Wall clock time and date at job start Tue Mar 31 2020 13:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46870 * 2 1 4 4 O 1.45203 * 109.46975 * 119.99629 * 2 1 3 5 5 C 1.34746 * 116.99816 * 90.00210 * 4 2 1 6 6 O 1.21506 * 119.99848 * 0.02562 * 5 4 2 7 7 C 1.47473 * 120.00136 * 179.97438 * 5 4 2 8 8 C 1.39788 * 120.09211 * 180.02562 * 7 5 4 9 9 C 1.37676 * 119.90409 * 179.97438 * 8 7 5 10 10 C 1.39018 * 120.09214 * 0.03145 * 9 8 7 11 11 O 1.35702 * 119.90573 * 179.97438 * 10 9 8 12 12 C 1.42900 * 117.00062 * 354.31012 * 11 10 9 13 13 H 1.08998 * 110.88849 * 327.34889 * 12 11 10 14 14 C 1.55156 * 111.00408 * 203.46322 * 12 11 10 15 15 C 1.54331 * 102.94184 * 206.38319 * 14 12 11 16 16 N 1.47020 * 107.26887 * 22.19594 * 15 14 12 17 17 C 1.36939 * 125.64672 * 181.02108 * 16 15 14 18 18 H 1.08004 * 119.99698 * 189.73705 * 17 16 15 19 19 C 1.38807 * 119.99761 * 9.72900 * 17 16 15 20 20 N 1.31628 * 119.99921 * 214.94349 * 19 17 16 21 21 Si 1.86792 * 120.00106 * 34.94932 * 19 17 16 22 22 H 1.48496 * 109.47187 * 275.42483 * 21 19 17 23 23 H 1.48500 * 109.47261 * 155.42318 * 21 19 17 24 24 H 1.48504 * 109.47343 * 35.42582 * 21 19 17 25 25 C 1.47422 * 108.70708 * 1.28566 * 16 15 14 26 26 C 1.39010 * 120.18731 * 0.22260 * 10 9 8 27 27 C 1.37674 * 120.09282 * 359.49496 * 26 10 9 28 28 H 1.09001 * 109.47479 * 299.99845 * 1 2 3 29 29 H 1.09003 * 109.47135 * 60.00587 * 1 2 3 30 30 H 1.09003 * 109.46979 * 179.97438 * 1 2 3 31 31 H 1.08989 * 109.47384 * 239.99732 * 2 1 3 32 32 H 1.08998 * 109.47053 * 179.97438 * 3 2 1 33 33 H 1.08994 * 109.46976 * 299.99728 * 3 2 1 34 34 H 1.09001 * 109.46943 * 59.99826 * 3 2 1 35 35 H 1.08000 * 120.05120 * 359.95795 * 8 7 5 36 36 H 1.08001 * 119.95423 * 179.97438 * 9 8 7 37 37 H 1.09002 * 110.71817 * 88.02907 * 14 12 11 38 38 H 1.08994 * 110.87419 * 324.81962 * 14 12 11 39 39 H 1.08991 * 109.88206 * 262.77603 * 15 14 12 40 40 H 1.09004 * 110.00827 * 141.68296 * 15 14 12 41 41 H 0.96999 * 119.99650 * 5.11315 * 20 19 17 42 42 H 1.08998 * 110.37002 * 94.48239 * 25 16 15 43 43 H 1.08999 * 110.37172 * 216.80422 * 25 16 15 44 44 H 1.07997 * 119.95171 * 179.72803 * 26 10 9 45 45 H 1.08004 * 120.05007 * 180.23496 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0140 -0.6844 1.1856 5 6 2.2179 -2.0125 1.0848 6 8 1.9978 -2.5830 0.0349 7 6 2.7093 -2.7735 2.2486 8 6 2.9220 -4.1513 2.1460 9 6 3.3814 -4.8579 3.2347 10 6 3.6330 -4.2031 4.4349 11 8 4.0851 -4.9033 5.5058 12 6 4.1606 -6.3236 5.3673 13 1 3.3692 -6.6931 4.7154 14 6 4.1112 -7.0208 6.7525 15 6 4.8593 -8.3466 6.4991 16 7 5.7158 -8.1461 5.3211 17 6 6.5293 -9.0915 4.7557 18 1 7.2369 -8.8073 3.9908 19 6 6.4447 -10.4149 5.1658 20 7 7.5290 -11.1596 5.2141 21 14 4.7920 -11.1391 5.6489 22 1 4.5083 -10.8196 7.0711 23 1 4.8260 -12.6128 5.4699 24 1 3.7278 -10.5605 4.7898 25 6 5.5587 -6.7570 4.8531 26 6 3.4177 -2.8340 4.5427 27 6 2.9641 -2.1189 3.4572 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 3.1299 1.4426 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 2.7261 -4.6609 1.2141 36 1 3.5456 -5.9224 3.1564 37 1 3.0805 -7.2109 7.0520 38 1 4.6265 -6.4250 7.5058 39 1 4.1433 -9.1451 6.3053 40 1 5.4722 -8.6003 7.3641 41 1 8.3967 -10.7648 5.0351 42 1 6.3357 -6.1228 5.2797 43 1 5.5910 -6.7174 3.7643 44 1 3.6102 -2.3299 5.4783 45 1 2.8007 -1.0546 3.5407 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226073967.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:41 Heat of formation + Delta-G solvation = -88.302566 kcal Electronic energy + Delta-G solvation = -26131.704532 eV Core-core repulsion = 22307.811152 eV Total energy + Delta-G solvation = -3823.893380 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.84923 -41.23497 -39.37896 -38.09779 -37.55209 -34.65470 -34.17192 -32.31445 -31.84863 -31.00563 -29.67779 -28.20041 -26.23972 -25.34250 -24.16651 -22.77541 -22.47028 -21.96211 -21.46197 -19.67231 -19.57199 -18.99672 -17.89916 -17.33738 -17.14715 -16.94857 -16.26745 -15.97694 -15.80436 -15.47733 -15.35732 -15.15347 -14.94435 -14.63164 -14.27438 -14.14045 -14.09035 -13.79568 -13.63268 -13.19327 -13.16790 -13.10211 -13.05822 -13.00007 -12.72288 -12.44315 -12.14587 -11.92294 -11.85664 -11.75037 -11.72483 -11.58290 -11.49613 -11.25818 -10.51463 -10.19950 -9.44688 -9.21859 -8.75057 -5.43052 -0.36481 0.23763 1.41095 1.43186 1.52345 1.58252 1.71942 1.91734 2.53177 2.66193 2.89179 3.39219 3.44276 3.59642 3.68510 3.72360 3.74873 3.81111 3.92040 3.94727 4.06901 4.14260 4.23064 4.28489 4.33038 4.57092 4.65526 4.66319 4.73945 4.76119 4.83297 4.84739 4.85417 4.88339 4.91408 5.07698 5.11839 5.14383 5.19948 5.22606 5.24312 5.45239 5.51294 5.57889 6.05292 6.24302 6.66778 6.75183 7.41646 8.06790 8.74368 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.027029 B = 0.002369 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.664907 B =11814.059779 C =12181.393841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.070 3.930 3 C -0.144 4.144 4 O -0.347 6.347 5 C 0.517 3.483 6 O -0.543 6.543 7 C -0.187 4.187 8 C -0.017 4.017 9 C -0.229 4.229 10 C 0.162 3.838 11 O -0.296 6.296 12 C 0.075 3.925 13 H 0.099 0.901 14 C -0.109 4.109 15 C 0.114 3.886 16 N -0.624 5.624 17 C -0.339 4.339 18 H 0.044 0.956 19 C -0.060 4.060 20 N -0.934 5.934 21 Si 1.085 2.915 22 H -0.261 1.261 23 H -0.303 1.303 24 H -0.275 1.275 25 C 0.114 3.886 26 C -0.163 4.163 27 C -0.009 4.009 28 H 0.077 0.923 29 H 0.095 0.905 30 H 0.041 0.959 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.098 0.902 34 H 0.077 0.923 35 H 0.135 0.865 36 H 0.136 0.864 37 H 0.113 0.887 38 H 0.095 0.905 39 H 0.030 0.970 40 H 0.035 0.965 41 H 0.253 0.747 42 H 0.032 0.968 43 H 0.043 0.957 44 H 0.164 0.836 45 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.288 26.762 -3.777 31.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.016 3.984 3 C -0.201 4.201 4 O -0.264 6.264 5 C 0.365 3.635 6 O -0.436 6.436 7 C -0.188 4.188 8 C -0.036 4.036 9 C -0.247 4.247 10 C 0.115 3.885 11 O -0.207 6.207 12 C 0.018 3.982 13 H 0.116 0.884 14 C -0.146 4.146 15 C -0.010 4.010 16 N -0.352 5.352 17 C -0.467 4.467 18 H 0.062 0.938 19 C -0.257 4.257 20 N -0.574 5.574 21 Si 0.911 3.089 22 H -0.187 1.187 23 H -0.232 1.232 24 H -0.201 1.201 25 C -0.011 4.011 26 C -0.181 4.181 27 C -0.027 4.027 28 H 0.095 0.905 29 H 0.114 0.886 30 H 0.060 0.940 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.117 0.883 34 H 0.096 0.904 35 H 0.153 0.847 36 H 0.154 0.846 37 H 0.131 0.869 38 H 0.114 0.886 39 H 0.047 0.953 40 H 0.053 0.947 41 H 0.062 0.938 42 H 0.050 0.950 43 H 0.061 0.939 44 H 0.182 0.818 45 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -16.978 25.278 -3.493 30.650 hybrid contribution 1.486 0.489 -1.318 2.046 sum -15.491 25.767 -4.810 30.448 Atomic orbital electron populations 1.22215 0.93298 1.02287 1.04619 1.23056 0.95549 0.94099 0.85715 1.21909 1.02042 0.91492 1.04630 1.86592 1.77050 1.20710 1.42073 1.21199 0.73431 0.81412 0.87504 1.90807 1.50531 1.70816 1.31403 1.19059 1.12485 0.93502 0.93785 1.21052 0.91869 0.92330 0.98320 1.21358 1.08470 1.01547 0.93344 1.19711 0.90150 0.92625 0.86027 1.86060 1.78885 1.19961 1.35831 1.23746 0.97543 0.77299 0.99647 0.88365 1.22653 1.02740 0.93868 0.95344 1.21778 0.92681 0.96839 0.89703 1.44704 1.51437 1.08257 1.30846 1.19772 1.14198 0.90030 1.22678 0.93790 1.26970 1.06055 0.93493 0.99160 1.71017 0.98408 1.40742 1.47252 0.83573 0.73251 0.74300 0.77762 1.18725 1.23154 1.20097 1.22148 0.95258 0.86087 0.97651 1.20701 1.05539 0.90210 1.01660 1.21467 0.90760 1.01250 0.89191 0.90451 0.88636 0.93961 0.91189 0.91874 0.88310 0.90430 0.84701 0.84614 0.86913 0.88619 0.95261 0.94739 0.93840 0.94969 0.93871 0.81836 0.81177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.12 9.55 71.98 0.69 -1.43 16 2 C 0.07 1.07 3.19 30.60 0.10 1.17 16 3 C -0.14 -1.30 9.57 71.98 0.69 -0.61 16 4 O -0.35 -6.76 9.12 -56.57 -0.52 -7.27 16 5 C 0.52 12.57 7.86 70.26 0.55 13.12 16 6 O -0.54 -16.21 15.60 19.82 0.31 -15.90 16 7 C -0.19 -4.27 5.87 -20.09 -0.12 -4.39 16 8 C -0.02 -0.43 9.58 22.51 0.22 -0.22 16 9 C -0.23 -5.86 8.91 22.32 0.20 -5.67 16 10 C 0.16 3.97 6.69 22.64 0.15 4.12 16 11 O -0.30 -8.01 9.93 -90.22 -0.90 -8.91 16 12 C 0.07 2.26 2.81 32.07 0.09 2.35 16 13 H 0.10 2.81 6.24 -2.39 -0.01 2.80 16 14 C -0.11 -3.15 6.68 31.78 0.21 -2.94 16 15 C 0.11 4.62 5.21 86.73 0.45 5.07 16 16 N -0.62 -30.04 3.27 -691.54 -2.26 -32.30 16 17 C -0.34 -19.66 10.33 84.03 0.87 -18.79 16 18 H 0.04 2.77 8.06 -2.91 -0.02 2.75 16 19 C -0.06 -3.53 5.35 84.86 0.45 -3.08 16 20 N -0.93 -59.12 13.70 21.65 0.30 -58.83 16 21 Si 1.09 51.77 25.13 68.60 1.72 53.49 16 22 H -0.26 -11.17 6.62 99.48 0.66 -10.52 16 23 H -0.30 -14.79 7.11 99.48 0.71 -14.09 16 24 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 25 C 0.11 4.50 6.85 86.94 0.60 5.10 16 26 C -0.16 -3.11 9.97 22.32 0.22 -2.88 16 27 C -0.01 -0.16 9.61 22.51 0.22 0.06 16 28 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.07 1.29 7.16 -2.39 -0.02 1.28 16 32 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.14 3.38 7.64 -2.91 -0.02 3.36 16 36 H 0.14 3.65 5.61 -2.91 -0.02 3.63 16 37 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 38 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 39 H 0.03 1.21 3.93 -2.39 -0.01 1.20 16 40 H 0.03 1.47 8.14 -2.38 -0.02 1.45 16 41 H 0.25 16.12 8.73 -92.71 -0.81 15.31 16 42 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.04 1.73 7.78 -2.39 -0.02 1.71 16 44 H 0.16 2.33 8.06 -2.91 -0.02 2.31 16 45 H 0.17 2.06 7.60 -2.91 -0.02 2.04 16 Total: -1.00 -71.91 367.86 5.14 -66.78 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: 0.90 Total: 11.94 kcal Atomic # 6 Polarization: -14.59 SS G_CDS: 5.59 Total: -9.01 kcal Atomic # 7 Polarization: -89.16 SS G_CDS: -1.97 Total: -91.13 kcal Atomic # 8 Polarization: -30.98 SS G_CDS: -1.10 Total: -32.08 kcal Atomic # 14 Polarization: 51.77 SS G_CDS: 1.72 Total: 53.49 kcal Total: -71.91 5.14 -66.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226073967.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.527 kcal (2) G-P(sol) polarization free energy of solvation -71.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds