Wall clock time and date at job start Tue Mar 31 2020 13:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46902 * 2 1 4 4 O 1.45198 * 109.47308 * 120.00024 * 2 1 3 5 5 C 1.34221 * 116.99991 * 89.99981 * 4 2 1 6 6 O 1.20825 * 120.00264 * 359.97438 * 5 4 2 7 7 C 1.50707 * 120.00100 * 180.02562 * 5 4 2 8 8 C 1.52991 * 109.47241 * 180.02562 * 7 5 4 9 9 N 1.46505 * 109.47165 * 180.02562 * 8 7 5 10 10 C 1.34780 * 119.99925 * 179.97438 * 9 8 7 11 11 O 1.21275 * 120.00369 * 359.97438 * 10 9 8 12 12 C 1.50700 * 119.99729 * 179.97438 * 10 9 8 13 13 H 1.09003 * 109.47099 * 322.43525 * 12 10 9 14 14 C 1.50703 * 109.47255 * 82.43223 * 12 10 9 15 15 H 1.08002 * 119.99717 * 54.77883 * 14 12 10 16 16 C 1.37878 * 119.99995 * 234.78269 * 14 12 10 17 17 N 1.31517 * 119.99554 * 175.92208 * 16 14 12 18 18 Si 1.86793 * 120.00153 * 355.91632 * 16 14 12 19 19 H 1.48494 * 109.47473 * 83.73622 * 18 16 14 20 20 H 1.48501 * 109.47143 * 203.73707 * 18 16 14 21 21 H 1.48507 * 109.47286 * 323.73564 * 18 16 14 22 22 C 1.50697 * 109.47123 * 202.43479 * 12 10 9 23 23 C 1.38230 * 120.00152 * 112.25371 * 22 12 10 24 24 C 1.38233 * 119.99934 * 179.97438 * 23 22 12 25 25 C 1.38232 * 120.00305 * 359.95464 * 24 23 22 26 26 C 1.38237 * 119.99727 * 0.02562 * 25 24 23 27 27 C 1.38231 * 120.00078 * 0.06436 * 26 25 24 28 28 H 1.09003 * 109.47155 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47418 * 299.99867 * 1 2 3 30 30 H 1.09003 * 109.47852 * 59.99948 * 1 2 3 31 31 H 1.08997 * 109.47175 * 239.99908 * 2 1 3 32 32 H 1.09002 * 109.46876 * 180.02562 * 3 2 1 33 33 H 1.09007 * 109.46999 * 300.00121 * 3 2 1 34 34 H 1.08997 * 109.47280 * 59.99973 * 3 2 1 35 35 H 1.09004 * 109.46972 * 59.99936 * 7 5 4 36 36 H 1.09004 * 109.46913 * 300.00100 * 7 5 4 37 37 H 1.08995 * 109.47458 * 59.99925 * 8 7 5 38 38 H 1.09004 * 109.47058 * 299.99778 * 8 7 5 39 39 H 0.97003 * 119.99794 * 359.97438 * 9 8 7 40 40 H 0.96996 * 119.99434 * 179.97438 * 17 16 14 41 41 H 1.07998 * 120.00183 * 359.97438 * 23 22 12 42 42 H 1.08000 * 120.00058 * 179.97438 * 24 23 22 43 43 H 1.07998 * 120.00160 * 179.71673 * 25 24 23 44 44 H 1.08004 * 120.00104 * 179.97438 * 26 25 24 45 45 H 1.08006 * 120.00279 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 2.2171 -2.0074 1.0851 6 8 1.9973 -2.5749 0.0413 7 6 2.7183 -2.7853 2.2746 8 6 2.8636 -4.2602 1.8950 9 7 3.3502 -5.0165 3.0515 10 6 3.5541 -6.3450 2.9507 11 8 3.3343 -6.9144 1.9028 12 6 4.0552 -7.1228 4.1402 13 1 4.7809 -6.5215 4.6880 14 6 2.8974 -7.4595 5.0443 15 1 2.0378 -7.9806 4.6494 16 6 2.9355 -7.1022 6.3754 17 7 1.8930 -7.3240 7.1458 18 14 4.4679 -6.3034 7.0845 19 1 4.4362 -4.8439 6.8131 20 1 4.5126 -6.5333 8.5510 21 1 5.6735 -6.8981 6.4534 22 6 4.7108 -8.3951 3.6685 23 6 6.0746 -8.5656 3.8159 24 6 6.6758 -9.7329 3.3837 25 6 5.9132 -10.7300 2.8050 26 6 4.5492 -10.5596 2.6580 27 6 3.9483 -9.3916 3.0885 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3635 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 3.1300 1.4425 -0.0005 33 1 1.6765 1.9564 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 2.0088 -2.6895 3.0965 36 1 3.6872 -2.3928 2.5834 37 1 3.5733 -4.3557 1.0733 38 1 1.8949 -4.6530 1.5860 39 1 3.5257 -4.5611 3.8899 40 1 1.9200 -7.0730 8.0824 41 1 6.6704 -7.7869 4.2687 42 1 7.7414 -9.8660 3.4984 43 1 6.3836 -11.6401 2.4632 44 1 3.9534 -11.3385 2.2055 45 1 2.8827 -9.2582 2.9733 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361434540.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:33 Heat of formation + Delta-G solvation = -135.192833 kcal Electronic energy + Delta-G solvation = -26198.818216 eV Core-core repulsion = 22372.891521 eV Total energy + Delta-G solvation = -3825.926694 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.73253 -40.95064 -39.46210 -38.11077 -36.16743 -35.49308 -34.20471 -33.40215 -31.99517 -31.61396 -29.45959 -28.22158 -26.33900 -25.02692 -23.35666 -22.90260 -22.38654 -21.60528 -20.98902 -19.11987 -18.93126 -18.03212 -17.66901 -17.60897 -17.19014 -16.56962 -16.46294 -16.07248 -15.69461 -15.41566 -15.19686 -14.82776 -14.76511 -14.59763 -14.38124 -14.10000 -14.03160 -13.71192 -13.38024 -13.19805 -13.18573 -13.01770 -12.88294 -12.75229 -12.72236 -12.57558 -12.03847 -11.93086 -11.89448 -11.73959 -11.66508 -11.50195 -11.40367 -10.89282 -10.59872 -10.04934 -9.63134 -9.37378 -8.33334 -6.43660 0.64129 0.71078 1.09193 1.36235 1.43484 1.47951 1.52914 1.87145 2.33241 2.49968 3.01093 3.17142 3.47884 3.79467 3.82643 3.91205 3.98063 4.08327 4.12883 4.23533 4.28179 4.36919 4.41439 4.42658 4.49287 4.65005 4.73497 4.73559 4.83087 4.83236 4.85137 4.88271 4.91464 5.11191 5.20573 5.21211 5.33614 5.39559 5.45608 5.52698 5.70621 5.75638 5.96048 6.20849 6.31967 6.59742 6.64900 6.67162 7.20744 7.42994 8.82224 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.013886 B = 0.003064 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.896377 B = 9135.570772 C =10278.494698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.068 3.932 3 C -0.143 4.143 4 O -0.352 6.352 5 C 0.471 3.529 6 O -0.540 6.540 7 C -0.117 4.117 8 C 0.137 3.863 9 N -0.722 5.722 10 C 0.526 3.474 11 O -0.588 6.588 12 C 0.038 3.962 13 H 0.080 0.920 14 C -0.508 4.508 15 H 0.026 0.974 16 C 0.028 3.972 17 N -0.934 5.934 18 Si 0.932 3.068 19 H -0.233 1.233 20 H -0.289 1.289 21 H -0.243 1.243 22 C -0.066 4.066 23 C -0.144 4.144 24 C -0.125 4.125 25 C -0.134 4.134 26 C -0.138 4.138 27 C -0.102 4.102 28 H 0.040 0.960 29 H 0.075 0.925 30 H 0.095 0.905 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.098 0.902 34 H 0.074 0.926 35 H 0.134 0.866 36 H 0.147 0.853 37 H 0.062 0.938 38 H 0.045 0.955 39 H 0.412 0.588 40 H 0.272 0.728 41 H 0.130 0.870 42 H 0.152 0.848 43 H 0.150 0.850 44 H 0.131 0.869 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.909 15.169 -8.227 18.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.014 3.986 3 C -0.200 4.200 4 O -0.269 6.269 5 C 0.315 3.685 6 O -0.430 6.430 7 C -0.154 4.154 8 C 0.013 3.987 9 N -0.375 5.375 10 C 0.315 3.685 11 O -0.468 6.468 12 C 0.016 3.984 13 H 0.098 0.902 14 C -0.545 4.545 15 H 0.045 0.955 16 C -0.172 4.172 17 N -0.572 5.572 18 Si 0.753 3.247 19 H -0.156 1.156 20 H -0.215 1.215 21 H -0.167 1.167 22 C -0.067 4.067 23 C -0.162 4.162 24 C -0.142 4.142 25 C -0.152 4.152 26 C -0.156 4.156 27 C -0.121 4.121 28 H 0.059 0.941 29 H 0.094 0.906 30 H 0.114 0.886 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.117 0.883 34 H 0.093 0.907 35 H 0.152 0.848 36 H 0.165 0.835 37 H 0.081 0.919 38 H 0.064 0.936 39 H 0.249 0.751 40 H 0.081 0.919 41 H 0.148 0.852 42 H 0.170 0.830 43 H 0.168 0.832 44 H 0.149 0.851 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.567 14.685 -9.133 18.498 hybrid contribution -0.494 0.028 0.705 0.861 sum 6.073 14.713 -8.428 18.010 Atomic orbital electron populations 1.22225 0.93612 1.02202 1.04562 1.23049 0.95377 0.94265 0.85927 1.21902 1.02154 0.91443 1.04492 1.86558 1.76791 1.21400 1.42127 1.23690 0.73465 0.81636 0.89661 1.90691 1.49316 1.70625 1.32319 1.21503 1.07017 0.91527 0.95339 1.20860 0.99483 0.89806 0.88571 1.45750 1.68604 1.07794 1.15305 1.21465 0.75750 0.82093 0.89163 1.90566 1.54039 1.70105 1.32117 1.18268 0.96378 0.91689 0.92037 0.90207 1.20481 1.01556 1.38691 0.93814 0.95523 1.25978 0.99457 0.95182 0.96542 1.70025 1.31813 1.48047 1.07269 0.85957 0.79967 0.81191 0.77598 1.15573 1.21489 1.16680 1.20074 0.93887 0.96541 0.96168 1.21291 0.93415 0.99543 1.01937 1.21386 1.00946 0.93176 0.98713 1.21365 0.93239 1.00207 1.00368 1.21349 0.96316 0.97036 1.00892 1.20863 0.98820 0.94319 0.98070 0.94124 0.90619 0.88597 0.91028 0.91593 0.88344 0.90694 0.84816 0.83539 0.91940 0.93609 0.75148 0.91878 0.85226 0.83045 0.83201 0.85142 0.89774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.69 9.55 71.98 0.69 -2.00 16 2 C 0.07 1.21 3.18 30.59 0.10 1.30 16 3 C -0.14 -1.58 9.57 71.98 0.69 -0.89 16 4 O -0.35 -7.48 9.88 -51.33 -0.51 -7.98 16 5 C 0.47 11.73 7.93 71.24 0.56 12.30 16 6 O -0.54 -17.33 15.20 21.97 0.33 -16.99 16 7 C -0.12 -2.45 5.92 29.85 0.18 -2.28 16 8 C 0.14 4.29 4.96 86.38 0.43 4.72 16 9 N -0.72 -25.33 5.56 -463.07 -2.57 -27.90 16 10 C 0.53 23.68 6.93 87.66 0.61 24.29 16 11 O -0.59 -30.25 15.23 -3.02 -0.05 -30.29 16 12 C 0.04 1.74 2.22 -13.03 -0.03 1.71 16 13 H 0.08 3.25 4.57 -2.39 -0.01 3.24 16 14 C -0.51 -27.74 8.24 25.60 0.21 -27.53 16 15 H 0.03 1.70 7.69 -2.91 -0.02 1.68 16 16 C 0.03 1.51 5.47 84.65 0.46 1.97 16 17 N -0.93 -54.51 13.96 21.45 0.30 -54.21 16 18 Si 0.93 37.77 26.93 68.60 1.85 39.62 16 19 H -0.23 -8.01 7.11 99.48 0.71 -7.31 16 20 H -0.29 -11.98 7.11 99.48 0.71 -11.27 16 21 H -0.24 -9.16 6.81 99.48 0.68 -8.48 16 22 C -0.07 -2.96 4.53 -19.87 -0.09 -3.05 16 23 C -0.14 -5.38 9.67 22.27 0.22 -5.17 16 24 C -0.12 -3.90 10.05 22.27 0.22 -3.68 16 25 C -0.13 -4.20 10.05 22.27 0.22 -3.98 16 26 C -0.14 -5.17 10.05 22.27 0.22 -4.95 16 27 C -0.10 -4.72 8.05 22.27 0.18 -4.54 16 28 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 30 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.07 1.47 7.16 -2.39 -0.02 1.45 16 32 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.10 0.69 8.14 -2.38 -0.02 0.67 16 34 H 0.07 0.75 8.14 -2.39 -0.02 0.74 16 35 H 0.13 2.40 8.14 -2.38 -0.02 2.38 16 36 H 0.15 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.06 2.08 8.10 -2.39 -0.02 2.06 16 38 H 0.05 1.69 8.10 -2.39 -0.02 1.67 16 39 H 0.41 12.12 8.47 -92.71 -0.79 11.33 16 40 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 41 H 0.13 4.22 7.96 -2.91 -0.02 4.20 16 42 H 0.15 3.48 8.06 -2.91 -0.02 3.45 16 43 H 0.15 3.46 8.06 -2.91 -0.02 3.44 16 44 H 0.13 4.20 8.06 -2.91 -0.02 4.18 16 45 H 0.08 4.36 7.44 -2.91 -0.02 4.34 16 Total: -1.00 -76.49 381.26 4.40 -72.08 By element: Atomic # 1 Polarization: 37.29 SS G_CDS: 0.18 Total: 37.47 kcal Atomic # 6 Polarization: -16.66 SS G_CDS: 4.87 Total: -11.78 kcal Atomic # 7 Polarization: -79.84 SS G_CDS: -2.27 Total: -82.11 kcal Atomic # 8 Polarization: -55.05 SS G_CDS: -0.22 Total: -55.27 kcal Atomic # 14 Polarization: 37.77 SS G_CDS: 1.85 Total: 39.62 kcal Total: -76.49 4.40 -72.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361434540.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.108 kcal (2) G-P(sol) polarization free energy of solvation -76.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds