Wall clock time and date at job start Tue Mar 31 2020 13:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53007 * 109.46977 * 2 1 4 4 O 1.45195 * 109.46683 * 180.02562 * 3 2 1 5 5 C 1.34745 * 116.99875 * 180.02562 * 4 3 2 6 6 O 1.21505 * 119.99761 * 359.97438 * 5 4 3 7 7 C 1.47472 * 120.00429 * 179.97438 * 5 4 3 8 8 C 1.39794 * 120.09227 * 179.97438 * 7 5 4 9 9 C 1.37680 * 119.90223 * 180.02562 * 8 7 5 10 10 C 1.39017 * 120.09522 * 0.02562 * 9 8 7 11 11 O 1.35701 * 119.90634 * 179.97438 * 10 9 8 12 12 C 1.42898 * 116.99547 * 185.74536 * 11 10 9 13 13 C 1.53513 * 114.16645 * 156.82039 * 12 11 10 14 14 N 1.47485 * 87.93261 * 87.81285 * 13 12 11 15 15 C 1.46902 * 110.99793 * 138.70308 * 14 13 12 16 16 C 1.50698 * 109.46764 * 170.00245 * 15 14 13 17 17 H 1.08000 * 120.00157 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00091 * 180.02562 * 16 15 14 19 19 N 1.31518 * 119.99751 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00248 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.46660 * 269.99862 * 20 18 16 22 22 H 1.48497 * 109.47059 * 29.99424 * 20 18 16 23 23 H 1.48492 * 109.47424 * 150.00012 * 20 18 16 24 24 C 1.47483 * 87.83512 * 27.00966 * 14 13 12 25 25 C 1.39012 * 120.18608 * 0.27324 * 10 9 8 26 26 C 1.37683 * 120.08969 * 359.44466 * 25 10 9 27 27 H 1.09004 * 109.46842 * 60.00005 * 1 2 3 28 28 H 1.09005 * 109.46947 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47051 * 299.99862 * 1 2 3 30 30 H 1.09006 * 109.46561 * 240.00779 * 2 1 3 31 31 H 1.08993 * 109.47221 * 120.00349 * 2 1 3 32 32 H 1.09000 * 109.46624 * 60.00273 * 3 2 1 33 33 H 1.08997 * 109.47019 * 299.99936 * 3 2 1 34 34 H 1.07995 * 120.04763 * 0.02562 * 8 7 5 35 35 H 1.07998 * 119.95354 * 179.97438 * 9 8 7 36 36 H 1.08993 * 113.26044 * 23.87343 * 12 11 10 37 37 H 1.09000 * 113.47683 * 333.05139 * 13 12 11 38 38 H 1.08998 * 113.47725 * 202.57885 * 13 12 11 39 39 H 1.09003 * 109.47220 * 50.00509 * 15 14 13 40 40 H 1.08999 * 109.46884 * 290.00011 * 15 14 13 41 41 H 0.97004 * 119.99947 * 180.02562 * 19 18 16 42 42 H 1.09004 * 113.47517 * 87.75289 * 24 14 13 43 43 H 1.08996 * 113.47533 * 218.22610 * 24 14 13 44 44 H 1.07991 * 119.95294 * 179.72919 * 25 10 9 45 45 H 1.08008 * 120.04509 * 180.25790 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 3.4920 1.4425 -0.0006 5 6 4.1037 2.6431 -0.0002 6 8 3.4420 3.6621 0.0003 7 6 5.5764 2.7203 -0.0002 8 6 6.2130 3.9649 -0.0002 9 6 7.5882 4.0325 -0.0008 10 6 8.3435 2.8653 -0.0018 11 8 9.6986 2.9364 -0.0028 12 6 10.4126 1.7053 -0.1313 13 6 11.8385 1.8599 -0.6785 14 7 12.2921 2.0628 0.7102 15 6 13.5534 1.3529 0.9611 16 6 14.1109 1.7757 2.2958 17 1 13.5814 2.4997 2.8973 18 6 15.2974 1.2390 2.7486 19 7 15.9425 0.3577 2.0159 20 14 15.9881 1.7625 4.4034 21 1 16.8774 2.9375 4.2191 22 1 14.8719 2.1245 5.3135 23 1 16.7640 0.6421 4.9928 24 6 11.1363 1.2572 1.1463 25 6 7.7144 1.6257 -0.0080 26 6 6.3397 1.5492 -0.0016 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9564 -0.8900 34 1 5.6270 4.8720 0.0001 35 1 8.0809 4.9935 -0.0012 36 1 9.8320 0.9194 -0.6143 37 1 11.9683 2.7385 -1.3104 38 1 12.2297 0.9504 -1.1344 39 1 14.2691 1.5948 0.1753 40 1 13.3704 0.2784 0.9676 41 1 16.7771 -0.0202 2.3346 42 1 11.3400 0.1868 1.1772 43 1 10.6709 1.6250 2.0606 44 1 8.3048 0.7215 -0.0132 45 1 5.8517 0.5856 -0.0022 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228005364.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:34 Heat of formation + Delta-G solvation = -60.576738 kcal Electronic energy + Delta-G solvation = -25275.340208 eV Core-core repulsion = 21452.649110 eV Total energy + Delta-G solvation = -3822.691098 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.91749 -40.39094 -38.88309 -37.12590 -36.49046 -34.26139 -32.92393 -31.42794 -30.64126 -29.28797 -27.18539 -25.73492 -25.41442 -23.99876 -23.21267 -22.03179 -21.69625 -21.08927 -19.61835 -18.37967 -17.92573 -17.03799 -16.93134 -16.41146 -15.89991 -15.63003 -15.14613 -15.03583 -14.79835 -14.55876 -14.39922 -13.89633 -13.66673 -13.52591 -13.22341 -13.11791 -13.07945 -12.69027 -12.47474 -12.37741 -12.03524 -11.82660 -11.61986 -11.58846 -11.51381 -11.01147 -10.91378 -10.81981 -10.71937 -10.54088 -10.42816 -10.18685 -9.74829 -9.32679 -9.31946 -8.47784 -8.40790 -7.94616 -6.08045 -4.09226 0.57525 1.12260 2.35767 2.36686 3.00781 3.30346 3.36088 3.40746 3.57054 4.30291 4.38731 4.43396 4.47818 4.51263 4.58814 4.63828 4.69876 4.79422 4.92508 4.97779 5.07266 5.09983 5.15628 5.20254 5.27435 5.35464 5.48448 5.58686 5.62334 5.67961 5.75787 5.78340 5.88782 5.98032 6.05399 6.07028 6.11379 6.18616 6.22917 6.47286 6.52092 7.06193 7.35602 7.54275 7.57764 7.79309 8.03170 8.39032 8.98511 9.55300 11.02982 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.023355 B = 0.001935 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.583655 B =14465.133018 C =14766.787911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C 0.067 3.933 4 O -0.356 6.356 5 C 0.517 3.483 6 O -0.515 6.515 7 C -0.182 4.182 8 C -0.012 4.012 9 C -0.169 4.169 10 C 0.181 3.819 11 O -0.268 6.268 12 C 0.039 3.961 13 C 0.001 3.999 14 N -0.456 5.456 15 C 0.156 3.844 16 C -0.505 4.505 17 H 0.064 0.936 18 C 0.054 3.946 19 N -0.900 5.900 20 Si 0.900 3.100 21 H -0.280 1.280 22 H -0.273 1.273 23 H -0.287 1.287 24 C -0.005 4.005 25 C -0.228 4.228 26 C -0.016 4.016 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.142 0.858 35 H 0.143 0.857 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.031 0.969 40 H 0.005 0.995 41 H 0.262 0.738 42 H 0.079 0.921 43 H 0.083 0.917 44 H 0.141 0.859 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.984 -1.104 -7.160 27.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.007 4.007 4 O -0.273 6.273 5 C 0.363 3.637 6 O -0.405 6.405 7 C -0.184 4.184 8 C -0.030 4.030 9 C -0.187 4.187 10 C 0.133 3.867 11 O -0.179 6.179 12 C -0.018 4.018 13 C -0.128 4.128 14 N -0.179 5.179 15 C 0.030 3.970 16 C -0.544 4.544 17 H 0.082 0.918 18 C -0.147 4.147 19 N -0.540 5.540 20 Si 0.728 3.272 21 H -0.206 1.206 22 H -0.198 1.198 23 H -0.213 1.213 24 C -0.134 4.134 25 C -0.247 4.247 26 C -0.035 4.035 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.160 0.840 35 H 0.160 0.840 36 H 0.108 0.892 37 H 0.104 0.896 38 H 0.098 0.902 39 H 0.049 0.951 40 H 0.022 0.978 41 H 0.071 0.929 42 H 0.097 0.903 43 H 0.102 0.898 44 H 0.159 0.841 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -26.747 -0.100 -6.861 27.613 hybrid contribution 0.423 -0.833 0.618 1.120 sum -26.324 -0.934 -6.243 27.070 Atomic orbital electron populations 1.21693 0.94122 1.02601 1.02349 1.21528 0.96160 0.94675 1.03873 1.23133 0.76214 0.98635 1.02706 1.86526 1.23394 1.32954 1.84408 1.21086 0.89035 0.81209 0.72374 1.90825 1.66897 1.36033 1.46776 1.18901 0.88776 0.94982 1.15726 1.21009 0.93365 0.96790 0.91865 1.20411 0.92491 0.97589 1.08214 1.19545 0.83527 0.93938 0.89675 1.86186 1.14124 1.32605 1.84966 1.23849 0.92835 0.84998 1.00074 1.24011 0.90599 1.02108 0.96107 1.69116 1.03053 1.42400 1.03373 1.20314 0.86530 0.91991 0.98189 1.21092 1.06242 1.24270 1.02796 0.91794 1.25006 0.96806 0.95087 0.97798 1.69952 1.16776 1.29422 1.37853 0.86459 0.79034 0.78096 0.83625 1.20559 1.19809 1.21279 1.24253 0.93667 0.98043 0.97469 1.21341 0.95431 0.97544 1.10355 1.21206 0.92908 0.97931 0.91425 0.92309 0.91598 0.92280 0.90692 0.90652 0.91156 0.91189 0.84007 0.83964 0.89218 0.89556 0.90217 0.95103 0.97765 0.92881 0.90348 0.89836 0.84110 0.84355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 9.91 37.16 0.37 -0.28 16 2 C -0.12 -0.71 6.31 -26.73 -0.17 -0.88 16 3 C 0.07 0.53 5.48 37.16 0.20 0.74 16 4 O -0.36 -3.64 9.46 -40.61 -0.38 -4.02 16 5 C 0.52 6.15 7.89 34.49 0.27 6.42 16 6 O -0.52 -7.20 16.13 -19.27 -0.31 -7.51 16 7 C -0.18 -2.07 5.87 -104.97 -0.62 -2.68 16 8 C -0.01 -0.13 9.59 -39.20 -0.38 -0.51 16 9 C -0.17 -1.95 9.97 -39.50 -0.39 -2.35 16 10 C 0.18 2.31 6.69 -39.01 -0.26 2.05 16 11 O -0.27 -4.05 10.18 -18.81 -0.19 -4.24 16 12 C 0.04 0.56 4.06 -26.20 -0.11 0.46 16 13 C 0.00 0.02 7.52 -7.54 -0.06 -0.04 16 14 N -0.46 -9.73 6.32 -246.09 -1.55 -11.29 16 15 C 0.16 3.97 4.57 -4.98 -0.02 3.95 16 16 C -0.51 -14.33 9.39 -34.44 -0.32 -14.66 16 17 H 0.06 1.83 7.81 -52.49 -0.41 1.42 16 18 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 19 N -0.90 -26.47 13.29 55.43 0.74 -25.74 16 20 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 24 C 0.00 -0.08 7.56 -7.54 -0.06 -0.14 16 25 C -0.23 -2.51 9.01 -39.50 -0.36 -2.87 16 26 C -0.02 -0.17 9.61 -39.20 -0.38 -0.54 16 27 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.14 1.41 7.64 -52.49 -0.40 1.01 16 35 H 0.14 1.49 8.06 -52.49 -0.42 1.06 16 36 H 0.09 1.01 5.88 -51.93 -0.31 0.71 16 37 H 0.09 1.39 8.14 -51.93 -0.42 0.96 16 38 H 0.08 1.23 7.91 -51.93 -0.41 0.82 16 39 H 0.03 0.84 8.08 -51.93 -0.42 0.42 16 40 H 0.00 0.12 7.30 -51.93 -0.38 -0.26 16 41 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 42 H 0.08 1.33 7.42 -51.93 -0.39 0.95 16 43 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 44 H 0.14 1.35 5.86 -52.49 -0.31 1.05 16 45 H 0.14 1.15 7.60 -52.48 -0.40 0.75 16 LS Contribution 380.25 15.07 5.73 5.73 Total: -1.00 -32.32 380.25 -10.14 -42.46 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -6.78 Total: -2.21 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: -2.37 Total: -9.89 kcal Atomic # 7 Polarization: -36.21 SS G_CDS: -0.82 Total: -37.02 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: -0.89 Total: -15.78 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.32 -10.14 -42.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228005364.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.119 kcal (2) G-P(sol) polarization free energy of solvation -32.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds