Wall clock time and date at job start Tue Mar 31 2020 13:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.46911 * 2 1 4 4 O 1.45205 * 109.46973 * 180.02562 * 3 2 1 5 5 C 1.34753 * 116.99899 * 179.97438 * 4 3 2 6 6 O 1.21509 * 120.00083 * 0.02562 * 5 4 3 7 7 C 1.47399 * 119.99896 * 179.97438 * 5 4 3 8 8 C 1.39773 * 120.19611 * 359.97438 * 7 5 4 9 9 C 1.37766 * 119.90071 * 180.02562 * 8 7 5 10 10 C 1.38563 * 120.30747 * 0.02562 * 9 8 7 11 11 C 1.38048 * 120.40525 * 359.74203 * 10 9 8 12 12 C 1.38707 * 120.08900 * 0.51009 * 11 10 9 13 13 O 1.35638 * 120.15841 * 179.77389 * 12 11 10 14 14 C 1.42907 * 116.99792 * 5.30723 * 13 12 11 15 15 H 1.08993 * 110.88436 * 38.42360 * 14 13 12 16 16 C 1.55150 * 111.00418 * 162.34979 * 14 13 12 17 17 C 1.54331 * 103.02325 * 153.38220 * 16 14 13 18 18 N 1.47026 * 107.26387 * 338.13860 * 17 16 14 19 19 C 1.36934 * 125.64913 * 178.84391 * 18 17 16 20 20 H 1.08005 * 120.00129 * 179.69008 * 19 18 17 21 21 C 1.38807 * 119.99964 * 359.42345 * 19 18 17 22 22 N 1.31620 * 119.99985 * 0.27015 * 21 19 18 23 23 Si 1.86805 * 120.00183 * 180.27148 * 21 19 18 24 24 H 1.48498 * 109.46985 * 89.99757 * 23 21 19 25 25 H 1.48495 * 109.47148 * 209.99931 * 23 21 19 26 26 H 1.48503 * 109.46920 * 329.99908 * 23 21 19 27 27 C 1.47429 * 108.70219 * 358.58777 * 18 17 16 28 28 H 1.08998 * 109.47016 * 299.99803 * 1 2 3 29 29 H 1.08997 * 109.47608 * 60.00207 * 1 2 3 30 30 H 1.09006 * 109.47255 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46747 * 239.99806 * 2 1 3 32 32 H 1.08999 * 109.46921 * 120.00071 * 2 1 3 33 33 H 1.08999 * 109.47740 * 59.99830 * 3 2 1 34 34 H 1.09008 * 109.47297 * 299.99797 * 3 2 1 35 35 H 1.07998 * 120.04715 * 0.04491 * 8 7 5 36 36 H 1.08001 * 119.84789 * 180.02562 * 9 8 7 37 37 H 1.08001 * 119.79497 * 179.97438 * 10 9 8 38 38 H 1.07995 * 119.95878 * 180.28005 * 11 10 9 39 39 H 1.09003 * 110.72348 * 271.94436 * 16 14 13 40 40 H 1.09004 * 110.72496 * 35.03653 * 16 14 13 41 41 H 1.09001 * 109.99457 * 218.66843 * 17 16 14 42 42 H 1.09000 * 109.78347 * 97.49067 * 17 16 14 43 43 H 0.97000 * 120.00117 * 179.97438 * 22 21 19 44 44 H 1.09001 * 110.36749 * 143.19371 * 27 18 17 45 45 H 1.09003 * 110.35995 * 265.40527 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 8 3.4920 1.4425 -0.0006 5 6 4.1037 2.6431 -0.0012 6 8 3.4419 3.6622 -0.0008 7 6 5.5757 2.7203 -0.0013 8 6 6.3410 1.5507 -0.0002 9 6 7.7163 1.6299 0.0003 10 6 8.3457 2.8644 0.0002 11 6 7.6022 4.0276 -0.0057 12 6 6.2165 3.9673 -0.0010 13 8 5.4847 5.1093 -0.0021 14 6 6.2018 6.3392 -0.1262 15 1 7.0324 6.2359 -0.8243 16 6 5.2566 7.4935 -0.5518 17 6 5.9579 8.7450 0.0171 18 7 6.8414 8.2945 1.1026 19 6 7.6593 9.0979 1.8513 20 1 8.2691 8.6692 2.6329 21 6 7.7089 10.4626 1.6021 22 7 6.9658 10.9851 0.6497 23 14 8.8304 11.5575 2.6185 24 1 10.1624 11.6419 1.9675 25 1 8.2399 12.9165 2.7157 26 1 8.9804 10.9844 3.9802 27 6 6.6962 6.8354 1.2555 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.6766 1.9563 -0.8901 35 1 5.8548 0.5863 0.0000 36 1 8.3068 0.7256 0.0007 37 1 9.4244 2.9168 0.0010 38 1 8.1002 4.9859 -0.0104 39 1 5.1822 7.5505 -1.6378 40 1 4.2701 7.3689 -0.1052 41 1 5.2168 9.4424 0.4078 42 1 6.5464 9.2255 -0.7645 43 1 7.0002 11.9387 0.4758 44 1 7.6568 6.3821 1.4999 45 1 5.9619 6.6062 2.0278 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231340045.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:58 Heat of formation + Delta-G solvation = -73.466341 kcal Electronic energy + Delta-G solvation = -26641.981429 eV Core-core repulsion = 22818.731396 eV Total energy + Delta-G solvation = -3823.250033 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.73096 -39.65870 -37.86402 -36.57551 -36.09324 -34.06689 -32.37467 -31.50602 -30.11851 -29.11460 -27.48002 -27.00327 -24.60907 -24.14375 -22.62159 -21.79627 -21.02631 -20.31482 -20.00694 -18.33558 -17.52093 -17.07434 -16.69229 -16.61690 -15.57761 -15.24668 -15.00828 -14.85015 -14.68214 -14.49089 -13.96726 -13.71479 -13.70658 -12.98892 -12.83694 -12.72700 -12.42773 -12.37731 -12.34447 -11.98050 -11.90108 -11.61238 -11.40652 -11.39837 -11.20373 -10.97708 -10.83055 -10.56532 -10.33893 -10.32342 -10.20874 -10.07856 -9.87973 -9.71917 -9.16569 -8.64747 -8.21022 -6.90684 -5.75788 -3.10714 0.71533 1.36357 2.59231 2.64491 3.30811 3.38164 3.43522 3.45651 3.74214 4.46281 4.47818 4.60208 4.67928 4.74868 4.85315 4.98303 5.06973 5.16111 5.17279 5.23131 5.31695 5.31938 5.35542 5.43729 5.52021 5.60813 5.61316 5.69468 5.74141 5.76402 5.85010 6.08610 6.16151 6.21514 6.33671 6.34841 6.44441 6.45012 6.57390 6.59795 6.73444 7.49711 7.55386 7.59544 7.77597 7.90377 8.19198 9.15926 9.75567 10.40248 11.35922 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.018234 B = 0.002850 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.264218 B = 9820.521795 C =10907.687132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C 0.067 3.933 4 O -0.361 6.361 5 C 0.507 3.493 6 O -0.483 6.483 7 C -0.175 4.175 8 C -0.027 4.027 9 C -0.183 4.183 10 C -0.041 4.041 11 C -0.222 4.222 12 C 0.205 3.795 13 O -0.272 6.272 14 C 0.058 3.942 15 H 0.082 0.918 16 C -0.132 4.132 17 C 0.179 3.821 18 N -0.602 5.602 19 C -0.231 4.231 20 H 0.079 0.921 21 C -0.007 4.007 22 N -0.921 5.921 23 Si 0.915 3.085 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.281 1.281 27 C 0.119 3.881 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.139 0.861 36 H 0.129 0.871 37 H 0.130 0.870 38 H 0.145 0.855 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.050 0.950 42 H 0.052 0.948 43 H 0.254 0.746 44 H 0.044 0.956 45 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.977 -23.281 -3.889 24.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.007 4.007 4 O -0.279 6.279 5 C 0.351 3.649 6 O -0.370 6.370 7 C -0.176 4.176 8 C -0.046 4.046 9 C -0.201 4.201 10 C -0.059 4.059 11 C -0.240 4.240 12 C 0.156 3.844 13 O -0.182 6.182 14 C 0.002 3.998 15 H 0.100 0.900 16 C -0.171 4.171 17 C 0.054 3.946 18 N -0.330 5.330 19 C -0.359 4.359 20 H 0.097 0.903 21 C -0.203 4.203 22 N -0.569 5.569 23 Si 0.745 3.255 24 H -0.215 1.215 25 H -0.216 1.216 26 H -0.206 1.206 27 C -0.008 4.008 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.157 0.843 36 H 0.147 0.853 37 H 0.148 0.852 38 H 0.162 0.838 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.064 0.936 44 H 0.062 0.938 45 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -5.403 -22.678 -3.861 23.630 hybrid contribution 0.678 0.804 0.516 1.172 sum -4.725 -21.874 -3.344 22.627 Atomic orbital electron populations 1.21694 0.94232 1.02414 1.02454 1.21506 0.96086 0.94847 1.03604 1.23082 0.76506 0.98317 1.02774 1.86491 1.23124 1.33222 1.85084 1.20870 0.88762 0.81391 0.73847 1.90924 1.66264 1.35508 1.44304 1.18403 0.89413 0.92057 1.17774 1.21238 0.93710 0.96906 0.92716 1.20976 0.94232 0.97962 1.06909 1.21232 1.00225 0.91744 0.92716 1.21483 0.92286 1.00808 1.09451 1.19110 0.90072 0.86188 0.89029 1.86351 1.35074 1.12282 1.84488 1.24007 0.95478 0.80979 0.99369 0.90027 1.23003 0.99144 0.94326 1.00595 1.21219 0.92534 0.90301 0.90518 1.44344 1.48844 1.00275 1.39504 1.19053 1.16617 0.88602 1.11607 0.90292 1.24827 0.99922 0.96686 0.98904 1.69947 1.42357 1.11564 1.33006 0.86079 0.79918 0.80055 0.79467 1.21528 1.21590 1.20636 1.21978 0.98202 0.87145 0.93475 0.92256 0.92277 0.91749 0.90846 0.90818 0.91208 0.91258 0.84281 0.85311 0.85176 0.83784 0.91331 0.90879 0.93225 0.92957 0.93597 0.93822 0.95156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.91 37.16 0.37 -0.53 16 2 C -0.12 -0.90 6.31 -26.73 -0.17 -1.07 16 3 C 0.07 0.70 5.48 37.15 0.20 0.90 16 4 O -0.36 -4.58 9.47 -40.64 -0.38 -4.97 16 5 C 0.51 7.93 7.89 34.46 0.27 8.20 16 6 O -0.48 -9.14 14.95 -26.60 -0.40 -9.53 16 7 C -0.17 -2.56 5.89 -104.86 -0.62 -3.17 16 8 C -0.03 -0.31 9.61 -39.18 -0.38 -0.68 16 9 C -0.18 -1.80 10.02 -39.63 -0.40 -2.20 16 10 C -0.04 -0.45 10.03 -39.53 -0.40 -0.84 16 11 C -0.22 -3.08 8.71 -39.48 -0.34 -3.42 16 12 C 0.21 3.31 6.65 -38.67 -0.26 3.05 16 13 O -0.27 -5.13 8.03 -40.50 -0.33 -5.45 16 14 C 0.06 1.11 2.82 -24.59 -0.07 1.04 16 15 H 0.08 1.45 6.61 -51.93 -0.34 1.11 16 16 C -0.13 -2.67 6.68 -24.90 -0.17 -2.84 16 17 C 0.18 4.41 5.38 -3.06 -0.02 4.39 16 18 N -0.60 -15.60 3.39 -170.06 -0.58 -16.17 16 19 C -0.23 -6.45 10.28 -15.06 -0.15 -6.60 16 20 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 21 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 22 N -0.92 -27.02 10.31 55.49 0.57 -26.44 16 23 Si 0.91 22.05 29.55 -169.99 -5.02 17.03 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 27 C 0.12 2.57 6.60 -2.53 -0.02 2.55 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 35 H 0.14 1.24 7.61 -52.49 -0.40 0.84 16 36 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 37 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 38 H 0.14 2.05 5.31 -52.49 -0.28 1.77 16 39 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16 41 H 0.05 1.35 7.53 -51.93 -0.39 0.96 16 42 H 0.05 1.39 7.36 -51.93 -0.38 1.00 16 43 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 44 H 0.04 0.89 7.24 -51.93 -0.38 0.51 16 45 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 370.10 15.07 5.58 5.58 Total: -1.00 -32.64 370.10 -9.58 -42.22 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -6.79 Total: -0.74 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: -2.23 Total: -1.51 kcal Atomic # 7 Polarization: -42.61 SS G_CDS: 0.00 Total: -42.62 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: -1.11 Total: -19.95 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.64 -9.58 -42.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231340045.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.247 kcal (2) G-P(sol) polarization free energy of solvation -32.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds