Wall clock time and date at job start Tue Mar 31 2020 13:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.47160 * 2 1 4 4 O 1.21292 * 120.00332 * 359.97438 * 3 2 1 5 5 C 1.46858 * 119.99770 * 179.97438 * 3 2 1 6 6 C 1.40018 * 120.10010 * 359.97438 * 5 3 2 7 7 C 1.37674 * 119.97994 * 180.02562 * 6 5 3 8 8 C 1.38915 * 120.17266 * 0.02562 * 7 6 5 9 9 O 1.35755 * 119.90211 * 179.97438 * 8 7 6 10 10 C 1.42903 * 116.99798 * 354.44051 * 9 8 7 11 11 H 1.09006 * 110.63667 * 326.91079 * 10 9 8 12 12 C 1.55158 * 110.72081 * 203.77455 * 10 9 8 13 13 C 1.54909 * 101.58137 * 206.13049 * 12 10 9 14 14 N 1.47428 * 104.83113 * 37.01064 * 13 12 10 15 15 C 1.36932 * 125.64849 * 155.83861 * 14 13 12 16 16 H 1.08001 * 119.99861 * 180.02562 * 15 14 13 17 17 C 1.38816 * 120.00032 * 0.02562 * 15 14 13 18 18 N 1.31620 * 120.00028 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00188 * 180.02562 * 17 15 14 20 20 H 1.48510 * 109.46926 * 59.99579 * 19 17 15 21 21 H 1.48491 * 109.47315 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47147 * 300.00242 * 19 17 15 23 23 C 1.47319 * 108.73530 * 335.71332 * 14 13 12 24 24 C 1.39481 * 120.20200 * 0.02647 * 8 7 6 25 25 O 1.36000 * 119.99241 * 180.02562 * 24 8 7 26 26 C 1.42905 * 116.99865 * 179.97438 * 25 24 8 27 27 C 1.38040 * 120.01655 * 359.66677 * 24 8 7 28 28 H 1.09001 * 109.47300 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47573 * 300.00960 * 1 2 3 30 30 H 1.09007 * 109.47145 * 60.00047 * 1 2 3 31 31 H 1.08991 * 109.47087 * 239.99429 * 2 1 3 32 32 H 1.09005 * 109.46626 * 119.99987 * 2 1 3 33 33 H 1.08000 * 120.00779 * 0.03115 * 6 5 3 34 34 H 1.07992 * 119.91274 * 179.97438 * 7 6 5 35 35 H 1.08998 * 111.00032 * 324.20613 * 12 10 9 36 36 H 1.08999 * 111.00557 * 88.05402 * 12 10 9 37 37 H 1.08999 * 110.36335 * 155.84369 * 13 12 10 38 38 H 1.08994 * 110.36920 * 278.05826 * 13 12 10 39 39 H 0.96991 * 119.99937 * 180.02562 * 18 17 15 40 40 H 1.09004 * 110.06609 * 241.87726 * 23 14 13 41 41 H 1.08994 * 109.85308 * 120.61540 * 23 14 13 42 42 H 1.08997 * 109.47453 * 299.99742 * 26 25 24 43 43 H 1.09003 * 109.47013 * 60.00007 * 26 25 24 44 44 H 1.08998 * 109.46984 * 179.97438 * 26 25 24 45 45 H 1.08005 * 120.08650 * 180.30631 * 27 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3428 -0.0005 5 6 3.4762 1.6891 0.0006 6 6 4.3879 0.6264 0.0017 7 6 5.7409 0.8807 0.0027 8 6 6.2052 2.1900 0.0033 9 8 7.5406 2.4345 0.0048 10 6 8.4068 1.3047 0.1292 11 1 7.9497 0.5371 0.7537 12 6 9.7846 1.7299 0.7021 13 6 10.7117 0.6270 0.1331 14 7 10.1876 0.3531 -1.2174 15 6 10.9031 -0.1731 -2.2596 16 1 10.4257 -0.3362 -3.2145 17 6 12.2422 -0.4969 -2.0887 18 7 12.8241 -0.2976 -0.9251 19 14 13.2185 -1.2141 -3.5106 20 1 13.2234 -0.2526 -4.6425 21 1 14.6142 -1.4703 -3.0734 22 1 12.5940 -2.4888 -3.9468 23 6 8.7658 0.7363 -1.2599 24 6 5.3036 3.2542 0.0033 25 8 5.7629 4.5343 0.0033 26 6 4.7834 5.5750 0.0027 27 6 3.9453 3.0085 -0.0042 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5140 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5139 0.8901 33 1 4.0297 -0.3925 0.0016 34 1 6.4431 0.0603 0.0040 35 1 10.0748 2.7133 0.3324 36 1 9.7775 1.7104 1.7919 37 1 11.7388 0.9873 0.0755 38 1 10.6589 -0.2692 0.7513 39 1 13.7598 -0.5235 -0.8059 40 1 8.1493 -0.1369 -1.4736 41 1 8.6104 1.4983 -2.0236 42 1 4.1606 5.4873 -0.8875 43 1 4.1599 5.4875 0.8925 44 1 5.2827 6.5438 0.0033 45 1 3.2461 3.8317 -0.0092 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228876457.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:24 Heat of formation + Delta-G solvation = -56.183511 kcal Electronic energy + Delta-G solvation = -26586.396534 eV Core-core repulsion = 22763.895941 eV Total energy + Delta-G solvation = -3822.500593 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.83280 -39.55394 -38.79777 -37.02136 -36.04126 -33.18010 -32.39019 -30.62232 -30.38423 -29.23829 -27.72263 -27.33947 -25.35076 -24.48147 -22.97854 -22.42939 -20.34392 -20.22586 -19.84434 -18.54311 -17.35093 -17.09214 -16.50927 -16.04429 -15.99970 -15.60842 -15.28181 -14.99550 -14.79402 -14.67120 -14.27266 -13.81565 -13.55153 -13.42352 -12.94898 -12.75559 -12.56284 -12.48303 -12.25884 -12.07530 -11.93135 -11.73651 -11.51137 -11.45168 -11.27048 -11.18376 -11.03685 -10.80771 -10.48902 -10.31354 -10.12938 -9.88956 -9.86239 -9.65487 -8.89709 -8.71712 -7.88809 -6.93288 -5.72048 -3.14575 0.55461 1.20595 2.28068 3.15156 3.26293 3.38022 3.42318 3.43767 3.62027 3.80121 4.43735 4.60788 4.69694 4.78723 4.82745 4.88220 4.93007 5.04855 5.09297 5.12419 5.23035 5.24198 5.35024 5.39516 5.43533 5.49128 5.53439 5.56021 5.63344 5.69346 5.88911 5.93515 6.04674 6.13476 6.20733 6.33849 6.42693 6.46824 6.52434 6.59727 7.11692 7.36686 7.38537 7.54345 7.62545 7.77013 8.27167 9.14218 9.74264 10.37232 11.32281 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.017194 B = 0.002828 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.106804 B = 9899.430815 C =10906.505251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.171 4.171 3 C 0.402 3.598 4 O -0.464 6.464 5 C -0.189 4.189 6 C -0.059 4.059 7 C -0.193 4.193 8 C 0.154 3.846 9 O -0.286 6.286 10 C 0.064 3.936 11 H 0.080 0.920 12 C -0.135 4.135 13 C 0.153 3.847 14 N -0.601 5.601 15 C -0.225 4.225 16 H 0.078 0.922 17 C -0.010 4.010 18 N -0.923 5.923 19 Si 0.917 3.083 20 H -0.284 1.284 21 H -0.289 1.289 22 H -0.285 1.285 23 C 0.119 3.881 24 C 0.078 3.922 25 O -0.302 6.302 26 C 0.026 3.974 27 C -0.116 4.116 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.135 0.865 34 H 0.148 0.852 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.114 0.886 38 H 0.017 0.983 39 H 0.254 0.746 40 H 0.028 0.972 41 H 0.037 0.963 42 H 0.054 0.946 43 H 0.053 0.947 44 H 0.101 0.899 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.199 3.792 4.979 21.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.208 4.208 3 C 0.281 3.719 4 O -0.340 6.340 5 C -0.191 4.191 6 C -0.077 4.077 7 C -0.211 4.211 8 C 0.106 3.894 9 O -0.197 6.197 10 C 0.008 3.992 11 H 0.098 0.902 12 C -0.174 4.174 13 C 0.028 3.972 14 N -0.328 5.328 15 C -0.353 4.353 16 H 0.096 0.904 17 C -0.205 4.205 18 N -0.572 5.572 19 Si 0.748 3.252 20 H -0.211 1.211 21 H -0.215 1.215 22 H -0.211 1.211 23 C -0.008 4.008 24 C 0.032 3.968 25 O -0.216 6.216 26 C -0.069 4.069 27 C -0.135 4.135 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.118 0.882 32 H 0.118 0.882 33 H 0.153 0.847 34 H 0.165 0.835 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.132 0.868 38 H 0.035 0.965 39 H 0.065 0.935 40 H 0.045 0.955 41 H 0.055 0.945 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.119 0.881 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -20.072 4.455 4.916 21.140 hybrid contribution 0.296 -0.640 -0.720 1.008 sum -19.775 3.815 4.196 20.573 Atomic orbital electron populations 1.21590 0.93738 1.01754 1.02994 1.21992 0.98229 0.95825 1.04801 1.22347 0.87659 0.91146 0.70723 1.90497 1.58463 1.47841 1.37215 1.20066 0.94828 0.93358 1.10804 1.21126 0.91917 0.98629 0.96052 1.21229 0.96982 0.95212 1.07722 1.18734 0.84046 0.91325 0.95264 1.86256 1.11995 1.35739 1.85759 1.23826 0.90168 0.86659 0.98511 0.90246 1.23216 0.92427 1.02326 0.99415 1.21999 0.98862 0.92404 0.83916 1.44429 1.04082 1.74559 1.09728 1.19036 0.91946 1.33936 0.90375 0.90393 1.24799 0.96765 1.01608 0.97336 1.69739 1.11720 1.53690 1.22022 0.86111 0.79115 0.78880 0.81141 1.21069 1.21489 1.21139 1.21752 0.88315 0.96904 0.93799 1.18129 0.90587 0.83928 1.04139 1.86230 1.34610 1.11570 1.89194 1.23075 0.92820 0.89882 1.01169 1.21204 0.93101 0.97686 1.01489 0.92050 0.92206 0.92171 0.88181 0.88240 0.84672 0.83480 0.90642 0.91421 0.86808 0.96503 0.93502 0.95462 0.94510 0.92746 0.92796 0.88094 0.83995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 9.20 37.16 0.34 -0.72 16 2 C -0.17 -1.25 5.02 -27.88 -0.14 -1.39 16 3 C 0.40 4.34 7.11 -30.82 -0.22 4.12 16 4 O -0.46 -6.23 15.97 5.55 0.09 -6.14 16 5 C -0.19 -2.20 5.87 -105.07 -0.62 -2.82 16 6 C -0.06 -0.63 9.46 -39.12 -0.37 -1.00 16 7 C -0.19 -2.50 8.86 -39.54 -0.35 -2.85 16 8 C 0.15 2.38 6.69 -38.87 -0.26 2.12 16 9 O -0.29 -5.07 9.63 -33.65 -0.32 -5.40 16 10 C 0.06 1.15 2.74 -24.90 -0.07 1.08 16 11 H 0.08 1.26 6.25 -51.93 -0.32 0.93 16 12 C -0.14 -2.58 6.81 -24.58 -0.17 -2.75 16 13 C 0.15 3.62 5.89 -2.53 -0.01 3.60 16 14 N -0.60 -15.23 3.40 -169.84 -0.58 -15.81 16 15 C -0.22 -6.20 10.28 -15.06 -0.15 -6.36 16 16 H 0.08 2.08 7.83 -52.49 -0.41 1.66 16 17 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 18 N -0.92 -26.39 10.09 55.49 0.56 -25.83 16 19 Si 0.92 21.77 29.55 -169.99 -5.02 16.74 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 C 0.12 2.48 6.81 -2.90 -0.02 2.46 16 24 C 0.08 1.12 6.69 -39.19 -0.26 0.86 16 25 O -0.30 -4.37 10.28 -34.42 -0.35 -4.72 16 26 C 0.03 0.25 9.81 101.05 0.99 1.24 16 27 C -0.12 -1.47 8.58 -38.98 -0.33 -1.80 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 30 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 31 H 0.10 0.59 8.08 -51.93 -0.42 0.17 16 32 H 0.10 0.56 8.08 -51.93 -0.42 0.14 16 33 H 0.14 1.00 7.03 -52.49 -0.37 0.63 16 34 H 0.15 1.84 5.56 -52.49 -0.29 1.55 16 35 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16 36 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 37 H 0.11 3.03 5.87 -51.93 -0.30 2.73 16 38 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 40 H 0.03 0.54 7.77 -51.93 -0.40 0.14 16 41 H 0.04 0.81 8.06 -51.93 -0.42 0.39 16 42 H 0.05 0.47 7.64 -51.93 -0.40 0.07 16 43 H 0.05 0.45 7.67 -51.93 -0.40 0.05 16 44 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.14 1.64 5.87 -52.48 -0.31 1.33 16 LS Contribution 366.46 15.07 5.52 5.52 Total: -1.00 -32.13 366.46 -8.40 -40.54 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -6.56 Total: -0.34 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: -1.74 Total: -4.56 kcal Atomic # 7 Polarization: -41.63 SS G_CDS: -0.02 Total: -41.64 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: -0.59 Total: -16.26 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.13 -8.40 -40.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228876457.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.647 kcal (2) G-P(sol) polarization free energy of solvation -32.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds