Wall clock time and date at job start Tue Mar 31 2020 13:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46756 * 2 1 4 4 O 1.42894 * 109.47056 * 179.97438 * 3 2 1 5 5 C 1.35801 * 117.00142 * 180.02562 * 4 3 2 6 6 C 1.38787 * 119.93253 * 0.02562 * 5 4 3 7 7 C 1.37800 * 120.18014 * 179.76646 * 6 5 4 8 8 C 1.39759 * 120.03194 * 0.46348 * 7 6 5 9 9 C 1.47479 * 120.07059 * 179.78444 * 8 7 6 10 10 O 1.21504 * 119.99768 * 184.92416 * 9 8 7 11 11 O 1.34746 * 119.99579 * 4.93496 * 9 8 7 12 12 C 1.45210 * 116.99693 * 184.83572 * 11 9 8 13 13 C 1.53001 * 109.47006 * 183.84250 * 12 11 9 14 14 C 1.50696 * 115.54808 * 294.96153 * 13 12 11 15 15 H 1.08004 * 119.99976 * 114.76637 * 14 13 12 16 16 C 1.37880 * 119.99997 * 294.48996 * 14 13 12 17 17 N 1.31515 * 119.99810 * 174.28508 * 16 14 13 18 18 Si 1.86799 * 119.99998 * 354.28021 * 16 14 13 19 19 H 1.48503 * 109.47188 * 93.48435 * 18 16 14 20 20 H 1.48503 * 109.46984 * 213.48265 * 18 16 14 21 21 H 1.48501 * 109.47320 * 333.48400 * 18 16 14 22 22 C 1.52995 * 117.49881 * 80.63281 * 13 12 11 23 23 C 1.53003 * 117.49863 * 149.29547 * 13 12 11 24 24 C 1.39783 * 119.85782 * 359.51973 * 8 7 6 25 25 C 1.38282 * 119.82532 * 0.24460 * 24 8 7 26 26 N 1.39988 * 120.01307 * 179.97438 * 25 24 8 27 27 H 1.09001 * 109.46853 * 299.99498 * 1 2 3 28 28 H 1.09003 * 109.47162 * 60.00195 * 1 2 3 29 29 H 1.09001 * 109.46793 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47322 * 240.00727 * 2 1 3 31 31 H 1.09003 * 109.47162 * 119.99805 * 2 1 3 32 32 H 1.09002 * 109.47321 * 60.00152 * 3 2 1 33 33 H 1.08998 * 109.47258 * 300.00312 * 3 2 1 34 34 H 1.08006 * 119.90665 * 359.97438 * 6 5 4 35 35 H 1.08005 * 119.98832 * 180.23128 * 7 6 5 36 36 H 1.08992 * 109.47275 * 63.83654 * 12 11 9 37 37 H 1.09003 * 109.46861 * 303.83628 * 12 11 9 38 38 H 0.97001 * 119.99976 * 180.02562 * 17 16 14 39 39 H 1.09003 * 117.49786 * 214.99709 * 22 13 12 40 40 H 1.08994 * 117.50398 * 0.02697 * 22 13 12 41 41 H 1.09005 * 117.49613 * 359.97062 * 23 13 12 42 42 H 1.08998 * 117.49855 * 144.97254 * 23 13 12 43 43 H 1.08001 * 120.08037 * 180.23384 * 24 8 7 44 44 H 0.96993 * 120.00298 * 0.02562 * 26 25 24 45 45 H 0.97007 * 119.99535 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 3.4689 1.4427 0.0006 5 6 4.0854 2.6527 0.0012 6 6 3.3281 3.8157 0.0018 7 6 3.9483 5.0462 0.0073 8 6 5.3436 5.1263 0.0025 9 6 6.0083 6.4428 0.0036 10 8 7.2176 6.5128 -0.0909 11 8 5.2744 7.5679 0.1095 12 6 5.9829 8.8302 -0.0047 13 6 5.0087 9.9853 0.2354 14 6 3.9128 10.1347 -0.7881 15 1 2.8824 9.9830 -0.5021 16 6 4.2250 10.4706 -2.0884 17 7 3.2835 10.4911 -3.0064 18 14 5.9852 10.8966 -2.5461 19 1 6.6784 9.6778 -3.0351 20 1 5.9831 11.9274 -3.6151 21 1 6.6936 11.4234 -1.3519 22 6 4.6730 10.3363 1.6862 23 6 5.5694 11.2637 0.8618 24 6 6.1078 3.9558 0.0023 25 6 5.4793 2.7241 0.0017 26 7 6.2408 1.5494 0.0010 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9564 -0.8899 34 1 2.2497 3.7561 0.0013 35 1 3.3560 5.9493 0.0115 36 1 6.4110 8.9175 -1.0032 37 1 6.7806 8.8676 0.7372 38 1 3.5031 10.7271 -3.9213 39 1 3.6595 10.6754 1.9004 40 1 5.1465 9.7447 2.4697 41 1 6.6322 11.2816 1.1032 42 1 5.1458 12.2128 0.5333 43 1 7.1863 4.0135 0.0025 44 1 7.2094 1.5993 0.0013 45 1 5.7996 0.6855 0.0002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118396365.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:18 Heat of formation + Delta-G solvation = -77.953350 kcal Electronic energy + Delta-G solvation = -26286.263080 eV Core-core repulsion = 22462.818476 eV Total energy + Delta-G solvation = -3823.444604 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.51420 -39.62952 -37.72285 -36.91809 -35.30798 -34.59779 -34.09826 -32.12329 -30.40586 -28.83803 -27.47031 -26.74239 -25.25313 -23.48323 -22.91007 -21.62196 -21.36359 -20.38838 -19.14730 -18.29321 -17.58384 -17.14667 -16.69532 -16.54455 -16.00047 -15.78817 -15.33595 -15.08914 -14.70142 -14.47034 -14.13192 -13.88223 -13.72549 -13.21446 -12.98781 -12.87327 -12.72555 -12.50023 -12.37980 -12.24452 -11.99141 -11.65370 -11.50552 -11.05812 -11.00662 -10.88491 -10.85716 -10.65451 -10.60612 -10.34550 -10.03858 -9.92339 -9.50665 -9.05003 -8.67108 -8.62279 -8.48273 -7.39030 -6.11320 -4.11604 0.90429 1.50419 2.90543 2.91257 3.17923 3.28449 3.38435 3.42788 3.83505 3.94333 4.40950 4.49716 4.53185 4.78903 4.83050 4.87044 4.96428 5.08876 5.11666 5.20045 5.27539 5.32103 5.39777 5.50718 5.57810 5.67624 5.68941 5.74013 5.81668 5.87879 5.90796 6.04111 6.16152 6.31154 6.40175 6.47902 6.53345 6.61666 6.67595 6.88263 7.02206 7.09356 7.17333 7.49065 7.71022 7.71438 8.32728 8.50335 8.92208 9.51435 11.00474 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.015461 B = 0.003021 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.592236 B = 9266.532398 C = 9964.699327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C 0.058 3.942 4 O -0.319 6.319 5 C 0.085 3.915 6 C -0.178 4.178 7 C -0.068 4.068 8 C -0.108 4.108 9 C 0.503 3.497 10 O -0.525 6.525 11 O -0.322 6.322 12 C 0.107 3.893 13 C -0.008 4.008 14 C -0.477 4.477 15 H 0.080 0.920 16 C 0.080 3.920 17 N -0.894 5.894 18 Si 0.858 3.142 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.249 1.249 22 C -0.175 4.175 23 C -0.182 4.182 24 C -0.106 4.106 25 C 0.177 3.823 26 N -0.876 5.876 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.135 0.865 35 H 0.147 0.853 36 H 0.061 0.939 37 H 0.051 0.949 38 H 0.265 0.735 39 H 0.088 0.912 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.093 0.907 43 H 0.140 0.860 44 H 0.398 0.602 45 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.705 -20.217 7.151 21.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.017 4.017 4 O -0.233 6.233 5 C 0.037 3.963 6 C -0.197 4.197 7 C -0.088 4.088 8 C -0.110 4.110 9 C 0.349 3.651 10 O -0.417 6.417 11 O -0.236 6.236 12 C 0.033 3.967 13 C -0.009 4.009 14 C -0.515 4.515 15 H 0.098 0.902 16 C -0.123 4.123 17 N -0.531 5.531 18 Si 0.686 3.314 19 H -0.205 1.205 20 H -0.215 1.215 21 H -0.172 1.172 22 C -0.212 4.212 23 C -0.220 4.220 24 C -0.129 4.129 25 C 0.074 3.926 26 N -0.419 5.419 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.153 0.847 35 H 0.165 0.835 36 H 0.079 0.921 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.107 0.893 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.111 0.889 43 H 0.158 0.842 44 H 0.226 0.774 45 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -0.378 -20.248 6.937 21.406 hybrid contribution 1.111 0.197 -0.526 1.245 sum 0.733 -20.050 6.411 21.063 Atomic orbital electron populations 1.21698 0.94191 1.02472 1.02466 1.21476 0.96126 0.94887 1.03487 1.22892 0.78228 0.98690 1.01855 1.85868 1.21442 1.26771 1.89188 1.18655 0.90284 0.84822 1.02589 1.21018 1.00096 0.91393 1.07238 1.21244 0.93254 0.98209 0.96063 1.18820 0.93628 0.89990 1.08514 1.21124 0.85449 0.85708 0.72866 1.90765 1.15446 1.88400 1.47058 1.86632 1.41375 1.14356 1.81271 1.22967 0.93579 0.79807 1.00319 1.19327 0.97378 0.90292 0.93887 1.20222 0.92470 1.47108 0.91653 0.90178 1.24910 0.96816 0.94439 0.96121 1.69886 1.32971 1.47997 1.02223 0.87150 0.86304 0.78698 0.79282 1.20460 1.21460 1.17215 1.22788 1.00043 1.03935 0.94460 1.23084 0.97067 0.96099 1.05717 1.20439 1.00226 0.88723 1.03523 1.16794 0.87263 0.87668 1.00916 1.42182 1.08072 1.05067 1.86541 0.92243 0.92193 0.91814 0.90940 0.90975 0.91816 0.91734 0.84704 0.83478 0.92132 0.93075 0.92531 0.89330 0.90799 0.91076 0.88883 0.84196 0.77374 0.76980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.91 37.16 0.37 -0.43 16 2 C -0.12 -0.79 6.30 -26.73 -0.17 -0.96 16 3 C 0.06 0.49 4.74 37.16 0.18 0.66 16 4 O -0.32 -3.45 9.36 -19.12 -0.18 -3.62 16 5 C 0.09 1.08 6.71 -38.88 -0.26 0.82 16 6 C -0.18 -2.30 9.01 -39.54 -0.36 -2.66 16 7 C -0.07 -1.05 9.60 -39.17 -0.38 -1.42 16 8 C -0.11 -1.83 5.87 -104.99 -0.62 -2.44 16 9 C 0.50 10.27 7.88 34.50 0.27 10.55 16 10 O -0.52 -11.50 16.07 -19.27 -0.31 -11.81 16 11 O -0.32 -7.16 9.40 -40.62 -0.38 -7.54 16 12 C 0.11 2.45 5.01 37.16 0.19 2.64 16 13 C -0.01 -0.18 1.06 -155.66 -0.17 -0.35 16 14 C -0.48 -13.25 9.33 -34.44 -0.32 -13.57 16 15 H 0.08 2.41 8.06 -52.48 -0.42 1.98 16 16 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16 17 N -0.89 -26.99 13.96 55.43 0.77 -26.21 16 18 Si 0.86 21.45 24.98 -169.99 -4.25 17.21 16 19 H -0.28 -7.05 7.03 56.52 0.40 -6.65 16 20 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 21 H -0.25 -5.78 5.72 56.52 0.32 -5.45 16 22 C -0.18 -3.55 9.96 -26.69 -0.27 -3.82 16 23 C -0.18 -3.80 8.01 -26.69 -0.21 -4.01 16 24 C -0.11 -1.55 9.43 -38.99 -0.37 -1.91 16 25 C 0.18 2.25 6.76 -83.62 -0.57 1.69 16 26 N -0.88 -8.34 9.09 32.48 0.30 -8.04 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.49 7.65 -51.93 -0.40 0.10 16 33 H 0.06 0.52 7.65 -51.93 -0.40 0.13 16 34 H 0.14 1.42 6.27 -52.48 -0.33 1.09 16 35 H 0.15 2.37 7.61 -52.48 -0.40 1.97 16 36 H 0.06 1.48 5.08 -51.93 -0.26 1.22 16 37 H 0.05 1.08 7.96 -51.93 -0.41 0.66 16 38 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 39 H 0.09 1.77 8.14 -51.93 -0.42 1.34 16 40 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 41 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 42 H 0.09 1.96 8.14 -51.93 -0.42 1.53 16 43 H 0.14 1.95 7.65 -52.49 -0.40 1.55 16 44 H 0.40 3.06 8.84 -40.82 -0.36 2.69 16 45 H 0.40 3.35 8.18 -40.82 -0.33 3.02 16 LS Contribution 374.31 15.07 5.64 5.64 Total: -1.00 -32.33 374.31 -7.92 -40.25 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -6.74 Total: 7.18 kcal Atomic # 6 Polarization: -10.28 SS G_CDS: -2.77 Total: -13.05 kcal Atomic # 7 Polarization: -35.32 SS G_CDS: 1.07 Total: -34.25 kcal Atomic # 8 Polarization: -22.11 SS G_CDS: -0.87 Total: -22.98 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.25 Total: 17.21 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.33 -7.92 -40.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118396365.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.700 kcal (2) G-P(sol) polarization free energy of solvation -32.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds