Wall clock time and date at job start Tue Mar 31 2020 13:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46870 * 2 1 4 4 O 1.45203 * 109.46975 * 119.99629 * 2 1 3 5 5 C 1.34746 * 116.99816 * 90.00210 * 4 2 1 6 6 O 1.21506 * 119.99848 * 0.02562 * 5 4 2 7 7 C 1.47473 * 120.00136 * 179.97438 * 5 4 2 8 8 C 1.39788 * 120.09211 * 180.02562 * 7 5 4 9 9 C 1.37676 * 119.90409 * 179.97438 * 8 7 5 10 10 C 1.39018 * 120.09214 * 0.03145 * 9 8 7 11 11 O 1.35702 * 119.90573 * 179.97438 * 10 9 8 12 12 C 1.42900 * 117.00062 * 354.31012 * 11 10 9 13 13 H 1.08998 * 110.88849 * 327.34889 * 12 11 10 14 14 C 1.55156 * 111.00408 * 203.46322 * 12 11 10 15 15 C 1.54331 * 102.94184 * 206.38319 * 14 12 11 16 16 N 1.47020 * 107.26887 * 22.19594 * 15 14 12 17 17 C 1.36939 * 125.64672 * 181.02108 * 16 15 14 18 18 H 1.08004 * 119.99698 * 189.73705 * 17 16 15 19 19 C 1.38807 * 119.99761 * 9.72900 * 17 16 15 20 20 N 1.31628 * 119.99921 * 214.94349 * 19 17 16 21 21 Si 1.86792 * 120.00106 * 34.94932 * 19 17 16 22 22 H 1.48496 * 109.47187 * 275.42483 * 21 19 17 23 23 H 1.48500 * 109.47261 * 155.42318 * 21 19 17 24 24 H 1.48504 * 109.47343 * 35.42582 * 21 19 17 25 25 C 1.47422 * 108.70708 * 1.28566 * 16 15 14 26 26 C 1.39010 * 120.18731 * 0.22260 * 10 9 8 27 27 C 1.37674 * 120.09282 * 359.49496 * 26 10 9 28 28 H 1.09001 * 109.47479 * 299.99845 * 1 2 3 29 29 H 1.09003 * 109.47135 * 60.00587 * 1 2 3 30 30 H 1.09003 * 109.46979 * 179.97438 * 1 2 3 31 31 H 1.08989 * 109.47384 * 239.99732 * 2 1 3 32 32 H 1.08998 * 109.47053 * 179.97438 * 3 2 1 33 33 H 1.08994 * 109.46976 * 299.99728 * 3 2 1 34 34 H 1.09001 * 109.46943 * 59.99826 * 3 2 1 35 35 H 1.08000 * 120.05120 * 359.95795 * 8 7 5 36 36 H 1.08001 * 119.95423 * 179.97438 * 9 8 7 37 37 H 1.09002 * 110.71817 * 88.02907 * 14 12 11 38 38 H 1.08994 * 110.87419 * 324.81962 * 14 12 11 39 39 H 1.08991 * 109.88206 * 262.77603 * 15 14 12 40 40 H 1.09004 * 110.00827 * 141.68296 * 15 14 12 41 41 H 0.96999 * 119.99650 * 5.11315 * 20 19 17 42 42 H 1.08998 * 110.37002 * 94.48239 * 25 16 15 43 43 H 1.08999 * 110.37172 * 216.80422 * 25 16 15 44 44 H 1.07997 * 119.95171 * 179.72803 * 26 10 9 45 45 H 1.08004 * 120.05007 * 180.23496 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0140 -0.6844 1.1856 5 6 2.2179 -2.0125 1.0848 6 8 1.9978 -2.5830 0.0349 7 6 2.7093 -2.7735 2.2486 8 6 2.9220 -4.1513 2.1460 9 6 3.3814 -4.8579 3.2347 10 6 3.6330 -4.2031 4.4349 11 8 4.0851 -4.9033 5.5058 12 6 4.1606 -6.3236 5.3673 13 1 3.3692 -6.6931 4.7154 14 6 4.1112 -7.0208 6.7525 15 6 4.8593 -8.3466 6.4991 16 7 5.7158 -8.1461 5.3211 17 6 6.5293 -9.0915 4.7557 18 1 7.2369 -8.8073 3.9908 19 6 6.4447 -10.4149 5.1658 20 7 7.5290 -11.1596 5.2141 21 14 4.7920 -11.1391 5.6489 22 1 4.5083 -10.8196 7.0711 23 1 4.8260 -12.6128 5.4699 24 1 3.7278 -10.5605 4.7898 25 6 5.5587 -6.7570 4.8531 26 6 3.4177 -2.8340 4.5427 27 6 2.9641 -2.1189 3.4572 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 3.1299 1.4426 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 2.7261 -4.6609 1.2141 36 1 3.5456 -5.9224 3.1564 37 1 3.0805 -7.2109 7.0520 38 1 4.6265 -6.4250 7.5058 39 1 4.1433 -9.1451 6.3053 40 1 5.4722 -8.6003 7.3641 41 1 8.3967 -10.7648 5.0351 42 1 6.3357 -6.1228 5.2797 43 1 5.5910 -6.7174 3.7643 44 1 3.6102 -2.3299 5.4783 45 1 2.8007 -1.0546 3.5407 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226073967.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:42 Heat of formation + Delta-G solvation = -69.905106 kcal Electronic energy + Delta-G solvation = -26130.906758 eV Core-core repulsion = 22307.811152 eV Total energy + Delta-G solvation = -3823.095606 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.88272 -40.16393 -38.15890 -36.98905 -36.35102 -33.50967 -32.62673 -31.31763 -30.60722 -29.52844 -28.14832 -27.69652 -24.79699 -24.03597 -23.02693 -21.94165 -20.95779 -20.70945 -20.31358 -18.60191 -18.06357 -17.49961 -16.99056 -16.25155 -15.86826 -15.71126 -15.00069 -14.80673 -14.68112 -14.50614 -14.04458 -13.81864 -13.54593 -13.52904 -13.34522 -12.93933 -12.79735 -12.72676 -12.66495 -12.46543 -12.30003 -12.09700 -11.78606 -11.38634 -11.31455 -11.20442 -11.06931 -10.87844 -10.64166 -10.57506 -10.43698 -10.31502 -9.78460 -9.31786 -9.27494 -8.40899 -8.39651 -7.21373 -6.47522 -3.23783 0.61441 1.16433 2.40766 2.41308 3.07999 3.38746 3.49429 3.61518 3.66468 4.39060 4.45226 4.52024 4.57914 4.59497 4.67655 4.74909 4.84114 4.85326 5.02655 5.11513 5.13833 5.18601 5.20717 5.27973 5.30639 5.35860 5.40098 5.44946 5.62370 5.66662 5.74286 5.79944 5.83352 5.95850 6.05443 6.10993 6.13251 6.28176 6.30780 6.38877 6.46252 6.54254 6.67245 7.34855 7.60179 7.62130 8.26536 8.92130 9.49742 10.15457 11.00496 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.027029 B = 0.002369 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.664907 B =11814.059779 C =12181.393841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.080 3.920 3 C -0.150 4.150 4 O -0.351 6.351 5 C 0.516 3.484 6 O -0.513 6.513 7 C -0.181 4.181 8 C -0.008 4.008 9 C -0.222 4.222 10 C 0.181 3.819 11 O -0.297 6.297 12 C 0.057 3.943 13 H 0.088 0.912 14 C -0.121 4.121 15 C 0.125 3.875 16 N -0.602 5.602 17 C -0.344 4.344 18 H 0.079 0.921 19 C -0.005 4.005 20 N -0.898 5.898 21 Si 1.038 2.962 22 H -0.290 1.290 23 H -0.295 1.295 24 H -0.292 1.292 25 C 0.119 3.881 26 C -0.173 4.173 27 C -0.022 4.022 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.085 0.915 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.139 0.861 36 H 0.145 0.855 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.030 0.970 40 H 0.047 0.953 41 H 0.267 0.733 42 H 0.038 0.962 43 H 0.049 0.951 44 H 0.139 0.861 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.582 23.877 -4.959 27.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.026 3.974 3 C -0.207 4.207 4 O -0.269 6.269 5 C 0.362 3.638 6 O -0.403 6.403 7 C -0.182 4.182 8 C -0.026 4.026 9 C -0.241 4.241 10 C 0.133 3.867 11 O -0.208 6.208 12 C 0.000 4.000 13 H 0.106 0.894 14 C -0.159 4.159 15 C 0.000 4.000 16 N -0.331 5.331 17 C -0.470 4.470 18 H 0.097 0.903 19 C -0.208 4.208 20 N -0.536 5.536 21 Si 0.870 3.130 22 H -0.218 1.218 23 H -0.223 1.223 24 H -0.220 1.220 25 C -0.008 4.008 26 C -0.191 4.191 27 C -0.040 4.040 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.103 0.897 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.157 0.843 36 H 0.162 0.838 37 H 0.094 0.906 38 H 0.101 0.899 39 H 0.047 0.953 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.056 0.944 43 H 0.068 0.932 44 H 0.157 0.843 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -14.252 22.322 -4.686 26.895 hybrid contribution 0.578 1.186 -0.826 1.557 sum -13.673 23.508 -5.512 27.749 Atomic orbital electron populations 1.22216 0.94312 1.03176 1.03047 1.22732 0.94600 0.93020 0.87070 1.21893 1.02211 0.93403 1.03161 1.86605 1.77377 1.21859 1.41013 1.21099 0.74029 0.80801 0.87886 1.90820 1.49133 1.70099 1.30271 1.18915 1.12552 0.93686 0.93080 1.21038 0.91391 0.91737 0.98477 1.21417 1.07914 1.01816 0.92926 1.19464 0.89037 0.91761 0.86419 1.86074 1.78235 1.21100 1.35407 1.24123 1.00139 0.76112 0.99583 0.89415 1.22688 1.01259 0.96656 0.95307 1.21595 0.93021 0.93806 0.91565 1.44691 1.51275 1.07602 1.29560 1.19921 1.14457 0.88794 1.23845 0.90334 1.25741 1.03823 0.92688 0.98532 1.70908 0.98398 1.40229 1.44019 0.84197 0.77157 0.75608 0.76056 1.21786 1.22277 1.21954 1.22088 0.92615 0.88180 0.97898 1.20414 1.06907 0.91250 1.00550 1.21188 0.92359 1.00031 0.90431 0.91484 0.90718 0.91896 0.89671 0.91593 0.90367 0.91332 0.84324 0.83789 0.90559 0.89922 0.95289 0.93490 0.92295 0.94385 0.93233 0.84302 0.84039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.22 9.55 37.16 0.35 -0.87 16 2 C 0.08 0.68 3.19 -26.73 -0.09 0.59 16 3 C -0.15 -0.86 9.57 37.16 0.36 -0.51 16 4 O -0.35 -3.72 9.12 -40.62 -0.37 -4.09 16 5 C 0.52 6.49 7.86 34.49 0.27 6.76 16 6 O -0.51 -7.61 15.60 -19.27 -0.30 -7.91 16 7 C -0.18 -2.20 5.87 -104.97 -0.62 -2.81 16 8 C -0.01 -0.10 9.58 -39.21 -0.38 -0.48 16 9 C -0.22 -2.95 8.91 -39.50 -0.35 -3.31 16 10 C 0.18 2.43 6.69 -39.01 -0.26 2.17 16 11 O -0.30 -4.43 9.93 -18.81 -0.19 -4.61 16 12 C 0.06 0.93 2.81 -24.46 -0.07 0.86 16 13 H 0.09 1.36 6.24 -51.93 -0.32 1.04 16 14 C -0.12 -1.97 6.68 -24.89 -0.17 -2.13 16 15 C 0.13 2.64 5.21 -3.06 -0.02 2.63 16 16 N -0.60 -14.50 3.27 -169.93 -0.56 -15.05 16 17 C -0.34 -9.67 10.33 -15.06 -0.16 -9.83 16 18 H 0.08 2.33 8.06 -52.48 -0.42 1.91 16 19 C 0.00 -0.14 5.35 -17.43 -0.09 -0.23 16 20 N -0.90 -27.43 13.70 55.49 0.76 -26.67 16 21 Si 1.04 25.67 25.13 -169.99 -4.27 21.39 16 22 H -0.29 -6.69 6.62 56.52 0.37 -6.32 16 23 H -0.30 -7.42 7.11 56.52 0.40 -7.02 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 C 0.12 2.35 6.85 -2.41 -0.02 2.34 16 26 C -0.17 -1.94 9.97 -39.50 -0.39 -2.33 16 27 C -0.02 -0.23 9.61 -39.21 -0.38 -0.60 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.09 0.80 7.16 -51.93 -0.37 0.43 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.14 1.69 7.64 -52.49 -0.40 1.29 16 36 H 0.14 1.96 5.61 -52.49 -0.29 1.66 16 37 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.03 0.64 3.93 -51.93 -0.20 0.44 16 40 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.27 8.07 8.73 -40.82 -0.36 7.72 16 42 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.05 0.97 7.78 -51.93 -0.40 0.57 16 44 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 45 H 0.14 1.15 7.60 -52.48 -0.40 0.75 16 LS Contribution 367.86 15.07 5.54 5.54 Total: -1.00 -31.98 367.86 -8.03 -40.01 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -6.65 Total: -0.85 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: -2.00 Total: -7.77 kcal Atomic # 7 Polarization: -41.93 SS G_CDS: 0.20 Total: -41.72 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: -0.86 Total: -16.61 kcal Atomic # 14 Polarization: 25.67 SS G_CDS: -4.27 Total: 21.39 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.98 -8.03 -40.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226073967.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.896 kcal (2) G-P(sol) polarization free energy of solvation -31.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds