Wall clock time and date at job start Tue Mar 31 2020 13:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35074 * 119.99790 * 2 1 4 4 C 1.41169 * 120.00549 * 174.46652 * 3 2 1 5 5 O 1.21726 * 119.99269 * 359.12632 * 4 3 2 6 6 O 1.34976 * 120.00514 * 179.12330 * 4 3 2 7 7 C 1.42899 * 116.99802 * 179.97438 * 6 4 3 8 8 C 1.52999 * 109.47293 * 210.00160 * 7 6 4 9 9 C 1.53005 * 109.47168 * 90.00291 * 7 6 4 10 10 N 1.36624 * 120.00138 * 179.97438 * 2 1 3 11 11 C 1.39942 * 120.00566 * 302.37975 * 10 2 1 12 12 C 1.38895 * 120.01549 * 351.06136 * 11 10 2 13 13 C 1.38080 * 119.97627 * 179.74088 * 12 11 10 14 14 C 1.38725 * 120.02419 * 0.53948 * 13 12 11 15 15 O 1.35975 * 119.98486 * 179.69800 * 14 13 12 16 16 C 1.42899 * 116.99801 * 0.02562 * 15 14 13 17 17 C 1.50696 * 109.47201 * 179.97438 * 16 15 14 18 18 H 1.08006 * 119.99485 * 359.97438 * 17 16 15 19 19 C 1.37871 * 120.00280 * 180.02562 * 17 16 15 20 20 N 1.31519 * 120.00187 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00246 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47280 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47547 * 120.00047 * 21 19 17 24 24 H 1.48506 * 109.47327 * 239.99957 * 21 19 17 25 25 C 1.38730 * 120.03398 * 359.71722 * 14 13 12 26 26 C 1.38077 * 120.02335 * 0.02562 * 25 14 13 27 27 H 1.09001 * 109.47145 * 90.46872 * 1 2 3 28 28 H 1.08998 * 109.46934 * 210.46596 * 1 2 3 29 29 H 1.08995 * 109.47331 * 330.47052 * 1 2 3 30 30 H 1.08007 * 119.99918 * 354.46813 * 3 2 1 31 31 H 1.08998 * 109.47343 * 330.00150 * 7 6 4 32 32 H 1.08998 * 109.46918 * 300.00251 * 8 7 6 33 33 H 1.09002 * 109.46862 * 59.99651 * 8 7 6 34 34 H 1.08993 * 109.47533 * 180.02562 * 8 7 6 35 35 H 1.09006 * 109.46887 * 299.99970 * 9 7 6 36 36 H 1.08998 * 109.47103 * 59.99712 * 9 7 6 37 37 H 1.08990 * 109.47300 * 179.97438 * 9 7 6 38 38 H 0.97001 * 119.99778 * 122.37570 * 10 2 1 39 39 H 1.07994 * 120.01033 * 359.97438 * 12 11 10 40 40 H 1.08004 * 119.99020 * 180.25410 * 13 12 11 41 41 H 1.09000 * 109.47201 * 300.00078 * 16 15 14 42 42 H 1.09003 * 109.47124 * 60.00106 * 16 15 14 43 43 H 0.96995 * 120.00241 * 179.97438 * 20 19 17 44 44 H 1.08004 * 119.98881 * 180.02562 * 25 14 13 45 45 H 1.07998 * 120.00944 * 179.97438 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1823 1.1698 0.0000 4 6 3.5891 1.1728 0.1179 5 8 4.1921 0.1220 0.2355 6 8 4.2654 2.3408 0.1001 7 6 5.6872 2.2691 0.2246 8 6 6.2034 3.5345 0.9123 9 6 6.3156 2.1517 -1.1655 10 7 2.1901 -1.1832 0.0005 11 6 1.9780 -2.1133 1.0244 12 6 1.2194 -1.7640 2.1342 13 6 1.0062 -2.6841 3.1414 14 6 1.5586 -3.9534 3.0505 15 8 1.3533 -4.8568 4.0458 16 6 0.5584 -4.4311 5.1544 17 6 0.4402 -5.5568 6.1494 18 1 0.9235 -6.5028 5.9543 19 6 -0.2856 -5.3794 7.3081 20 7 -0.8745 -4.2275 7.5453 21 14 -0.4315 -6.7744 8.5417 22 1 0.3173 -7.9561 8.0436 23 1 0.1336 -6.3434 9.8456 24 1 -1.8619 -7.1331 8.7165 25 6 2.3209 -4.3013 1.9449 26 6 2.5308 -3.3843 0.9342 27 1 -0.3633 -0.0084 -1.0276 28 1 -0.3633 -0.8858 0.5210 29 1 -0.3634 0.8941 0.5065 30 1 1.6460 2.1030 -0.0902 31 1 5.9563 1.3966 0.8198 32 1 5.9343 4.4071 0.3171 33 1 5.7557 3.6182 1.9026 34 1 7.2879 3.4801 1.0069 35 1 5.9478 1.2501 -1.6555 36 1 6.0465 3.0242 -1.7608 37 1 7.4000 2.0974 -1.0706 38 1 2.8222 -1.3786 -0.7089 39 1 0.7934 -0.7744 2.2075 40 1 0.4129 -2.4141 4.0026 41 1 1.0304 -3.5722 5.6314 42 1 -0.4349 -4.1514 4.8032 43 1 -1.3854 -4.1028 8.3603 44 1 2.7504 -5.2898 1.8747 45 1 3.1246 -3.6552 0.0737 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166770549.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:06 Heat of formation + Delta-G solvation = -100.019222 kcal Electronic energy + Delta-G solvation = -25958.523450 eV Core-core repulsion = 22134.121998 eV Total energy + Delta-G solvation = -3824.401452 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.84107 -41.02989 -39.62507 -38.03383 -36.80652 -35.03450 -34.13665 -33.04897 -32.05847 -30.10263 -29.57895 -28.57951 -28.22260 -25.40637 -24.40463 -23.58563 -22.61712 -21.75803 -20.51611 -19.28246 -19.03228 -18.42828 -18.26661 -17.70085 -17.01772 -16.74057 -16.41317 -16.14330 -15.70781 -15.54227 -15.35760 -15.01017 -14.67271 -14.41608 -14.13316 -14.05594 -13.90402 -13.79402 -13.60658 -13.33351 -13.20431 -13.17510 -13.05136 -12.92783 -12.87683 -12.72079 -12.35232 -12.28615 -11.88054 -11.81708 -11.56454 -11.37000 -11.29152 -10.98235 -10.66456 -10.03462 -9.88491 -8.39054 -8.15943 -6.52964 -0.13709 0.35428 0.70239 1.39207 1.40684 1.55405 1.95725 2.07972 2.27887 2.35009 2.83510 2.85826 2.95604 3.77905 3.84101 3.86499 3.95205 3.96824 4.14715 4.29889 4.32643 4.40661 4.43799 4.53783 4.65397 4.68345 4.71788 4.76494 4.77574 4.82545 4.88340 4.99563 5.04919 5.06775 5.12121 5.14554 5.20509 5.29036 5.32436 5.43712 5.57205 5.61121 5.72568 5.86208 6.33046 6.53427 6.64433 6.86079 6.92324 7.19551 8.73537 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.018406 B = 0.002347 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.857773 B =11926.866214 C =12273.503994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.251 3.749 3 C -0.286 4.286 4 C 0.493 3.507 5 O -0.546 6.546 6 O -0.356 6.356 7 C 0.069 3.931 8 C -0.144 4.144 9 C -0.163 4.163 10 N -0.668 5.668 11 C 0.155 3.845 12 C -0.138 4.138 13 C -0.183 4.183 14 C 0.069 3.931 15 O -0.340 6.340 16 C 0.213 3.787 17 C -0.556 4.556 18 H 0.065 0.935 19 C 0.010 3.990 20 N -0.926 5.926 21 Si 0.988 3.012 22 H -0.264 1.264 23 H -0.270 1.270 24 H -0.269 1.269 25 C -0.126 4.126 26 C -0.126 4.126 27 H 0.112 0.888 28 H 0.071 0.929 29 H 0.106 0.894 30 H 0.171 0.829 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.057 0.943 34 H 0.094 0.906 35 H 0.044 0.956 36 H 0.074 0.926 37 H 0.088 0.912 38 H 0.418 0.582 39 H 0.139 0.861 40 H 0.113 0.887 41 H -0.003 1.003 42 H 0.001 0.999 43 H 0.274 0.726 44 H 0.140 0.860 45 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.961 15.790 -20.147 26.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.149 3.851 3 C -0.310 4.310 4 C 0.344 3.656 5 O -0.440 6.440 6 O -0.273 6.273 7 C 0.014 3.986 8 C -0.201 4.201 9 C -0.220 4.220 10 N -0.294 5.294 11 C 0.057 3.943 12 C -0.159 4.159 13 C -0.202 4.202 14 C 0.023 3.977 15 O -0.255 6.255 16 C 0.140 3.860 17 C -0.593 4.593 18 H 0.084 0.916 19 C -0.189 4.189 20 N -0.564 5.564 21 Si 0.810 3.190 22 H -0.188 1.188 23 H -0.195 1.195 24 H -0.194 1.194 25 C -0.145 4.145 26 C -0.147 4.147 27 H 0.130 0.870 28 H 0.090 0.910 29 H 0.125 0.875 30 H 0.188 0.812 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.076 0.924 34 H 0.113 0.887 35 H 0.063 0.937 36 H 0.093 0.907 37 H 0.107 0.893 38 H 0.258 0.742 39 H 0.157 0.843 40 H 0.131 0.869 41 H 0.015 0.985 42 H 0.019 0.981 43 H 0.083 0.917 44 H 0.158 0.842 45 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 8.052 15.458 -19.906 26.458 hybrid contribution 0.107 -0.454 0.734 0.870 sum 8.159 15.003 -19.172 25.675 Atomic orbital electron populations 1.21527 0.87985 1.05252 1.05517 1.20590 0.94670 0.84415 0.85406 1.21230 0.90611 1.00065 1.19085 1.20209 0.90282 0.81576 0.73496 1.90864 1.71598 1.33053 1.48467 1.86267 1.22709 1.34511 1.83857 1.22473 0.77018 1.00594 0.98505 1.21896 1.02166 0.95620 1.00437 1.22186 1.02114 1.02326 0.95372 1.41556 1.45904 1.15351 1.26638 1.17559 0.98134 0.89657 0.88904 1.20628 1.02440 0.99896 0.92933 1.21164 1.04182 0.93905 1.00998 1.19532 0.98037 0.89625 0.90520 1.86032 1.69234 1.40140 1.30082 1.20121 0.88264 0.95846 0.81801 1.21361 1.34058 0.99592 1.04339 0.91627 1.25972 0.93868 0.99457 0.99625 1.70062 1.33406 1.25500 1.27447 0.85063 0.78530 0.77907 0.77468 1.18789 1.19534 1.19375 1.20410 1.00568 1.01379 0.92136 1.20623 1.02958 0.91081 1.00011 0.86960 0.90998 0.87536 0.81182 0.92191 0.90553 0.92418 0.88737 0.93704 0.90696 0.89272 0.74218 0.84311 0.86880 0.98498 0.98077 0.91736 0.84221 0.82639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.25 71.24 0.66 -1.28 16 2 C 0.25 4.70 5.25 41.08 0.22 4.92 16 3 C -0.29 -5.39 9.59 22.26 0.21 -5.18 16 4 C 0.49 12.11 7.63 68.54 0.52 12.63 16 5 O -0.55 -16.19 13.44 19.10 0.26 -15.93 16 6 O -0.36 -8.01 9.75 -58.94 -0.57 -8.58 16 7 C 0.07 1.34 3.14 30.60 0.10 1.43 16 8 C -0.14 -1.97 9.56 71.98 0.69 -1.28 16 9 C -0.16 -2.49 9.53 71.98 0.69 -1.80 16 10 N -0.67 -15.13 3.56 -175.33 -0.62 -15.75 16 11 C 0.15 4.43 6.38 38.16 0.24 4.67 16 12 C -0.14 -4.43 8.08 22.39 0.18 -4.25 16 13 C -0.18 -7.40 9.03 22.35 0.20 -7.20 16 14 C 0.07 3.02 6.69 22.50 0.15 3.17 16 15 O -0.34 -17.81 10.12 -93.27 -0.94 -18.76 16 16 C 0.21 12.23 4.49 71.23 0.32 12.55 16 17 C -0.56 -33.34 9.43 25.60 0.24 -33.10 16 18 H 0.07 3.89 7.81 -2.91 -0.02 3.86 16 19 C 0.01 0.58 5.46 84.65 0.46 1.04 16 20 N -0.93 -55.09 13.29 21.45 0.28 -54.80 16 21 Si 0.99 44.12 29.54 68.60 2.03 46.14 16 22 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 23 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 24 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 25 C -0.13 -4.43 9.98 22.35 0.22 -4.20 16 26 C -0.13 -3.61 9.90 22.39 0.22 -3.39 16 27 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.07 1.25 6.28 -2.39 -0.02 1.23 16 29 H 0.11 1.02 8.07 -2.39 -0.02 1.00 16 30 H 0.17 2.21 8.06 -2.91 -0.02 2.19 16 31 H 0.06 1.42 7.11 -2.39 -0.02 1.40 16 32 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.04 0.82 8.14 -2.38 -0.02 0.80 16 36 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.42 8.84 7.90 -92.71 -0.73 8.10 16 39 H 0.14 3.82 6.12 -2.91 -0.02 3.80 16 40 H 0.11 4.98 6.29 -2.91 -0.02 4.96 16 41 H 0.00 -0.16 7.66 -2.39 -0.02 -0.18 16 42 H 0.00 0.09 7.66 -2.39 -0.02 0.07 16 43 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 44 H 0.14 4.47 8.06 -2.91 -0.02 4.45 16 45 H 0.16 3.40 8.06 -2.91 -0.02 3.38 16 Total: -1.00 -72.41 378.80 6.02 -66.40 By element: Atomic # 1 Polarization: 22.29 SS G_CDS: 0.26 Total: 22.55 kcal Atomic # 6 Polarization: -26.59 SS G_CDS: 5.33 Total: -21.27 kcal Atomic # 7 Polarization: -70.21 SS G_CDS: -0.34 Total: -70.55 kcal Atomic # 8 Polarization: -42.01 SS G_CDS: -1.26 Total: -43.27 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.14 kcal Total: -72.41 6.02 -66.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166770549.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.623 kcal (2) G-P(sol) polarization free energy of solvation -72.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds