Wall clock time and date at job start Tue Mar 31 2020 13:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35074 * 119.99790 * 2 1 4 4 C 1.41169 * 120.00549 * 174.46652 * 3 2 1 5 5 O 1.21726 * 119.99269 * 359.12632 * 4 3 2 6 6 O 1.34976 * 120.00514 * 179.12330 * 4 3 2 7 7 C 1.42899 * 116.99802 * 179.97438 * 6 4 3 8 8 C 1.52999 * 109.47293 * 210.00160 * 7 6 4 9 9 C 1.53005 * 109.47168 * 90.00291 * 7 6 4 10 10 N 1.36624 * 120.00138 * 179.97438 * 2 1 3 11 11 C 1.39942 * 120.00566 * 302.37975 * 10 2 1 12 12 C 1.38895 * 120.01549 * 351.06136 * 11 10 2 13 13 C 1.38080 * 119.97627 * 179.74088 * 12 11 10 14 14 C 1.38725 * 120.02419 * 0.53948 * 13 12 11 15 15 O 1.35975 * 119.98486 * 179.69800 * 14 13 12 16 16 C 1.42899 * 116.99801 * 0.02562 * 15 14 13 17 17 C 1.50696 * 109.47201 * 179.97438 * 16 15 14 18 18 H 1.08006 * 119.99485 * 359.97438 * 17 16 15 19 19 C 1.37871 * 120.00280 * 180.02562 * 17 16 15 20 20 N 1.31519 * 120.00187 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00246 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47280 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47547 * 120.00047 * 21 19 17 24 24 H 1.48506 * 109.47327 * 239.99957 * 21 19 17 25 25 C 1.38730 * 120.03398 * 359.71722 * 14 13 12 26 26 C 1.38077 * 120.02335 * 0.02562 * 25 14 13 27 27 H 1.09001 * 109.47145 * 90.46872 * 1 2 3 28 28 H 1.08998 * 109.46934 * 210.46596 * 1 2 3 29 29 H 1.08995 * 109.47331 * 330.47052 * 1 2 3 30 30 H 1.08007 * 119.99918 * 354.46813 * 3 2 1 31 31 H 1.08998 * 109.47343 * 330.00150 * 7 6 4 32 32 H 1.08998 * 109.46918 * 300.00251 * 8 7 6 33 33 H 1.09002 * 109.46862 * 59.99651 * 8 7 6 34 34 H 1.08993 * 109.47533 * 180.02562 * 8 7 6 35 35 H 1.09006 * 109.46887 * 299.99970 * 9 7 6 36 36 H 1.08998 * 109.47103 * 59.99712 * 9 7 6 37 37 H 1.08990 * 109.47300 * 179.97438 * 9 7 6 38 38 H 0.97001 * 119.99778 * 122.37570 * 10 2 1 39 39 H 1.07994 * 120.01033 * 359.97438 * 12 11 10 40 40 H 1.08004 * 119.99020 * 180.25410 * 13 12 11 41 41 H 1.09000 * 109.47201 * 300.00078 * 16 15 14 42 42 H 1.09003 * 109.47124 * 60.00106 * 16 15 14 43 43 H 0.96995 * 120.00241 * 179.97438 * 20 19 17 44 44 H 1.08004 * 119.98881 * 180.02562 * 25 14 13 45 45 H 1.07998 * 120.00944 * 179.97438 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1823 1.1698 0.0000 4 6 3.5891 1.1728 0.1179 5 8 4.1921 0.1220 0.2355 6 8 4.2654 2.3408 0.1001 7 6 5.6872 2.2691 0.2246 8 6 6.2034 3.5345 0.9123 9 6 6.3156 2.1517 -1.1655 10 7 2.1901 -1.1832 0.0005 11 6 1.9780 -2.1133 1.0244 12 6 1.2194 -1.7640 2.1342 13 6 1.0062 -2.6841 3.1414 14 6 1.5586 -3.9534 3.0505 15 8 1.3533 -4.8568 4.0458 16 6 0.5584 -4.4311 5.1544 17 6 0.4402 -5.5568 6.1494 18 1 0.9235 -6.5028 5.9543 19 6 -0.2856 -5.3794 7.3081 20 7 -0.8745 -4.2275 7.5453 21 14 -0.4315 -6.7744 8.5417 22 1 0.3173 -7.9561 8.0436 23 1 0.1336 -6.3434 9.8456 24 1 -1.8619 -7.1331 8.7165 25 6 2.3209 -4.3013 1.9449 26 6 2.5308 -3.3843 0.9342 27 1 -0.3633 -0.0084 -1.0276 28 1 -0.3633 -0.8858 0.5210 29 1 -0.3634 0.8941 0.5065 30 1 1.6460 2.1030 -0.0902 31 1 5.9563 1.3966 0.8198 32 1 5.9343 4.4071 0.3171 33 1 5.7557 3.6182 1.9026 34 1 7.2879 3.4801 1.0069 35 1 5.9478 1.2501 -1.6555 36 1 6.0465 3.0242 -1.7608 37 1 7.4000 2.0974 -1.0706 38 1 2.8222 -1.3786 -0.7089 39 1 0.7934 -0.7744 2.2075 40 1 0.4129 -2.4141 4.0026 41 1 1.0304 -3.5722 5.6314 42 1 -0.4349 -4.1514 4.8032 43 1 -1.3854 -4.1028 8.3603 44 1 2.7504 -5.2898 1.8747 45 1 3.1246 -3.6552 0.0737 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166770549.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:07 Heat of formation + Delta-G solvation = -82.597958 kcal Electronic energy + Delta-G solvation = -25957.768007 eV Core-core repulsion = 22134.121998 eV Total energy + Delta-G solvation = -3823.646009 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.85046 -39.71687 -38.31114 -36.83116 -35.58926 -33.33821 -32.91453 -31.96003 -30.68483 -28.78852 -28.32581 -27.58243 -26.96921 -23.56271 -23.43089 -22.22165 -21.20454 -20.84381 -19.51935 -18.08330 -17.70576 -16.89811 -16.72197 -16.37446 -16.07066 -15.07095 -14.89240 -14.62059 -14.48770 -14.42379 -14.17786 -14.04883 -13.37025 -13.31898 -13.26355 -12.95202 -12.79309 -12.59585 -12.54386 -12.36032 -12.29815 -12.05051 -11.97326 -11.62861 -11.16410 -11.11328 -10.94468 -10.77547 -10.60644 -10.51121 -10.30385 -10.13230 -9.74636 -9.23519 -8.87916 -8.64955 -8.47723 -6.82070 -6.23713 -4.26879 0.81071 1.71876 2.07408 2.82156 3.01822 3.23581 3.30232 3.36014 3.37203 4.19823 4.23975 4.53523 4.59829 4.60612 4.67702 4.91019 5.07933 5.13595 5.14339 5.16845 5.23281 5.25390 5.28726 5.41586 5.45994 5.49803 5.59153 5.71114 5.74361 5.76918 5.80814 5.85429 6.03154 6.07740 6.34910 6.47533 6.55812 6.59217 6.77934 7.01958 7.08351 7.18048 7.50076 7.65457 7.70576 7.89621 7.98390 8.53107 8.87605 9.38425 10.87670 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.018406 B = 0.002347 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.857773 B =11926.866214 C =12273.503994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.258 3.742 3 C -0.290 4.290 4 C 0.501 3.499 5 O -0.516 6.516 6 O -0.353 6.353 7 C 0.079 3.921 8 C -0.149 4.149 9 C -0.168 4.168 10 N -0.671 5.671 11 C 0.134 3.866 12 C -0.135 4.135 13 C -0.174 4.174 14 C 0.120 3.880 15 O -0.319 6.319 16 C 0.193 3.807 17 C -0.522 4.522 18 H 0.071 0.929 19 C 0.059 3.941 20 N -0.895 5.895 21 Si 0.912 3.088 22 H -0.269 1.269 23 H -0.281 1.281 24 H -0.281 1.281 25 C -0.131 4.131 26 C -0.129 4.129 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.143 0.857 31 H 0.082 0.918 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.413 0.587 39 H 0.120 0.880 40 H 0.136 0.864 41 H 0.020 0.980 42 H 0.020 0.980 43 H 0.266 0.734 44 H 0.128 0.872 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.583 14.690 -18.689 24.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.154 3.846 3 C -0.315 4.315 4 C 0.351 3.649 5 O -0.408 6.408 6 O -0.271 6.271 7 C 0.024 3.976 8 C -0.206 4.206 9 C -0.226 4.226 10 N -0.297 5.297 11 C 0.038 3.962 12 C -0.157 4.157 13 C -0.193 4.193 14 C 0.072 3.928 15 O -0.232 6.232 16 C 0.120 3.880 17 C -0.560 4.560 18 H 0.089 0.911 19 C -0.143 4.143 20 N -0.533 5.533 21 Si 0.739 3.261 22 H -0.194 1.194 23 H -0.207 1.207 24 H -0.207 1.207 25 C -0.151 4.151 26 C -0.150 4.150 27 H 0.107 0.893 28 H 0.106 0.894 29 H 0.104 0.896 30 H 0.160 0.840 31 H 0.100 0.900 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.252 0.748 39 H 0.137 0.863 40 H 0.153 0.847 41 H 0.038 0.962 42 H 0.038 0.962 43 H 0.076 0.924 44 H 0.146 0.854 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 7.668 14.296 -18.396 24.528 hybrid contribution 0.129 -0.326 0.487 0.600 sum 7.797 13.970 -17.909 24.015 Atomic orbital electron populations 1.21469 0.90157 1.05048 1.03944 1.20149 0.93440 0.85207 0.85810 1.20952 0.91606 0.98865 1.20045 1.19733 0.89383 0.81727 0.74082 1.90881 1.70818 1.32106 1.46968 1.86270 1.21682 1.34976 1.84172 1.22229 0.77720 1.00213 0.97484 1.21886 1.01093 0.96596 1.01029 1.22220 1.01168 1.02637 0.96547 1.41551 1.45638 1.15313 1.27208 1.17474 1.00295 0.89329 0.89068 1.20535 1.02054 0.99708 0.93362 1.21268 1.03911 0.93526 1.00606 1.19153 0.94729 0.89102 0.89815 1.86122 1.68792 1.38722 1.29607 1.20607 0.89102 0.97075 0.81182 1.21027 1.32842 0.99228 1.02892 0.91120 1.24939 0.94936 0.96537 0.97880 1.69959 1.33282 1.23511 1.26591 0.86205 0.77963 0.81539 0.80374 1.19363 1.20682 1.20690 1.20194 1.01695 1.00265 0.92908 1.20295 1.03250 0.91621 0.99839 0.89337 0.89423 0.89560 0.83961 0.89972 0.91601 0.91699 0.90648 0.92146 0.91818 0.91047 0.74805 0.86252 0.84666 0.96214 0.96201 0.92425 0.85389 0.86047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.25 36.01 0.33 -0.87 16 2 C 0.26 2.73 5.25 -81.58 -0.43 2.30 16 3 C -0.29 -3.10 9.59 -39.59 -0.38 -3.48 16 4 C 0.50 6.49 7.63 31.84 0.24 6.73 16 5 O -0.52 -7.85 13.44 -19.44 -0.26 -8.11 16 6 O -0.35 -4.21 9.75 -41.25 -0.40 -4.61 16 7 C 0.08 0.80 3.14 -26.73 -0.08 0.72 16 8 C -0.15 -1.14 9.56 37.16 0.36 -0.79 16 9 C -0.17 -1.42 9.53 37.16 0.35 -1.06 16 10 N -0.67 -8.26 3.56 -6.77 -0.02 -8.29 16 11 C 0.13 2.00 6.38 -83.67 -0.53 1.46 16 12 C -0.14 -2.18 8.08 -39.40 -0.32 -2.50 16 13 C -0.17 -3.33 9.03 -39.46 -0.36 -3.68 16 14 C 0.12 2.49 6.69 -39.22 -0.26 2.23 16 15 O -0.32 -7.84 10.12 -19.66 -0.20 -8.04 16 16 C 0.19 5.18 4.49 36.00 0.16 5.34 16 17 C -0.52 -15.02 9.43 -34.44 -0.32 -15.34 16 18 H 0.07 2.02 7.81 -52.48 -0.41 1.61 16 19 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 20 N -0.89 -26.00 13.29 55.43 0.74 -25.26 16 21 Si 0.91 21.37 29.54 -169.99 -5.02 16.35 16 22 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 C -0.13 -2.30 9.98 -39.46 -0.39 -2.69 16 26 C -0.13 -1.94 9.90 -39.40 -0.39 -2.33 16 27 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.09 0.85 6.28 -51.93 -0.33 0.52 16 29 H 0.09 0.56 8.07 -51.93 -0.42 0.14 16 30 H 0.14 1.18 8.06 -52.48 -0.42 0.75 16 31 H 0.08 0.97 7.11 -51.93 -0.37 0.60 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.41 4.80 7.90 -40.82 -0.32 4.48 16 39 H 0.12 1.69 6.12 -52.49 -0.32 1.37 16 40 H 0.14 2.72 6.29 -52.48 -0.33 2.39 16 41 H 0.02 0.55 7.66 -51.93 -0.40 0.16 16 42 H 0.02 0.55 7.66 -51.93 -0.40 0.15 16 43 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 44 H 0.13 2.05 8.06 -52.48 -0.42 1.63 16 45 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 378.80 15.07 5.71 5.71 Total: -1.00 -32.00 378.80 -8.24 -40.24 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -6.66 Total: 4.41 kcal Atomic # 6 Polarization: -10.28 SS G_CDS: -2.12 Total: -12.40 kcal Atomic # 7 Polarization: -34.26 SS G_CDS: 0.71 Total: -33.54 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -0.86 Total: -20.77 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.00 -8.24 -40.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166770549.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.356 kcal (2) G-P(sol) polarization free energy of solvation -32.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds