Wall clock time and date at job start Tue Mar 31 2020 13:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.46911 * 2 1 4 4 O 1.45205 * 109.46973 * 180.02562 * 3 2 1 5 5 C 1.34753 * 116.99899 * 179.97438 * 4 3 2 6 6 O 1.21509 * 120.00083 * 0.02562 * 5 4 3 7 7 C 1.47399 * 119.99896 * 179.97438 * 5 4 3 8 8 C 1.39773 * 120.19611 * 359.97438 * 7 5 4 9 9 C 1.37766 * 119.90071 * 180.02562 * 8 7 5 10 10 C 1.38563 * 120.30747 * 0.02562 * 9 8 7 11 11 C 1.38048 * 120.40525 * 359.74203 * 10 9 8 12 12 C 1.38707 * 120.08900 * 0.51009 * 11 10 9 13 13 O 1.35638 * 120.15841 * 179.77389 * 12 11 10 14 14 C 1.42907 * 116.99792 * 5.30723 * 13 12 11 15 15 H 1.08993 * 110.88436 * 38.42360 * 14 13 12 16 16 C 1.55150 * 111.00418 * 162.34979 * 14 13 12 17 17 C 1.54331 * 103.02325 * 153.38220 * 16 14 13 18 18 N 1.47026 * 107.26387 * 338.13860 * 17 16 14 19 19 C 1.36934 * 125.64913 * 178.84391 * 18 17 16 20 20 H 1.08005 * 120.00129 * 179.69008 * 19 18 17 21 21 C 1.38807 * 119.99964 * 359.42345 * 19 18 17 22 22 N 1.31620 * 119.99985 * 0.27015 * 21 19 18 23 23 Si 1.86805 * 120.00183 * 180.27148 * 21 19 18 24 24 H 1.48498 * 109.46985 * 89.99757 * 23 21 19 25 25 H 1.48495 * 109.47148 * 209.99931 * 23 21 19 26 26 H 1.48503 * 109.46920 * 329.99908 * 23 21 19 27 27 C 1.47429 * 108.70219 * 358.58777 * 18 17 16 28 28 H 1.08998 * 109.47016 * 299.99803 * 1 2 3 29 29 H 1.08997 * 109.47608 * 60.00207 * 1 2 3 30 30 H 1.09006 * 109.47255 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46747 * 239.99806 * 2 1 3 32 32 H 1.08999 * 109.46921 * 120.00071 * 2 1 3 33 33 H 1.08999 * 109.47740 * 59.99830 * 3 2 1 34 34 H 1.09008 * 109.47297 * 299.99797 * 3 2 1 35 35 H 1.07998 * 120.04715 * 0.04491 * 8 7 5 36 36 H 1.08001 * 119.84789 * 180.02562 * 9 8 7 37 37 H 1.08001 * 119.79497 * 179.97438 * 10 9 8 38 38 H 1.07995 * 119.95878 * 180.28005 * 11 10 9 39 39 H 1.09003 * 110.72348 * 271.94436 * 16 14 13 40 40 H 1.09004 * 110.72496 * 35.03653 * 16 14 13 41 41 H 1.09001 * 109.99457 * 218.66843 * 17 16 14 42 42 H 1.09000 * 109.78347 * 97.49067 * 17 16 14 43 43 H 0.97000 * 120.00117 * 179.97438 * 22 21 19 44 44 H 1.09001 * 110.36749 * 143.19371 * 27 18 17 45 45 H 1.09003 * 110.35995 * 265.40527 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 8 3.4920 1.4425 -0.0006 5 6 4.1037 2.6431 -0.0012 6 8 3.4419 3.6622 -0.0008 7 6 5.5757 2.7203 -0.0013 8 6 6.3410 1.5507 -0.0002 9 6 7.7163 1.6299 0.0003 10 6 8.3457 2.8644 0.0002 11 6 7.6022 4.0276 -0.0057 12 6 6.2165 3.9673 -0.0010 13 8 5.4847 5.1093 -0.0021 14 6 6.2018 6.3392 -0.1262 15 1 7.0324 6.2359 -0.8243 16 6 5.2566 7.4935 -0.5518 17 6 5.9579 8.7450 0.0171 18 7 6.8414 8.2945 1.1026 19 6 7.6593 9.0979 1.8513 20 1 8.2691 8.6692 2.6329 21 6 7.7089 10.4626 1.6021 22 7 6.9658 10.9851 0.6497 23 14 8.8304 11.5575 2.6185 24 1 10.1624 11.6419 1.9675 25 1 8.2399 12.9165 2.7157 26 1 8.9804 10.9844 3.9802 27 6 6.6962 6.8354 1.2555 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.6766 1.9563 -0.8901 35 1 5.8548 0.5863 0.0000 36 1 8.3068 0.7256 0.0007 37 1 9.4244 2.9168 0.0010 38 1 8.1002 4.9859 -0.0104 39 1 5.1822 7.5505 -1.6378 40 1 4.2701 7.3689 -0.1052 41 1 5.2168 9.4424 0.4078 42 1 6.5464 9.2255 -0.7645 43 1 7.0002 11.9387 0.4758 44 1 7.6568 6.3821 1.4999 45 1 5.9619 6.6062 2.0278 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231340045.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:58 Heat of formation + Delta-G solvation = -90.722172 kcal Electronic energy + Delta-G solvation = -26642.729698 eV Core-core repulsion = 22818.731396 eV Total energy + Delta-G solvation = -3823.998302 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.88127 -40.88396 -39.19099 -37.78066 -37.56296 -34.77794 -34.34609 -32.52119 -31.52713 -30.68883 -29.19313 -27.81954 -26.56575 -25.12175 -23.83770 -22.49575 -22.31540 -21.91561 -21.58374 -19.50677 -19.04815 -18.62704 -17.78448 -17.67537 -16.88128 -16.64858 -16.61481 -15.94487 -15.86084 -15.53289 -15.47076 -15.19736 -14.70309 -14.38142 -14.06297 -14.03268 -13.80117 -13.56921 -13.52612 -13.07770 -13.04626 -12.92906 -12.81982 -12.67731 -12.32787 -12.17727 -12.11766 -12.07573 -12.06143 -11.90526 -11.71437 -11.54498 -11.45017 -11.34770 -10.76148 -10.14073 -9.30797 -9.00558 -7.89894 -5.28213 -0.29823 0.38341 1.45436 1.48011 1.54440 1.56725 1.59125 2.00380 2.47740 2.75734 3.28988 3.51052 3.59420 3.63667 3.78874 3.86594 3.91268 3.94109 3.96465 4.02419 4.21187 4.27580 4.35696 4.41437 4.50335 4.51565 4.55417 4.67057 4.75416 4.76646 4.87050 4.89511 4.94429 5.09194 5.16424 5.17331 5.24215 5.33988 5.38185 5.44910 5.46918 5.52520 5.64859 5.76754 6.10099 6.34257 6.76438 7.02300 7.66950 8.31559 9.20850 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.018234 B = 0.002850 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.264218 B = 9820.521795 C =10907.687132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.114 4.114 3 C 0.060 3.940 4 O -0.352 6.352 5 C 0.506 3.494 6 O -0.528 6.528 7 C -0.193 4.193 8 C -0.020 4.020 9 C -0.164 4.164 10 C -0.032 4.032 11 C -0.234 4.234 12 C 0.169 3.831 13 O -0.293 6.293 14 C 0.079 3.921 15 H 0.097 0.903 16 C -0.122 4.122 17 C 0.190 3.810 18 N -0.621 5.621 19 C -0.248 4.248 20 H 0.086 0.914 21 C -0.064 4.064 22 N -0.951 5.951 23 Si 0.985 3.015 24 H -0.281 1.281 25 H -0.294 1.294 26 H -0.269 1.269 27 C 0.120 3.880 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.166 0.834 36 H 0.172 0.828 37 H 0.163 0.837 38 H 0.136 0.864 39 H 0.092 0.908 40 H 0.067 0.933 41 H 0.013 0.987 42 H 0.029 0.971 43 H 0.250 0.750 44 H 0.059 0.941 45 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.248 -26.644 -3.813 27.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.152 4.152 3 C -0.014 4.014 4 O -0.269 6.269 5 C 0.352 3.648 6 O -0.419 6.419 7 C -0.195 4.195 8 C -0.038 4.038 9 C -0.182 4.182 10 C -0.050 4.050 11 C -0.252 4.252 12 C 0.121 3.879 13 O -0.205 6.205 14 C 0.022 3.978 15 H 0.114 0.886 16 C -0.161 4.161 17 C 0.065 3.935 18 N -0.349 5.349 19 C -0.376 4.376 20 H 0.104 0.896 21 C -0.257 4.257 22 N -0.600 5.600 23 Si 0.812 3.188 24 H -0.207 1.207 25 H -0.221 1.221 26 H -0.194 1.194 27 C -0.006 4.006 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.100 0.900 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.183 0.817 36 H 0.189 0.811 37 H 0.180 0.820 38 H 0.153 0.847 39 H 0.111 0.889 40 H 0.085 0.915 41 H 0.032 0.968 42 H 0.047 0.953 43 H 0.059 0.941 44 H 0.077 0.923 45 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -3.668 -26.114 -3.779 26.640 hybrid contribution 0.144 1.650 0.510 1.733 sum -3.524 -24.464 -3.269 24.932 Atomic orbital electron populations 1.21711 0.93152 1.03479 1.02358 1.21512 0.96844 0.92419 1.04378 1.23363 0.75302 1.00611 1.02135 1.86487 1.24348 1.31655 1.84395 1.21230 0.89404 0.81457 0.72693 1.90897 1.67301 1.37029 1.46657 1.18634 0.89119 0.92793 1.18972 1.21600 0.94377 0.96577 0.91200 1.21480 0.93813 0.99086 1.03782 1.21661 1.01761 0.90998 0.90597 1.21523 0.91440 1.01835 1.10413 1.19466 0.91131 0.85624 0.91635 1.86308 1.35701 1.12708 1.85740 1.23612 0.95183 0.81356 0.97635 0.88554 1.22817 0.98502 0.92985 1.01757 1.20921 0.91364 0.91622 0.89625 1.44623 1.48683 1.02113 1.39509 1.19464 1.16809 0.89345 1.11998 0.89636 1.25730 1.01627 0.98083 1.00266 1.70165 1.43838 1.11430 1.34525 0.84994 0.77908 0.77548 0.78339 1.20733 1.22063 1.19401 1.22032 0.98593 0.85076 0.94877 0.92486 0.92343 0.90049 0.89940 0.90096 0.92089 0.91848 0.81682 0.81071 0.81950 0.84671 0.88917 0.91469 0.96843 0.95323 0.94107 0.92326 0.96653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.91 71.98 0.71 -0.85 16 2 C -0.11 -1.48 6.31 30.59 0.19 -1.29 16 3 C 0.06 1.23 5.48 71.98 0.39 1.62 16 4 O -0.35 -8.65 9.47 -56.64 -0.54 -9.19 16 5 C 0.51 15.91 7.89 70.23 0.55 16.47 16 6 O -0.53 -20.83 14.95 26.81 0.40 -20.43 16 7 C -0.19 -5.47 5.89 -20.02 -0.12 -5.59 16 8 C -0.02 -0.37 9.61 22.53 0.22 -0.16 16 9 C -0.16 -2.44 10.02 22.24 0.22 -2.22 16 10 C -0.03 -0.58 10.03 22.30 0.22 -0.36 16 11 C -0.23 -6.13 8.71 22.34 0.19 -5.94 16 12 C 0.17 5.40 6.65 22.86 0.15 5.55 16 13 O -0.29 -11.33 8.03 -68.60 -0.55 -11.88 16 14 C 0.08 3.08 2.82 31.98 0.09 3.17 16 15 H 0.10 3.43 6.61 -2.39 -0.02 3.41 16 16 C -0.12 -5.11 6.68 31.78 0.21 -4.90 16 17 C 0.19 9.82 5.38 86.73 0.47 10.28 16 18 N -0.62 -33.24 3.39 -691.95 -2.35 -35.59 16 19 C -0.25 -14.11 10.28 84.03 0.86 -13.25 16 20 H 0.09 4.62 7.83 -2.91 -0.02 4.60 16 21 C -0.06 -3.67 5.49 84.86 0.47 -3.21 16 22 N -0.95 -57.72 10.31 21.65 0.22 -57.49 16 23 Si 0.98 45.87 29.55 68.60 2.03 47.89 16 24 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 25 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 26 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 27 C 0.12 5.32 6.60 86.85 0.57 5.89 16 28 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.08 0.60 8.14 -2.38 -0.02 0.58 16 31 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 35 H 0.17 2.23 7.61 -2.91 -0.02 2.21 16 36 H 0.17 1.20 8.06 -2.91 -0.02 1.18 16 37 H 0.16 1.88 8.06 -2.91 -0.02 1.86 16 38 H 0.14 3.73 5.31 -2.91 -0.02 3.71 16 39 H 0.09 3.38 8.14 -2.39 -0.02 3.36 16 40 H 0.07 2.86 8.14 -2.38 -0.02 2.84 16 41 H 0.01 0.77 7.53 -2.39 -0.02 0.76 16 42 H 0.03 1.60 7.36 -2.39 -0.02 1.58 16 43 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 44 H 0.06 2.39 7.24 -2.39 -0.02 2.37 16 45 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -74.50 370.10 5.61 -68.89 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: 0.98 Total: 12.55 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: 5.42 Total: 5.25 kcal Atomic # 7 Polarization: -90.96 SS G_CDS: -2.13 Total: -93.08 kcal Atomic # 8 Polarization: -40.81 SS G_CDS: -0.69 Total: -41.50 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.89 kcal Total: -74.50 5.61 -68.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231340045.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.833 kcal (2) G-P(sol) polarization free energy of solvation -74.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds