Wall clock time and date at job start Tue Mar 31 2020 13:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53007 * 109.46977 * 2 1 4 4 O 1.45195 * 109.46683 * 180.02562 * 3 2 1 5 5 C 1.34745 * 116.99875 * 180.02562 * 4 3 2 6 6 O 1.21505 * 119.99761 * 359.97438 * 5 4 3 7 7 C 1.47472 * 120.00429 * 179.97438 * 5 4 3 8 8 C 1.39794 * 120.09227 * 179.97438 * 7 5 4 9 9 C 1.37680 * 119.90223 * 180.02562 * 8 7 5 10 10 C 1.39017 * 120.09522 * 0.02562 * 9 8 7 11 11 O 1.35701 * 119.90634 * 179.97438 * 10 9 8 12 12 C 1.42898 * 116.99547 * 185.74536 * 11 10 9 13 13 C 1.53513 * 114.16645 * 156.82039 * 12 11 10 14 14 N 1.47485 * 87.93261 * 87.81285 * 13 12 11 15 15 C 1.46902 * 110.99793 * 138.70308 * 14 13 12 16 16 C 1.50698 * 109.46764 * 170.00245 * 15 14 13 17 17 H 1.08000 * 120.00157 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00091 * 180.02562 * 16 15 14 19 19 N 1.31518 * 119.99751 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00248 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.46660 * 269.99862 * 20 18 16 22 22 H 1.48497 * 109.47059 * 29.99424 * 20 18 16 23 23 H 1.48492 * 109.47424 * 150.00012 * 20 18 16 24 24 C 1.47483 * 87.83512 * 27.00966 * 14 13 12 25 25 C 1.39012 * 120.18608 * 0.27324 * 10 9 8 26 26 C 1.37683 * 120.08969 * 359.44466 * 25 10 9 27 27 H 1.09004 * 109.46842 * 60.00005 * 1 2 3 28 28 H 1.09005 * 109.46947 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47051 * 299.99862 * 1 2 3 30 30 H 1.09006 * 109.46561 * 240.00779 * 2 1 3 31 31 H 1.08993 * 109.47221 * 120.00349 * 2 1 3 32 32 H 1.09000 * 109.46624 * 60.00273 * 3 2 1 33 33 H 1.08997 * 109.47019 * 299.99936 * 3 2 1 34 34 H 1.07995 * 120.04763 * 0.02562 * 8 7 5 35 35 H 1.07998 * 119.95354 * 179.97438 * 9 8 7 36 36 H 1.08993 * 113.26044 * 23.87343 * 12 11 10 37 37 H 1.09000 * 113.47683 * 333.05139 * 13 12 11 38 38 H 1.08998 * 113.47725 * 202.57885 * 13 12 11 39 39 H 1.09003 * 109.47220 * 50.00509 * 15 14 13 40 40 H 1.08999 * 109.46884 * 290.00011 * 15 14 13 41 41 H 0.97004 * 119.99947 * 180.02562 * 19 18 16 42 42 H 1.09004 * 113.47517 * 87.75289 * 24 14 13 43 43 H 1.08996 * 113.47533 * 218.22610 * 24 14 13 44 44 H 1.07991 * 119.95294 * 179.72919 * 25 10 9 45 45 H 1.08008 * 120.04509 * 180.25790 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 3.4920 1.4425 -0.0006 5 6 4.1037 2.6431 -0.0002 6 8 3.4420 3.6621 0.0003 7 6 5.5764 2.7203 -0.0002 8 6 6.2130 3.9649 -0.0002 9 6 7.5882 4.0325 -0.0008 10 6 8.3435 2.8653 -0.0018 11 8 9.6986 2.9364 -0.0028 12 6 10.4126 1.7053 -0.1313 13 6 11.8385 1.8599 -0.6785 14 7 12.2921 2.0628 0.7102 15 6 13.5534 1.3529 0.9611 16 6 14.1109 1.7757 2.2958 17 1 13.5814 2.4997 2.8973 18 6 15.2974 1.2390 2.7486 19 7 15.9425 0.3577 2.0159 20 14 15.9881 1.7625 4.4034 21 1 16.8774 2.9375 4.2191 22 1 14.8719 2.1245 5.3135 23 1 16.7640 0.6421 4.9928 24 6 11.1363 1.2572 1.1463 25 6 7.7144 1.6257 -0.0080 26 6 6.3397 1.5492 -0.0016 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9564 -0.8900 34 1 5.6270 4.8720 0.0001 35 1 8.0809 4.9935 -0.0012 36 1 9.8320 0.9194 -0.6143 37 1 11.9683 2.7385 -1.3104 38 1 12.2297 0.9504 -1.1344 39 1 14.2691 1.5948 0.1753 40 1 13.3704 0.2784 0.9676 41 1 16.7771 -0.0202 2.3346 42 1 11.3400 0.1868 1.1772 43 1 10.6709 1.6250 2.0606 44 1 8.3048 0.7215 -0.0132 45 1 5.8517 0.5856 -0.0022 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228005364.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:34 Heat of formation + Delta-G solvation = -80.394125 kcal Electronic energy + Delta-G solvation = -25276.199554 eV Core-core repulsion = 21452.649110 eV Total energy + Delta-G solvation = -3823.550444 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.92545 -41.44610 -40.01874 -38.09481 -37.49360 -35.02425 -34.77940 -32.33496 -31.66793 -30.91800 -27.83805 -27.36459 -26.85621 -24.96813 -24.34727 -23.25629 -22.48774 -22.13095 -20.77098 -19.35863 -18.88114 -18.52582 -17.94527 -17.68318 -17.17451 -16.87354 -16.44613 -15.97788 -15.79882 -15.72736 -15.52352 -15.09219 -14.97551 -14.52609 -14.42856 -13.93596 -13.88583 -13.77755 -13.58815 -13.37518 -13.17910 -13.05425 -13.02774 -12.76417 -12.39440 -12.29485 -12.13861 -12.09276 -11.91830 -11.62858 -11.54245 -11.46231 -11.44413 -11.26048 -10.62412 -10.16367 -9.60179 -9.37636 -8.24206 -6.33803 -0.33556 0.28049 1.39168 1.40267 1.44435 1.51713 1.58105 1.94489 2.38436 2.68601 3.08046 3.27808 3.32002 3.57502 3.69626 3.73992 3.92129 3.93745 3.94463 4.07921 4.27069 4.28291 4.40778 4.42709 4.45859 4.52490 4.55367 4.61888 4.65951 4.75201 4.81241 4.93592 4.96044 5.02031 5.06304 5.12237 5.17553 5.19244 5.23246 5.31986 5.44741 5.55988 5.58713 5.77987 6.06695 6.33802 6.45230 6.65998 6.80130 7.35738 8.86458 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.023355 B = 0.001935 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.583655 B =14465.133018 C =14766.787911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.119 4.119 3 C 0.060 3.940 4 O -0.354 6.354 5 C 0.518 3.482 6 O -0.542 6.542 7 C -0.189 4.189 8 C -0.013 4.013 9 C -0.172 4.172 10 C 0.161 3.839 11 O -0.290 6.290 12 C 0.067 3.933 13 C -0.001 4.001 14 N -0.489 5.489 15 C 0.171 3.829 16 C -0.529 4.529 17 H 0.053 0.947 18 C 0.005 3.995 19 N -0.931 5.931 20 Si 0.967 3.033 21 H -0.274 1.274 22 H -0.268 1.268 23 H -0.278 1.278 24 C -0.009 4.009 25 C -0.224 4.224 26 C -0.009 4.009 27 H 0.060 0.940 28 H 0.076 0.924 29 H 0.059 0.941 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.149 0.851 35 H 0.148 0.852 36 H 0.132 0.868 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.004 0.996 40 H -0.009 1.009 41 H 0.266 0.734 42 H 0.085 0.915 43 H 0.074 0.926 44 H 0.159 0.841 45 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.502 -1.938 -7.036 29.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.013 4.013 4 O -0.271 6.271 5 C 0.366 3.634 6 O -0.434 6.434 7 C -0.191 4.191 8 C -0.031 4.031 9 C -0.190 4.190 10 C 0.114 3.886 11 O -0.202 6.202 12 C 0.010 3.990 13 C -0.130 4.130 14 N -0.212 5.212 15 C 0.044 3.956 16 C -0.567 4.567 17 H 0.072 0.928 18 C -0.194 4.194 19 N -0.571 5.571 20 Si 0.792 3.208 21 H -0.199 1.199 22 H -0.193 1.193 23 H -0.203 1.203 24 C -0.138 4.138 25 C -0.242 4.242 26 C -0.027 4.027 27 H 0.079 0.921 28 H 0.095 0.905 29 H 0.078 0.922 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.166 0.834 35 H 0.166 0.834 36 H 0.150 0.850 37 H 0.107 0.893 38 H 0.111 0.889 39 H 0.022 0.978 40 H 0.008 0.992 41 H 0.074 0.926 42 H 0.103 0.897 43 H 0.093 0.907 44 H 0.176 0.824 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -28.291 -0.940 -6.745 29.099 hybrid contribution 0.770 -0.559 0.543 1.095 sum -27.521 -1.499 -6.202 28.251 Atomic orbital electron populations 1.21702 0.93031 1.03365 1.02537 1.21535 0.96972 0.92982 1.04164 1.23390 0.74964 1.00316 1.02644 1.86520 1.24696 1.31975 1.83887 1.21200 0.89240 0.81292 0.71706 1.90811 1.67483 1.36945 1.48152 1.19059 0.88733 0.95570 1.15725 1.21103 0.93188 0.97242 0.91617 1.20526 0.92661 0.97809 1.08023 1.19754 0.82650 0.95080 0.91117 1.86152 1.15488 1.32887 1.85641 1.23604 0.92278 0.85780 0.97319 1.24088 0.92145 1.02918 0.93886 1.69011 1.02253 1.42925 1.06991 1.19973 0.88170 0.91332 0.96092 1.21418 1.06849 1.24319 1.04111 0.92846 1.25865 0.97027 0.94958 1.01532 1.70053 1.17195 1.30254 1.39580 0.85417 0.78355 0.77977 0.79084 1.19943 1.19281 1.20288 1.24296 0.92703 0.97953 0.98885 1.21508 0.95803 0.97404 1.09511 1.21414 0.92578 0.98484 0.90219 0.92088 0.90532 0.92192 0.90290 0.90444 0.91363 0.91205 0.83358 0.83430 0.85033 0.89283 0.88894 0.97827 0.99172 0.92552 0.89722 0.90711 0.82376 0.82117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.91 71.98 0.71 -0.31 16 2 C -0.12 -1.14 6.31 30.60 0.19 -0.94 16 3 C 0.06 0.88 5.48 71.98 0.39 1.28 16 4 O -0.35 -6.68 9.46 -56.56 -0.54 -7.21 16 5 C 0.52 11.72 7.89 70.26 0.55 12.27 16 6 O -0.54 -14.83 16.13 19.82 0.32 -14.51 16 7 C -0.19 -3.99 5.87 -20.09 -0.12 -4.10 16 8 C -0.01 -0.28 9.59 22.51 0.22 -0.06 16 9 C -0.17 -3.80 9.97 22.32 0.22 -3.58 16 10 C 0.16 3.84 6.69 22.64 0.15 3.99 16 11 O -0.29 -8.37 10.18 -90.21 -0.92 -9.28 16 12 C 0.07 1.79 4.06 30.94 0.13 1.92 16 13 C 0.00 -0.05 7.52 83.58 0.63 0.58 16 14 N -0.49 -21.04 6.32 -932.86 -5.89 -26.93 16 15 C 0.17 8.96 4.57 85.56 0.39 9.35 16 16 C -0.53 -30.58 9.39 25.60 0.24 -30.34 16 17 H 0.05 3.12 7.81 -2.91 -0.02 3.10 16 18 C 0.00 0.26 5.46 84.65 0.46 0.72 16 19 N -0.93 -55.31 13.29 21.45 0.28 -55.03 16 20 Si 0.97 44.67 29.54 68.60 2.03 46.70 16 21 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 22 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 23 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 24 C -0.01 -0.31 7.56 83.58 0.63 0.32 16 25 C -0.22 -4.32 9.01 22.32 0.20 -4.12 16 26 C -0.01 -0.16 9.61 22.51 0.22 0.06 16 27 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 28 H 0.08 0.38 8.14 -2.38 -0.02 0.36 16 29 H 0.06 0.40 8.14 -2.39 -0.02 0.39 16 30 H 0.08 0.70 8.14 -2.38 -0.02 0.68 16 31 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.15 2.86 7.64 -2.91 -0.02 2.84 16 35 H 0.15 3.00 8.06 -2.91 -0.02 2.98 16 36 H 0.13 2.48 5.88 -2.39 -0.01 2.46 16 37 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 38 H 0.09 2.78 7.91 -2.39 -0.02 2.76 16 39 H 0.00 0.20 8.08 -2.39 -0.02 0.19 16 40 H -0.01 -0.51 7.30 -2.39 -0.02 -0.53 16 41 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 42 H 0.08 2.81 7.42 -2.38 -0.02 2.79 16 43 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 44 H 0.16 2.44 5.86 -2.91 -0.02 2.42 16 45 H 0.16 2.12 7.60 -2.91 -0.02 2.10 16 Total: -1.00 -70.22 380.25 1.49 -68.73 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: 0.98 Total: 10.49 kcal Atomic # 6 Polarization: -18.18 SS G_CDS: 5.22 Total: -12.95 kcal Atomic # 7 Polarization: -76.36 SS G_CDS: -5.61 Total: -81.96 kcal Atomic # 8 Polarization: -29.87 SS G_CDS: -1.13 Total: -31.00 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -70.22 1.49 -68.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228005364.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.663 kcal (2) G-P(sol) polarization free energy of solvation -70.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds