Wall clock time and date at job start Tue Mar 31 2020 13:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.47160 * 2 1 4 4 O 1.21292 * 120.00332 * 359.97438 * 3 2 1 5 5 C 1.46858 * 119.99770 * 179.97438 * 3 2 1 6 6 C 1.40018 * 120.10010 * 359.97438 * 5 3 2 7 7 C 1.37674 * 119.97994 * 180.02562 * 6 5 3 8 8 C 1.38915 * 120.17266 * 0.02562 * 7 6 5 9 9 O 1.35755 * 119.90211 * 179.97438 * 8 7 6 10 10 C 1.42903 * 116.99798 * 354.44051 * 9 8 7 11 11 H 1.09006 * 110.63667 * 326.91079 * 10 9 8 12 12 C 1.55158 * 110.72081 * 203.77455 * 10 9 8 13 13 C 1.54909 * 101.58137 * 206.13049 * 12 10 9 14 14 N 1.47428 * 104.83113 * 37.01064 * 13 12 10 15 15 C 1.36932 * 125.64849 * 155.83861 * 14 13 12 16 16 H 1.08001 * 119.99861 * 180.02562 * 15 14 13 17 17 C 1.38816 * 120.00032 * 0.02562 * 15 14 13 18 18 N 1.31620 * 120.00028 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00188 * 180.02562 * 17 15 14 20 20 H 1.48510 * 109.46926 * 59.99579 * 19 17 15 21 21 H 1.48491 * 109.47315 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47147 * 300.00242 * 19 17 15 23 23 C 1.47319 * 108.73530 * 335.71332 * 14 13 12 24 24 C 1.39481 * 120.20200 * 0.02647 * 8 7 6 25 25 O 1.36000 * 119.99241 * 180.02562 * 24 8 7 26 26 C 1.42905 * 116.99865 * 179.97438 * 25 24 8 27 27 C 1.38040 * 120.01655 * 359.66677 * 24 8 7 28 28 H 1.09001 * 109.47300 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47573 * 300.00960 * 1 2 3 30 30 H 1.09007 * 109.47145 * 60.00047 * 1 2 3 31 31 H 1.08991 * 109.47087 * 239.99429 * 2 1 3 32 32 H 1.09005 * 109.46626 * 119.99987 * 2 1 3 33 33 H 1.08000 * 120.00779 * 0.03115 * 6 5 3 34 34 H 1.07992 * 119.91274 * 179.97438 * 7 6 5 35 35 H 1.08998 * 111.00032 * 324.20613 * 12 10 9 36 36 H 1.08999 * 111.00557 * 88.05402 * 12 10 9 37 37 H 1.08999 * 110.36335 * 155.84369 * 13 12 10 38 38 H 1.08994 * 110.36920 * 278.05826 * 13 12 10 39 39 H 0.96991 * 119.99937 * 180.02562 * 18 17 15 40 40 H 1.09004 * 110.06609 * 241.87726 * 23 14 13 41 41 H 1.08994 * 109.85308 * 120.61540 * 23 14 13 42 42 H 1.08997 * 109.47453 * 299.99742 * 26 25 24 43 43 H 1.09003 * 109.47013 * 60.00007 * 26 25 24 44 44 H 1.08998 * 109.46984 * 179.97438 * 26 25 24 45 45 H 1.08005 * 120.08650 * 180.30631 * 27 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3428 -0.0005 5 6 3.4762 1.6891 0.0006 6 6 4.3879 0.6264 0.0017 7 6 5.7409 0.8807 0.0027 8 6 6.2052 2.1900 0.0033 9 8 7.5406 2.4345 0.0048 10 6 8.4068 1.3047 0.1292 11 1 7.9497 0.5371 0.7537 12 6 9.7846 1.7299 0.7021 13 6 10.7117 0.6270 0.1331 14 7 10.1876 0.3531 -1.2174 15 6 10.9031 -0.1731 -2.2596 16 1 10.4257 -0.3362 -3.2145 17 6 12.2422 -0.4969 -2.0887 18 7 12.8241 -0.2976 -0.9251 19 14 13.2185 -1.2141 -3.5106 20 1 13.2234 -0.2526 -4.6425 21 1 14.6142 -1.4703 -3.0734 22 1 12.5940 -2.4888 -3.9468 23 6 8.7658 0.7363 -1.2599 24 6 5.3036 3.2542 0.0033 25 8 5.7629 4.5343 0.0033 26 6 4.7834 5.5750 0.0027 27 6 3.9453 3.0085 -0.0042 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5140 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5139 0.8901 33 1 4.0297 -0.3925 0.0016 34 1 6.4431 0.0603 0.0040 35 1 10.0748 2.7133 0.3324 36 1 9.7775 1.7104 1.7919 37 1 11.7388 0.9873 0.0755 38 1 10.6589 -0.2692 0.7513 39 1 13.7598 -0.5235 -0.8059 40 1 8.1493 -0.1369 -1.4736 41 1 8.6104 1.4983 -2.0236 42 1 4.1606 5.4873 -0.8875 43 1 4.1599 5.4875 0.8925 44 1 5.2827 6.5438 0.0033 45 1 3.2461 3.8317 -0.0092 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228876457.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:24 Heat of formation + Delta-G solvation = -74.551893 kcal Electronic energy + Delta-G solvation = -26587.193047 eV Core-core repulsion = 22763.895941 eV Total energy + Delta-G solvation = -3823.297106 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.86933 -40.57190 -39.93742 -38.32922 -37.37977 -34.32609 -33.80943 -31.71839 -31.45500 -30.89125 -29.13192 -28.38526 -26.69031 -25.86545 -23.86698 -23.54003 -22.16368 -21.53146 -20.76671 -19.65488 -19.01169 -18.32479 -17.62840 -17.04832 -16.89043 -16.82070 -16.48125 -16.31854 -15.96510 -15.82674 -15.54548 -15.21270 -14.96107 -14.32471 -14.19719 -13.99514 -13.75392 -13.66684 -13.43290 -13.14576 -13.13249 -12.91770 -12.76876 -12.64637 -12.47845 -12.37193 -12.08990 -12.07476 -12.06685 -11.97862 -11.80606 -11.62879 -11.39499 -10.76053 -10.72494 -9.88268 -8.97849 -8.91898 -7.79708 -5.24986 -0.40021 0.25351 1.38331 1.47935 1.50991 1.57377 2.02470 2.26788 2.49752 2.66954 3.01385 3.31312 3.57221 3.61678 3.74227 3.89837 3.92451 3.99140 4.01701 4.10780 4.19752 4.25723 4.32001 4.32626 4.40157 4.55476 4.58255 4.66376 4.70549 4.76658 4.86950 4.92260 4.96028 5.03515 5.06507 5.09664 5.18791 5.20484 5.35954 5.43617 5.53648 5.56629 5.74990 6.05678 6.27202 6.50755 6.55884 7.07533 7.72686 8.35461 9.22381 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.017194 B = 0.002828 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.106804 B = 9899.430815 C =10906.505251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.167 4.167 3 C 0.403 3.597 4 O -0.496 6.496 5 C -0.189 4.189 6 C -0.044 4.044 7 C -0.192 4.192 8 C 0.120 3.880 9 O -0.305 6.305 10 C 0.082 3.918 11 H 0.106 0.894 12 C -0.124 4.124 13 C 0.156 3.844 14 N -0.623 5.623 15 C -0.243 4.243 16 H 0.080 0.920 17 C -0.063 4.063 18 N -0.948 5.948 19 Si 0.982 3.018 20 H -0.280 1.280 21 H -0.292 1.292 22 H -0.275 1.275 23 C 0.118 3.882 24 C 0.065 3.935 25 O -0.331 6.331 26 C 0.019 3.981 27 C -0.121 4.121 28 H 0.082 0.918 29 H 0.047 0.953 30 H 0.046 0.954 31 H 0.123 0.877 32 H 0.125 0.875 33 H 0.177 0.823 34 H 0.154 0.846 35 H 0.064 0.936 36 H 0.098 0.902 37 H 0.080 0.920 38 H 0.005 0.995 39 H 0.250 0.750 40 H 0.043 0.957 41 H 0.021 0.979 42 H 0.061 0.939 43 H 0.064 0.936 44 H 0.119 0.881 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.241 2.366 5.033 22.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.204 4.204 3 C 0.284 3.716 4 O -0.374 6.374 5 C -0.191 4.191 6 C -0.062 4.062 7 C -0.211 4.211 8 C 0.073 3.927 9 O -0.217 6.217 10 C 0.026 3.974 11 H 0.124 0.876 12 C -0.163 4.163 13 C 0.031 3.969 14 N -0.351 5.351 15 C -0.372 4.372 16 H 0.098 0.902 17 C -0.256 4.256 18 N -0.597 5.597 19 Si 0.810 3.190 20 H -0.206 1.206 21 H -0.218 1.218 22 H -0.201 1.201 23 C -0.008 4.008 24 C 0.020 3.980 25 O -0.246 6.246 26 C -0.075 4.075 27 C -0.139 4.139 28 H 0.101 0.899 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.141 0.859 32 H 0.143 0.857 33 H 0.194 0.806 34 H 0.171 0.829 35 H 0.082 0.918 36 H 0.116 0.884 37 H 0.098 0.902 38 H 0.023 0.977 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.039 0.961 42 H 0.079 0.921 43 H 0.083 0.917 44 H 0.137 0.863 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -22.156 3.039 4.969 22.909 hybrid contribution 0.776 -0.137 -0.745 1.084 sum -21.380 2.902 4.224 21.986 Atomic orbital electron populations 1.21609 0.93979 1.02791 1.01829 1.22086 0.98003 0.93328 1.06996 1.22838 0.86836 0.92562 0.69339 1.90498 1.58960 1.49229 1.38753 1.20397 0.95858 0.93199 1.09622 1.21496 0.90606 1.00277 0.93871 1.21387 0.98185 0.94234 1.07247 1.19075 0.83039 0.92815 0.97764 1.86203 1.13374 1.35382 1.86784 1.23530 0.89951 0.87284 0.96612 0.87624 1.23021 0.92344 0.99879 1.01042 1.21757 0.98293 0.93144 0.83659 1.44712 1.06048 1.74510 1.09795 1.19398 0.92643 1.33883 0.91269 0.90180 1.25635 0.97732 1.02422 0.99798 1.69987 1.11544 1.54516 1.23668 0.85103 0.77308 0.78367 0.78241 1.20582 1.21765 1.20125 1.21864 0.86327 0.97047 0.95567 1.18309 0.91079 0.83981 1.04620 1.86181 1.36706 1.12312 1.89377 1.23330 0.92713 0.89470 1.02004 1.21362 0.92493 0.98765 1.01324 0.89863 0.93341 0.93485 0.85895 0.85661 0.80560 0.82888 0.91770 0.88392 0.90217 0.97664 0.94057 0.93903 0.96079 0.92056 0.91735 0.86315 0.83466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.20 71.98 0.66 -1.08 16 2 C -0.17 -1.78 5.02 29.85 0.15 -1.63 16 3 C 0.40 7.66 7.11 27.94 0.20 7.86 16 4 O -0.50 -12.68 15.97 -3.07 -0.05 -12.73 16 5 C -0.19 -3.93 5.87 -20.16 -0.12 -4.05 16 6 C -0.04 -0.79 9.46 22.57 0.21 -0.58 16 7 C -0.19 -4.52 8.86 22.30 0.20 -4.32 16 8 C 0.12 3.58 6.69 22.73 0.15 3.73 16 9 O -0.30 -10.71 9.63 -76.78 -0.74 -11.45 16 10 C 0.08 2.87 2.74 31.78 0.09 2.96 16 11 H 0.11 3.11 6.25 -2.38 -0.01 3.10 16 12 C -0.12 -4.73 6.81 31.99 0.22 -4.51 16 13 C 0.16 7.55 5.89 86.85 0.51 8.06 16 14 N -0.62 -32.04 3.40 -691.24 -2.35 -34.39 16 15 C -0.24 -13.59 10.28 84.04 0.86 -12.72 16 16 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 17 C -0.06 -3.54 5.49 84.86 0.47 -3.07 16 18 N -0.95 -55.50 10.09 21.65 0.22 -55.28 16 19 Si 0.98 45.06 29.55 68.60 2.03 47.08 16 20 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 21 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 22 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 23 C 0.12 4.89 6.81 86.67 0.59 5.48 16 24 C 0.07 1.86 6.69 22.52 0.15 2.01 16 25 O -0.33 -9.60 10.28 -79.52 -0.82 -10.42 16 26 C 0.02 0.36 9.81 113.37 1.11 1.47 16 27 C -0.12 -2.92 8.58 22.66 0.19 -2.73 16 28 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.05 0.69 8.10 -2.39 -0.02 0.67 16 30 H 0.05 0.68 8.10 -2.38 -0.02 0.66 16 31 H 0.12 0.83 8.08 -2.39 -0.02 0.81 16 32 H 0.13 0.77 8.08 -2.38 -0.02 0.75 16 33 H 0.18 1.63 7.03 -2.91 -0.02 1.61 16 34 H 0.15 3.38 5.56 -2.91 -0.02 3.36 16 35 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 36 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16 37 H 0.08 4.42 5.87 -2.39 -0.01 4.40 16 38 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 39 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 40 H 0.04 1.65 7.77 -2.38 -0.02 1.63 16 41 H 0.02 0.94 8.06 -2.39 -0.02 0.92 16 42 H 0.06 1.04 7.64 -2.39 -0.02 1.02 16 43 H 0.06 1.04 7.67 -2.39 -0.02 1.02 16 44 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 45 H 0.15 3.31 5.87 -2.91 -0.02 3.29 16 Total: -1.00 -71.99 366.46 4.93 -67.06 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: 1.00 Total: 13.24 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: 5.65 Total: -3.11 kcal Atomic # 7 Polarization: -87.54 SS G_CDS: -2.13 Total: -89.67 kcal Atomic # 8 Polarization: -32.99 SS G_CDS: -1.61 Total: -34.60 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.08 kcal Total: -71.99 4.93 -67.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228876457.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.495 kcal (2) G-P(sol) polarization free energy of solvation -71.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds