Wall clock time and date at job start Tue Mar 31 2020 13:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.46815 * 2 1 4 4 O 1.45207 * 109.46996 * 180.02562 * 3 2 1 5 5 C 1.34746 * 117.00036 * 180.02562 * 4 3 2 6 6 O 1.21515 * 120.00270 * 359.97438 * 5 4 3 7 7 C 1.47392 * 120.00057 * 179.97438 * 5 4 3 8 8 C 1.39766 * 120.19992 * 359.97438 * 7 5 4 9 9 C 1.37767 * 119.90608 * 180.02562 * 8 7 5 10 10 C 1.38556 * 120.30727 * 0.02562 * 9 8 7 11 11 C 1.38057 * 120.40638 * 359.97438 * 10 9 8 12 12 C 1.38710 * 120.08276 * 0.29274 * 11 10 9 13 13 O 1.35646 * 120.14792 * 179.70276 * 12 11 10 14 14 C 1.42897 * 117.00028 * 354.44774 * 13 12 11 15 15 H 1.08990 * 110.64601 * 326.95951 * 14 13 12 16 16 C 1.55161 * 110.71714 * 203.81157 * 14 13 12 17 17 C 1.54909 * 101.58008 * 206.13935 * 16 14 13 18 18 N 1.47416 * 104.83427 * 37.01195 * 17 16 14 19 19 C 1.36939 * 125.64741 * 155.90766 * 18 17 16 20 20 H 1.08009 * 119.99970 * 179.97438 * 19 18 17 21 21 C 1.38809 * 120.00116 * 359.97276 * 19 18 17 22 22 N 1.31620 * 120.00019 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00121 * 179.97438 * 21 19 18 24 24 H 1.48509 * 109.46814 * 60.00007 * 23 21 19 25 25 H 1.48496 * 109.47368 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47480 * 300.00578 * 23 21 19 27 27 C 1.47320 * 108.73909 * 335.71659 * 18 17 16 28 28 H 1.09006 * 109.46880 * 299.99578 * 1 2 3 29 29 H 1.08992 * 109.47460 * 59.99978 * 1 2 3 30 30 H 1.09007 * 109.47109 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46668 * 239.99751 * 2 1 3 32 32 H 1.09002 * 109.46946 * 120.00138 * 2 1 3 33 33 H 1.08999 * 109.47706 * 60.00387 * 3 2 1 34 34 H 1.08999 * 109.46974 * 299.99882 * 3 2 1 35 35 H 1.08000 * 120.04448 * 0.02562 * 8 7 5 36 36 H 1.07997 * 119.84525 * 179.97438 * 9 8 7 37 37 H 1.08001 * 119.80071 * 180.02562 * 10 9 8 38 38 H 1.07992 * 119.96117 * 180.02562 * 11 10 9 39 39 H 1.08993 * 111.00676 * 324.21025 * 16 14 13 40 40 H 1.08998 * 110.99790 * 88.06557 * 16 14 13 41 41 H 1.09002 * 110.36572 * 155.85590 * 17 16 14 42 42 H 1.09009 * 110.36370 * 278.06178 * 17 16 14 43 43 H 0.96999 * 120.00103 * 180.02562 * 22 21 19 44 44 H 1.08998 * 110.06570 * 241.87652 * 27 18 17 45 45 H 1.08990 * 109.85133 * 120.60923 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4920 1.4425 -0.0006 5 6 4.1037 2.6431 -0.0002 6 8 3.4419 3.6623 0.0003 7 6 5.5756 2.7203 -0.0002 8 6 6.3410 1.5508 -0.0001 9 6 7.7164 1.6300 0.0004 10 6 8.3456 2.8645 0.0014 11 6 7.6022 4.0278 0.0014 12 6 6.2164 3.9673 0.0065 13 8 5.4847 5.1094 0.0125 14 6 6.2022 6.3389 0.1365 15 1 7.0883 6.2059 0.7569 16 6 5.2887 7.4516 0.7153 17 6 5.9554 8.7287 0.1460 18 7 6.4019 8.3503 -1.2069 19 6 6.6146 9.2143 -2.2479 20 1 6.9433 8.8363 -3.2048 21 6 6.4075 10.5757 -2.0734 22 7 6.0074 11.0363 -0.9072 23 14 6.6983 11.7542 -3.4933 24 1 5.8039 11.3973 -4.6238 25 1 6.4078 13.1421 -3.0520 26 1 8.1135 11.6600 -3.9330 27 6 6.5863 6.8894 -1.2532 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 5.8548 0.5865 -0.0005 36 1 8.3068 0.7257 0.0009 37 1 9.4244 2.9170 0.0014 38 1 8.1001 4.9860 0.0018 39 1 4.2672 7.3480 0.3496 40 1 5.3140 7.4502 1.8050 41 1 5.2324 9.5427 0.0932 42 1 6.8073 9.0184 0.7614 43 1 5.8623 11.9876 -0.7853 44 1 7.6270 6.6505 -1.4717 45 1 5.9369 6.4584 -2.0151 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231340044.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:55 Heat of formation + Delta-G solvation = -88.982898 kcal Electronic energy + Delta-G solvation = -26657.443233 eV Core-core repulsion = 22833.520352 eV Total energy + Delta-G solvation = -3823.922881 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.89079 -40.89328 -39.18450 -37.77075 -37.56389 -34.78806 -34.35083 -32.52843 -31.49113 -30.71684 -29.16948 -27.83130 -26.57563 -25.13558 -23.83024 -22.51164 -22.37510 -21.87941 -21.54032 -19.51327 -19.05253 -18.63472 -17.80421 -17.68584 -16.97998 -16.67150 -16.61365 -15.90185 -15.84292 -15.51608 -15.47703 -15.21258 -14.70182 -14.37877 -14.23006 -13.84888 -13.71098 -13.57149 -13.41241 -13.15295 -13.05561 -12.96237 -12.81425 -12.65876 -12.48201 -12.14918 -12.12863 -12.09677 -12.07973 -11.85727 -11.70737 -11.50630 -11.46298 -11.33215 -10.79742 -10.14675 -9.31185 -8.98712 -7.82980 -5.29031 -0.30290 0.37857 1.44851 1.48844 1.53704 1.55242 1.58262 2.03334 2.47032 2.75179 3.27721 3.51558 3.57679 3.63407 3.77414 3.87259 3.90014 3.93131 3.96272 4.01821 4.22356 4.26558 4.35343 4.42979 4.50467 4.51661 4.55932 4.66250 4.75606 4.79810 4.87501 4.88529 4.93671 5.08140 5.15461 5.16382 5.23589 5.33218 5.38911 5.43881 5.46077 5.50974 5.69640 5.77043 6.21858 6.35420 6.75644 7.03317 7.68058 8.31625 9.19420 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.014894 B = 0.002987 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.464331 B = 9371.055327 C =10555.931262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.114 4.114 3 C 0.059 3.941 4 O -0.351 6.351 5 C 0.504 3.496 6 O -0.530 6.530 7 C -0.195 4.195 8 C -0.020 4.020 9 C -0.164 4.164 10 C -0.031 4.031 11 C -0.234 4.234 12 C 0.167 3.833 13 O -0.295 6.295 14 C 0.080 3.920 15 H 0.105 0.895 16 C -0.124 4.124 17 C 0.159 3.841 18 N -0.623 5.623 19 C -0.246 4.246 20 H 0.080 0.920 21 C -0.064 4.064 22 N -0.948 5.948 23 Si 0.986 3.014 24 H -0.279 1.279 25 H -0.290 1.290 26 H -0.274 1.274 27 C 0.120 3.880 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.165 0.835 36 H 0.172 0.828 37 H 0.166 0.834 38 H 0.139 0.861 39 H 0.058 0.942 40 H 0.096 0.904 41 H 0.080 0.920 42 H 0.007 0.993 43 H 0.251 0.749 44 H 0.042 0.958 45 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.342 -26.387 4.915 26.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.151 4.151 3 C -0.014 4.014 4 O -0.269 6.269 5 C 0.351 3.649 6 O -0.420 6.420 7 C -0.196 4.196 8 C -0.038 4.038 9 C -0.182 4.182 10 C -0.049 4.049 11 C -0.252 4.252 12 C 0.120 3.880 13 O -0.207 6.207 14 C 0.024 3.976 15 H 0.122 0.878 16 C -0.162 4.162 17 C 0.034 3.966 18 N -0.350 5.350 19 C -0.375 4.375 20 H 0.098 0.902 21 C -0.257 4.257 22 N -0.597 5.597 23 Si 0.813 3.187 24 H -0.205 1.205 25 H -0.216 1.216 26 H -0.200 1.200 27 C -0.005 4.005 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.101 0.899 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.182 0.818 36 H 0.190 0.810 37 H 0.183 0.817 38 H 0.156 0.844 39 H 0.077 0.923 40 H 0.114 0.886 41 H 0.098 0.902 42 H 0.025 0.975 43 H 0.060 0.940 44 H 0.060 0.940 45 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -0.817 -25.856 4.854 26.321 hybrid contribution -0.148 1.499 -0.714 1.667 sum -0.965 -24.358 4.140 24.726 Atomic orbital electron populations 1.21714 0.93157 1.03502 1.02339 1.21512 0.96840 0.92335 1.04409 1.23362 0.75336 1.00664 1.02074 1.86483 1.24320 1.31649 1.84406 1.21276 0.89502 0.81439 0.72691 1.90911 1.67354 1.37080 1.46664 1.18643 0.89033 0.92914 1.19060 1.21598 0.94453 0.96511 0.91203 1.21486 0.93730 0.99201 1.03801 1.21673 1.01820 0.90905 0.90464 1.21515 0.91271 1.01941 1.10502 1.19524 0.91289 0.85652 0.91578 1.86367 1.35841 1.12797 1.85686 1.23536 0.95950 0.81498 0.96659 0.87785 1.22996 0.98682 0.93682 1.00859 1.21739 0.96764 0.94459 0.83639 1.44716 1.79379 1.01242 1.09693 1.19411 1.38652 0.88244 0.91164 0.90191 1.25688 1.01732 0.98281 0.99954 1.69998 1.53278 1.12887 1.23579 0.85055 0.78204 0.77420 0.78035 1.20547 1.21570 1.19990 1.21823 0.98125 0.85178 0.95399 0.92353 0.92538 0.89978 0.90081 0.89863 0.91872 0.92233 0.81771 0.81036 0.81698 0.84352 0.92345 0.88594 0.90183 0.97542 0.93981 0.93968 0.96451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.91 71.98 0.71 -0.94 16 2 C -0.11 -1.55 6.31 30.59 0.19 -1.35 16 3 C 0.06 1.28 5.48 71.98 0.39 1.67 16 4 O -0.35 -8.93 9.47 -56.57 -0.54 -9.46 16 5 C 0.50 16.35 7.89 70.23 0.55 16.90 16 6 O -0.53 -21.66 14.95 26.79 0.40 -21.26 16 7 C -0.19 -5.60 5.88 -20.02 -0.12 -5.71 16 8 C -0.02 -0.38 9.61 22.53 0.22 -0.16 16 9 C -0.16 -2.39 10.02 22.23 0.22 -2.17 16 10 C -0.03 -0.53 10.03 22.30 0.22 -0.30 16 11 C -0.23 -5.94 8.89 22.34 0.20 -5.74 16 12 C 0.17 5.37 6.68 22.86 0.15 5.52 16 13 O -0.30 -11.66 7.94 -68.68 -0.55 -12.21 16 14 C 0.08 3.11 2.74 31.79 0.09 3.20 16 15 H 0.10 3.47 6.26 -2.39 -0.01 3.46 16 16 C -0.12 -5.23 6.81 31.99 0.22 -5.01 16 17 C 0.16 8.16 5.89 86.86 0.51 8.68 16 18 N -0.62 -33.87 3.40 -691.23 -2.35 -36.22 16 19 C -0.25 -14.32 10.28 84.03 0.86 -13.46 16 20 H 0.08 4.46 7.83 -2.91 -0.02 4.44 16 21 C -0.06 -3.70 5.49 84.86 0.47 -3.23 16 22 N -0.95 -57.27 10.09 21.65 0.22 -57.06 16 23 Si 0.99 46.37 29.55 68.60 2.03 48.40 16 24 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 25 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 26 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 27 C 0.12 5.44 6.82 86.67 0.59 6.03 16 28 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 29 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.08 0.64 8.14 -2.38 -0.02 0.62 16 31 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.16 2.26 7.61 -2.91 -0.02 2.24 16 36 H 0.17 1.14 8.06 -2.91 -0.02 1.11 16 37 H 0.17 1.69 8.06 -2.91 -0.02 1.67 16 38 H 0.14 3.54 5.60 -2.91 -0.02 3.52 16 39 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 40 H 0.10 3.44 8.14 -2.39 -0.02 3.42 16 41 H 0.08 4.67 5.88 -2.39 -0.01 4.65 16 42 H 0.01 0.35 8.14 -2.38 -0.02 0.33 16 43 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 44 H 0.04 1.77 7.79 -2.39 -0.02 1.75 16 45 H 0.02 0.85 8.06 -2.39 -0.02 0.83 16 Total: -1.00 -75.60 370.31 5.68 -69.92 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: 0.98 Total: 13.97 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: 5.49 Total: 3.91 kcal Atomic # 7 Polarization: -91.14 SS G_CDS: -2.13 Total: -93.28 kcal Atomic # 8 Polarization: -42.24 SS G_CDS: -0.68 Total: -42.92 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.40 kcal Total: -75.60 5.68 -69.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231340044.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.065 kcal (2) G-P(sol) polarization free energy of solvation -75.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds