Wall clock time and date at job start Tue Mar 31 2020 13:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.46815 * 2 1 4 4 O 1.45207 * 109.46996 * 180.02562 * 3 2 1 5 5 C 1.34746 * 117.00036 * 180.02562 * 4 3 2 6 6 O 1.21515 * 120.00270 * 359.97438 * 5 4 3 7 7 C 1.47392 * 120.00057 * 179.97438 * 5 4 3 8 8 C 1.39766 * 120.19992 * 359.97438 * 7 5 4 9 9 C 1.37767 * 119.90608 * 180.02562 * 8 7 5 10 10 C 1.38556 * 120.30727 * 0.02562 * 9 8 7 11 11 C 1.38057 * 120.40638 * 359.97438 * 10 9 8 12 12 C 1.38710 * 120.08276 * 0.29274 * 11 10 9 13 13 O 1.35646 * 120.14792 * 179.70276 * 12 11 10 14 14 C 1.42897 * 117.00028 * 354.44774 * 13 12 11 15 15 H 1.08990 * 110.64601 * 326.95951 * 14 13 12 16 16 C 1.55161 * 110.71714 * 203.81157 * 14 13 12 17 17 C 1.54909 * 101.58008 * 206.13935 * 16 14 13 18 18 N 1.47416 * 104.83427 * 37.01195 * 17 16 14 19 19 C 1.36939 * 125.64741 * 155.90766 * 18 17 16 20 20 H 1.08009 * 119.99970 * 179.97438 * 19 18 17 21 21 C 1.38809 * 120.00116 * 359.97276 * 19 18 17 22 22 N 1.31620 * 120.00019 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00121 * 179.97438 * 21 19 18 24 24 H 1.48509 * 109.46814 * 60.00007 * 23 21 19 25 25 H 1.48496 * 109.47368 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47480 * 300.00578 * 23 21 19 27 27 C 1.47320 * 108.73909 * 335.71659 * 18 17 16 28 28 H 1.09006 * 109.46880 * 299.99578 * 1 2 3 29 29 H 1.08992 * 109.47460 * 59.99978 * 1 2 3 30 30 H 1.09007 * 109.47109 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46668 * 239.99751 * 2 1 3 32 32 H 1.09002 * 109.46946 * 120.00138 * 2 1 3 33 33 H 1.08999 * 109.47706 * 60.00387 * 3 2 1 34 34 H 1.08999 * 109.46974 * 299.99882 * 3 2 1 35 35 H 1.08000 * 120.04448 * 0.02562 * 8 7 5 36 36 H 1.07997 * 119.84525 * 179.97438 * 9 8 7 37 37 H 1.08001 * 119.80071 * 180.02562 * 10 9 8 38 38 H 1.07992 * 119.96117 * 180.02562 * 11 10 9 39 39 H 1.08993 * 111.00676 * 324.21025 * 16 14 13 40 40 H 1.08998 * 110.99790 * 88.06557 * 16 14 13 41 41 H 1.09002 * 110.36572 * 155.85590 * 17 16 14 42 42 H 1.09009 * 110.36370 * 278.06178 * 17 16 14 43 43 H 0.96999 * 120.00103 * 180.02562 * 22 21 19 44 44 H 1.08998 * 110.06570 * 241.87652 * 27 18 17 45 45 H 1.08990 * 109.85133 * 120.60923 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4920 1.4425 -0.0006 5 6 4.1037 2.6431 -0.0002 6 8 3.4419 3.6623 0.0003 7 6 5.5756 2.7203 -0.0002 8 6 6.3410 1.5508 -0.0001 9 6 7.7164 1.6300 0.0004 10 6 8.3456 2.8645 0.0014 11 6 7.6022 4.0278 0.0014 12 6 6.2164 3.9673 0.0065 13 8 5.4847 5.1094 0.0125 14 6 6.2022 6.3389 0.1365 15 1 7.0883 6.2059 0.7569 16 6 5.2887 7.4516 0.7153 17 6 5.9554 8.7287 0.1460 18 7 6.4019 8.3503 -1.2069 19 6 6.6146 9.2143 -2.2479 20 1 6.9433 8.8363 -3.2048 21 6 6.4075 10.5757 -2.0734 22 7 6.0074 11.0363 -0.9072 23 14 6.6983 11.7542 -3.4933 24 1 5.8039 11.3973 -4.6238 25 1 6.4078 13.1421 -3.0520 26 1 8.1135 11.6600 -3.9330 27 6 6.5863 6.8894 -1.2532 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 5.8548 0.5865 -0.0005 36 1 8.3068 0.7257 0.0009 37 1 9.4244 2.9170 0.0014 38 1 8.1001 4.9860 0.0018 39 1 4.2672 7.3480 0.3496 40 1 5.3140 7.4502 1.8050 41 1 5.2324 9.5427 0.0932 42 1 6.8073 9.0184 0.7614 43 1 5.8623 11.9876 -0.7853 44 1 7.6270 6.6505 -1.4717 45 1 5.9369 6.4584 -2.0151 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231340044.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:56 Heat of formation + Delta-G solvation = -71.433841 kcal Electronic energy + Delta-G solvation = -26656.682249 eV Core-core repulsion = 22833.520352 eV Total energy + Delta-G solvation = -3823.161897 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.73404 -39.65951 -37.87090 -36.56100 -36.06088 -34.05291 -32.37534 -31.51728 -30.10291 -29.12942 -27.45705 -26.99268 -24.61431 -24.15735 -22.62584 -21.78318 -21.05240 -20.20968 -20.06784 -18.34435 -17.50005 -17.05777 -16.68104 -16.62506 -15.62235 -15.26757 -15.00373 -14.85334 -14.71679 -14.48281 -13.92520 -13.74388 -13.70840 -12.95070 -12.83520 -12.75001 -12.47019 -12.40377 -12.16328 -11.97955 -11.77843 -11.60944 -11.39175 -11.38136 -11.27001 -11.00560 -10.78795 -10.54998 -10.47065 -10.30410 -10.20492 -10.09162 -9.81810 -9.61664 -9.18439 -8.68292 -8.22189 -6.89406 -5.68479 -3.10931 0.70475 1.34684 2.60162 2.64708 3.31992 3.40308 3.44334 3.46088 3.72912 4.46516 4.48505 4.61740 4.68266 4.72945 4.84094 4.98406 5.03216 5.17099 5.18087 5.26382 5.28936 5.33303 5.34956 5.42252 5.49179 5.58667 5.62433 5.71522 5.75506 5.75618 5.86091 6.07392 6.14816 6.27283 6.32863 6.40482 6.45256 6.48902 6.55529 6.60643 6.73512 7.42964 7.57687 7.60982 7.80776 7.91722 8.30970 9.17707 9.77758 10.41162 11.35848 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.014894 B = 0.002987 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.464331 B = 9371.055327 C =10555.931262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C 0.067 3.933 4 O -0.361 6.361 5 C 0.506 3.494 6 O -0.481 6.481 7 C -0.174 4.174 8 C -0.027 4.027 9 C -0.183 4.183 10 C -0.041 4.041 11 C -0.223 4.223 12 C 0.204 3.796 13 O -0.270 6.270 14 C 0.061 3.939 15 H 0.079 0.921 16 C -0.134 4.134 17 C 0.154 3.846 18 N -0.600 5.600 19 C -0.224 4.224 20 H 0.078 0.922 21 C -0.010 4.010 22 N -0.923 5.923 23 Si 0.918 3.082 24 H -0.284 1.284 25 H -0.289 1.289 26 H -0.285 1.285 27 C 0.120 3.880 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.140 0.860 36 H 0.129 0.871 37 H 0.130 0.870 38 H 0.143 0.857 39 H 0.076 0.924 40 H 0.066 0.934 41 H 0.114 0.886 42 H 0.016 0.984 43 H 0.254 0.746 44 H 0.027 0.973 45 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.123 -23.257 4.943 23.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.007 4.007 4 O -0.279 6.279 5 C 0.350 3.650 6 O -0.368 6.368 7 C -0.176 4.176 8 C -0.045 4.045 9 C -0.201 4.201 10 C -0.059 4.059 11 C -0.242 4.242 12 C 0.155 3.845 13 O -0.180 6.180 14 C 0.005 3.995 15 H 0.097 0.903 16 C -0.172 4.172 17 C 0.029 3.971 18 N -0.328 5.328 19 C -0.352 4.352 20 H 0.096 0.904 21 C -0.206 4.206 22 N -0.572 5.572 23 Si 0.748 3.252 24 H -0.211 1.211 25 H -0.215 1.215 26 H -0.212 1.212 27 C -0.007 4.007 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.157 0.843 36 H 0.147 0.853 37 H 0.148 0.852 38 H 0.160 0.840 39 H 0.095 0.905 40 H 0.085 0.915 41 H 0.132 0.868 42 H 0.034 0.966 43 H 0.065 0.935 44 H 0.045 0.955 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -2.608 -22.658 4.882 23.325 hybrid contribution 0.380 0.722 -0.720 1.088 sum -2.229 -21.936 4.163 22.439 Atomic orbital electron populations 1.21695 0.94227 1.02404 1.02476 1.21505 0.96093 0.94841 1.03582 1.23085 0.76479 0.98316 1.02812 1.86485 1.23148 1.33210 1.85101 1.20862 0.88757 0.81422 0.73942 1.90939 1.66239 1.35477 1.44138 1.18407 0.89466 0.92042 1.17641 1.21246 0.93708 0.96932 0.92600 1.20971 0.94237 0.97954 1.06962 1.21216 1.00166 0.91751 0.92791 1.21424 0.92294 1.00673 1.09795 1.19147 0.90093 0.86326 0.88922 1.86415 1.34979 1.12206 1.84402 1.23860 0.95753 0.81305 0.98548 0.90307 1.23199 0.99885 0.94865 0.99289 1.21994 0.97881 0.93403 0.83837 1.44426 1.79187 0.99568 1.09583 1.19038 1.38526 0.87346 0.90310 0.90420 1.24800 1.01713 0.96716 0.97324 1.69749 1.52604 1.12979 1.21836 0.86108 0.77943 0.80039 0.81138 1.21080 1.21492 1.21161 1.21742 0.97789 0.87369 0.93777 0.92276 0.92235 0.91756 0.90826 0.90860 0.91236 0.91190 0.84254 0.85298 0.85203 0.83970 0.90504 0.91523 0.86838 0.96559 0.93530 0.95510 0.94541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.91 37.16 0.37 -0.57 16 2 C -0.12 -0.93 6.31 -26.73 -0.17 -1.09 16 3 C 0.07 0.72 5.48 37.15 0.20 0.92 16 4 O -0.36 -4.67 9.47 -40.62 -0.38 -5.05 16 5 C 0.51 8.05 7.89 34.46 0.27 8.32 16 6 O -0.48 -9.33 14.95 -26.60 -0.40 -9.73 16 7 C -0.17 -2.56 5.88 -104.86 -0.62 -3.18 16 8 C -0.03 -0.30 9.61 -39.18 -0.38 -0.67 16 9 C -0.18 -1.78 10.02 -39.64 -0.40 -2.18 16 10 C -0.04 -0.44 10.03 -39.53 -0.40 -0.83 16 11 C -0.22 -3.04 8.89 -39.47 -0.35 -3.39 16 12 C 0.20 3.31 6.68 -38.67 -0.26 3.05 16 13 O -0.27 -5.17 7.94 -40.52 -0.32 -5.50 16 14 C 0.06 1.18 2.74 -24.89 -0.07 1.11 16 15 H 0.08 1.34 6.26 -51.93 -0.33 1.01 16 16 C -0.13 -2.74 6.81 -24.58 -0.17 -2.91 16 17 C 0.15 3.79 5.89 -2.53 -0.01 3.78 16 18 N -0.60 -15.80 3.40 -169.83 -0.58 -16.38 16 19 C -0.22 -6.35 10.28 -15.06 -0.15 -6.51 16 20 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 21 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 22 N -0.92 -27.01 10.09 55.49 0.56 -26.45 16 23 Si 0.92 22.23 29.55 -169.99 -5.02 17.21 16 24 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 27 C 0.12 2.63 6.82 -2.90 -0.02 2.61 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.14 1.24 7.61 -52.49 -0.40 0.84 16 36 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 37 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 38 H 0.14 1.92 5.60 -52.49 -0.29 1.63 16 39 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 40 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.11 3.13 5.88 -51.93 -0.31 2.83 16 42 H 0.02 0.42 8.14 -51.92 -0.42 -0.01 16 43 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 44 H 0.03 0.56 7.79 -51.93 -0.40 0.16 16 45 H 0.04 0.85 8.06 -51.93 -0.42 0.43 16 LS Contribution 370.31 15.07 5.58 5.58 Total: -1.00 -32.88 370.31 -9.57 -42.46 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -6.77 Total: -0.22 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: -2.24 Total: -1.92 kcal Atomic # 7 Polarization: -42.81 SS G_CDS: -0.02 Total: -42.83 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -1.10 Total: -20.27 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.88 -9.57 -42.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231340044.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.976 kcal (2) G-P(sol) polarization free energy of solvation -32.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds