0.127 3.873 13 C 0.006 3.994 14 C -0.496 4.496 15 H 0.059 0.941 16 C 0.029 3.971 17 N -0.905 5.905 18 Si 0.953 3.047 19 H -0.270 1.270 20 H -0.289 1.289 21 H -0.268 1.268 22 C -0.188 4.188 23 C -0.186 4.186 24 C -0.116 4.116 25 C 0.181 3.819 26 N -0.862 5.862 27 H 0.066 0.934 28 H 0.097 0.903 29 H 0.063 0.937 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.064 0.936 33 H 0.051 0.949 34 H 0.161 0.839 35 H 0.133 0.867 36 H 0.026 0.974 37 H 0.087 0.913 38 H 0.256 0.744 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.135 0.865 44 H 0.410 0.590 45 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.125 2.742 -0.641 21.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.012 3.988 3 C -0.238 4.238 4 O -0.227 6.227 5 C 0.044 3.956 6 C -0.192 4.192 7 C -0.101 4.101 8 C -0.130 4.130 9 C 0.345 3.655 10 O -0.451 6.451 11 O -0.240 6.240 12 C 0.053 3.947 13 C 0.006 3.994 14 C -0.533 4.533 15 H 0.077 0.923 16 C -0.171 4.171 17 N -0.544 5.544 18 Si 0.779 3.221 19 H -0.195 1.195 20 H -0.215 1.215 21 H -0.193 1.193 22 C -0.225 4.225 23 C -0.223 4.223 24 C -0.140 4.140 25 C 0.076 3.924 26 N -0.405 5.405 27 H 0.086 0.914 28 H 0.115 0.885 29 H 0.082 0.918 30 H 0.099 0.901 31 H 0.111 0.889 32 H 0.084 0.916 33 H 0.070 0.930 34 H 0.179 0.821 35 H 0.151 0.849 36 H 0.044 0.956 37 H 0.105 0.895 38 H 0.066 0.934 39 H 0.103 0.897 40 H 0.099 0.901 41 H 0.105 0.895 42 H 0.105 0.895 43 H 0.153 0.847 44 H 0.240 0.760 45 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -21.025 2.593 -0.102 21.185 hybrid contribution 0.797 0.552 0.455 1.071 sum -20.229 3.144 0.353 20.475 Atomic orbital electron populations 1.21862 0.90688 1.03382 1.04084 1.22760 0.96580 0.92694 0.86760 1.22404 1.01636 0.95745 1.04044 1.85973 1.27884 1.68363 1.40456 1.18671 0.86498 0.96351 0.94113 1.21199 0.94411 1.04544 0.99016 1.21119 0.95798 0.95206 0.97944 1.18871 0.91160 1.04772 0.98244 1.21630 0.86250 0.78094 0.79547 1.90688 1.76069 1.37945 1.40367 1.86485 1.30416 1.62859 1.44240 1.22599 0.80669 0.89529 1.01906 1.19052 0.96564 0.93595 0.90211 1.20666 1.48726 0.91144 0.92809 0.92330 1.25642 0.94213 1.02135 0.95079 1.69958 1.50507 1.36246 0.97640 0.85688 0.79086 0.80538 0.76836 1.19470 1.21513 1.19347 1.23001 0.93145 1.00797 1.05606 1.22966 1.00065 1.02931 0.96316 1.20404 0.92559 1.02814 0.98210 1.16809 0.90831 0.96142 0.88624 1.42148 1.19563 1.61228 1.17574 0.91444 0.88479 0.91776 0.90117 0.88904 0.91646 0.93014 0.82125 0.84934 0.95599 0.89543 0.93408 0.89718 0.90079 0.89525 0.89496 0.84689 0.75954 0.76295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.56 71.98 0.69 -0.75 16 2 C 0.07 1.00 2.84 30.60 0.09 1.09 16 3 C -0.18 -2.55 9.17 71.98 0.66 -1.89 16 4 O -0.31 -6.39 9.03 -91.38 -0.82 -7.22 16 5 C 0.09 2.36 6.63 22.72 0.15 2.51 16 6 C -0.17 -4.54 8.21 22.30 0.18 -4.35 16 7 C -0.08 -2.71 9.60 22.53 0.22 -2.49 16 8 C -0.13 -4.99 5.87 -20.10 -0.12 -5.11 16 9 C 0.50 23.85 7.88 70.26 0.55 24.40 16 10 O -0.56 -28.96 16.05 19.81 0.32 -28.65 16 11 O -0.33 -16.69 8.98 -56.47 -0.51 -17.19 16 12 C 0.13 6.62 4.45 71.98 0.32 6.94 16 13 C 0.01 0.31 2.21 -52.93 -0.12 0.20 16 14 C -0.50 -27.21 8.79 25.60 0.23 -26.98 16 15 H 0.06 3.15 7.82 -2.91 -0.02 3.12 16 16 C 0.03 1.60 5.35 84.65 0.45 2.06 16 17 N -0.91 -52.67 10.16 21.45 0.22 -52.45 16 18 Si 0.95 43.84 29.54 68.60 2.03 45.87 16 19 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 20 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 21 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 22 C -0.19 -8.25 9.96 30.62 0.30 -7.94 16 23 C -0.19 -7.84 9.92 30.62 0.30 -7.53 16 24 C -0.12 -3.85 9.43 22.65 0.21 -3.64 16 25 C 0.18 4.86 6.76 38.17 0.26 5.12 16 26 N -0.86 -16.81 9.09 -51.14 -0.46 -17.27 16 27 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.08 1.14 6.30 -2.39 -0.02 1.12 16 31 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.05 0.91 6.90 -2.39 -0.02 0.89 16 34 H 0.16 3.25 5.40 -2.91 -0.02 3.24 16 35 H 0.13 4.65 7.61 -2.91 -0.02 4.63 16 36 H 0.03 1.27 8.09 -2.39 -0.02 1.25 16 37 H 0.09 5.10 5.76 -2.39 -0.01 5.08 16 38 H 0.26 14.64 8.32 -92.71 -0.77 13.87 16 39 H 0.08 3.66 8.14 -2.38 -0.02 3.64 16 40 H 0.08 3.30 8.14 -2.39 -0.02 3.28 16 41 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 42 H 0.09 3.49 8.14 -2.39 -0.02 3.48 16 43 H 0.14 4.48 7.65 -2.91 -0.02 4.46 16 44 H 0.41 6.65 8.18 -92.71 -0.76 5.89 16 45 H 0.41 6.63 8.84 -92.71 -0.82 5.81 16 Total: -1.00 -68.24 374.94 4.60 -63.64 By element: Atomic # 1 Polarization: 32.21 SS G_CDS: -0.55 Total: 31.66 kcal Atomic # 6 Polarization: -22.77 SS G_CDS: 4.38 Total: -18.39 kcal Atomic # 7 Polarization: -69.47 SS G_CDS: -0.25 Total: -69.72 kcal Atomic # 8 Polarization: -52.04 SS G_CDS: -1.01 Total: -53.05 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -68.24 4.60 -63.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118394917.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.371 kcal (2) G-P(sol) polarization free energy of solvation -68.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds