Wall clock time and date at job start Tue Mar 31 2020 13:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.52345 * 2 1 4 4 C 1.53035 * 109.49719 * 239.91858 * 2 1 3 5 5 C 1.53042 * 109.54075 * 301.41323 * 4 2 1 6 6 H 1.09001 * 109.49737 * 58.61822 * 5 4 2 7 7 C 1.52999 * 109.49982 * 178.68071 * 5 4 2 8 8 O 1.42898 * 109.47297 * 184.99642 * 7 5 4 9 9 C 1.53625 * 109.24225 * 298.51138 * 5 4 2 10 10 N 1.46930 * 108.54039 * 54.85144 * 9 5 4 11 11 C 1.34774 * 120.62607 * 126.37380 * 10 9 5 12 12 O 1.21596 * 119.99853 * 184.53488 * 11 10 9 13 13 C 1.47531 * 120.00189 * 4.53137 * 11 10 9 14 14 C 1.39667 * 120.19991 * 30.42800 * 13 11 10 15 15 C 1.37824 * 119.92245 * 179.97438 * 14 13 11 16 16 C 1.38565 * 120.32491 * 0.02562 * 15 14 13 17 17 C 1.38025 * 120.40372 * 359.97438 * 16 15 14 18 18 C 1.38834 * 120.06888 * 0.02562 * 17 16 15 19 19 O 1.35522 * 120.16158 * 179.97438 * 18 17 16 20 20 C 1.34816 * 116.99883 * 354.14810 * 19 18 17 21 21 H 1.07994 * 120.00030 * 354.62718 * 20 19 18 22 22 C 1.38700 * 119.99765 * 174.63006 * 20 19 18 23 23 N 1.31523 * 120.00097 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99822 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47002 * 60.00288 * 24 22 20 26 26 H 1.48501 * 109.47218 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47346 * 300.00251 * 24 22 20 28 28 C 1.46926 * 118.74058 * 306.09558 * 10 9 5 29 29 H 1.09000 * 109.47024 * 299.91509 * 1 2 3 30 30 H 1.08994 * 109.47297 * 59.91760 * 1 2 3 31 31 H 1.09006 * 109.46893 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46183 * 61.43320 * 4 2 1 33 33 H 1.08998 * 109.46091 * 181.40348 * 4 2 1 34 34 H 1.08994 * 109.47493 * 304.99931 * 7 5 4 35 35 H 1.09009 * 109.46925 * 64.99965 * 7 5 4 36 36 H 0.96699 * 114.00528 * 179.97438 * 8 7 5 37 37 H 1.08999 * 109.73696 * 295.11856 * 9 5 4 38 38 H 1.08994 * 109.66671 * 174.54556 * 9 5 4 39 39 H 1.08008 * 120.03819 * 359.97438 * 14 13 11 40 40 H 1.08007 * 119.83536 * 180.02562 * 15 14 13 41 41 H 1.08003 * 119.80241 * 180.27694 * 16 15 14 42 42 H 1.07995 * 119.96966 * 180.02562 * 17 16 15 43 43 H 0.96996 * 119.99901 * 179.97438 * 23 22 20 44 44 H 1.08995 * 109.58565 * 173.65066 * 28 10 9 45 45 H 1.09004 * 109.58806 * 293.92980 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0408 -0.7231 -1.2483 5 6 1.5030 -2.1558 -1.2660 6 1 0.4133 -2.1355 -1.2546 7 6 1.9873 -2.8675 -2.5308 8 8 1.3917 -4.1643 -2.6054 9 6 2.0189 -2.9055 -0.0283 10 7 1.6516 -2.1381 1.1696 11 6 0.9749 -2.7221 2.1783 12 8 0.6047 -2.0575 3.1269 13 6 0.6833 -4.1675 2.1315 14 6 1.5564 -5.0396 1.4774 15 6 1.2786 -6.3889 1.4377 16 6 0.1359 -6.8861 2.0435 17 6 -0.7362 -6.0365 2.6936 18 6 -0.4726 -4.6743 2.7437 19 8 -1.3279 -3.8382 3.3810 20 6 -2.4770 -4.3724 3.8412 21 1 -2.7211 -5.4008 3.6197 22 6 -3.3456 -3.6011 4.5990 23 7 -3.0481 -2.3488 4.8691 24 14 -4.9381 -4.3411 5.2360 25 1 -4.6299 -5.4998 6.1121 26 1 -5.6833 -3.3182 6.0129 27 1 -5.7669 -4.7937 4.0899 28 6 2.0414 -0.7238 1.2496 29 1 -0.3633 0.5125 0.8907 30 1 -0.3633 0.5151 -0.8892 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6987 -0.1958 -2.1389 33 1 3.1305 -0.7446 -1.2352 34 1 1.7018 -2.2856 -3.4071 35 1 3.0724 -2.9673 -2.4987 36 1 1.6542 -4.6735 -3.3844 37 1 3.1033 -3.0022 -0.0820 38 1 1.5636 -3.8947 0.0176 39 1 2.4482 -4.6569 1.0033 40 1 1.9550 -7.0621 0.9319 41 1 -0.0712 -7.9456 2.0111 42 1 -1.6246 -6.4316 3.1637 43 1 -3.6558 -1.8093 5.3987 44 1 1.6009 -0.2731 2.1389 45 1 3.1275 -0.6463 1.3005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362799315.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:09 Heat of formation + Delta-G solvation = -71.640955 kcal Electronic energy + Delta-G solvation = -28263.685687 eV Core-core repulsion = 24440.514809 eV Total energy + Delta-G solvation = -3823.170878 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.28989 -38.84296 -37.43140 -36.42844 -36.24250 -33.34890 -32.29933 -32.15750 -30.32689 -28.91177 -26.80833 -25.81284 -25.51041 -25.25750 -22.52753 -21.96136 -20.99465 -19.75187 -18.62403 -17.98931 -17.29346 -17.04498 -16.34532 -15.75012 -15.07147 -15.01844 -14.68933 -14.57013 -14.14538 -14.13416 -13.67062 -13.56407 -13.49643 -13.41900 -13.07111 -12.72539 -12.53417 -12.37847 -12.00151 -11.70884 -11.52753 -11.28030 -11.18397 -11.15058 -10.93611 -10.90346 -10.82773 -10.58557 -10.44086 -10.40492 -10.11777 -10.01704 -9.54003 -8.83636 -8.81380 -8.15070 -8.05713 -7.24905 -6.40422 -4.00605 1.81666 2.37134 3.14403 3.16442 3.18782 3.48825 3.73684 3.97250 4.08971 4.59524 4.75934 4.78006 4.91307 5.01248 5.12976 5.15955 5.19583 5.36595 5.39763 5.43406 5.51172 5.57089 5.60345 5.68200 5.72320 5.77080 5.91084 5.97879 6.03326 6.09261 6.14032 6.20767 6.22497 6.30455 6.35754 6.62480 6.63634 6.73426 6.97662 7.06612 7.12408 7.31497 7.33642 7.55463 7.75394 7.95275 8.06448 8.99737 9.08585 9.71942 10.74134 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.013282 B = 0.004721 C = 0.003973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2107.583348 B = 5929.110178 C = 7045.336383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.103 4.103 3 H 0.078 0.922 4 C -0.105 4.105 5 C -0.108 4.108 6 H 0.088 0.912 7 C 0.084 3.916 8 O -0.566 6.566 9 C 0.099 3.901 10 N -0.618 5.618 11 C 0.566 3.434 12 O -0.508 6.508 13 C -0.223 4.223 14 C -0.047 4.047 15 C -0.226 4.226 16 C -0.052 4.052 17 C -0.237 4.237 18 C 0.191 3.809 19 O -0.136 6.136 20 C -0.402 4.402 21 H 0.093 0.907 22 C 0.044 3.956 23 N -0.838 5.838 24 Si 0.940 3.060 25 H -0.269 1.269 26 H -0.277 1.277 27 H -0.269 1.269 28 C 0.117 3.883 29 H 0.058 0.942 30 H 0.048 0.952 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.044 0.956 35 H 0.044 0.956 36 H 0.376 0.624 37 H 0.058 0.942 38 H 0.119 0.881 39 H 0.125 0.875 40 H 0.109 0.891 41 H 0.110 0.890 42 H 0.131 0.869 43 H 0.271 0.729 44 H 0.093 0.907 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.879 -0.624 -14.724 18.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 H 0.096 0.904 4 C -0.143 4.143 5 C -0.128 4.128 6 H 0.107 0.893 7 C 0.006 3.994 8 O -0.371 6.371 9 C -0.024 4.024 10 N -0.354 5.354 11 C 0.357 3.643 12 O -0.382 6.382 13 C -0.228 4.228 14 C -0.066 4.066 15 C -0.245 4.245 16 C -0.071 4.071 17 C -0.257 4.257 18 C 0.132 3.868 19 O -0.035 6.035 20 C -0.478 4.478 21 H 0.110 0.890 22 C -0.163 4.163 23 N -0.470 5.470 24 Si 0.764 3.236 25 H -0.194 1.194 26 H -0.202 1.202 27 H -0.194 1.194 28 C -0.006 4.006 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.222 0.778 37 H 0.076 0.924 38 H 0.137 0.863 39 H 0.143 0.857 40 H 0.127 0.873 41 H 0.128 0.872 42 H 0.149 0.851 43 H 0.081 0.919 44 H 0.111 0.889 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 10.260 0.440 -13.383 16.869 hybrid contribution -0.462 -0.618 -0.400 0.869 sum 9.798 -0.178 -13.782 16.911 Atomic orbital electron populations 1.21829 0.94380 1.02832 1.01324 1.21448 0.97046 0.98923 0.94767 0.90376 1.21516 1.00187 0.94552 0.98048 1.21704 1.02665 0.94507 0.93903 0.89349 1.22159 0.96005 0.84106 0.97171 1.86584 1.72630 1.28638 1.49250 1.22474 0.98951 0.97620 0.83359 1.47884 1.58491 1.10522 1.18523 1.18243 0.76775 0.87389 0.81892 1.90861 1.49585 1.64588 1.33209 1.18770 0.99516 0.92702 1.11796 1.21097 0.97527 0.93188 0.94768 1.20468 1.00316 0.94868 1.08892 1.20888 0.93375 0.98362 0.94450 1.21140 1.03397 0.92966 1.08171 1.19234 0.88749 0.89172 0.89626 1.84120 1.26122 1.33741 1.59486 1.21391 0.93980 0.98606 1.33781 0.89009 1.25359 0.99424 0.95440 0.96074 1.70104 1.36294 1.06408 1.34225 0.85805 0.80030 0.78627 0.79097 1.19389 1.20203 1.19418 1.21508 0.98450 0.81681 0.98915 0.92314 0.93248 0.91885 0.91850 0.91865 0.93738 0.93743 0.77765 0.92416 0.86321 0.85709 0.87260 0.87242 0.85135 0.91875 0.88868 0.92377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 8.70 37.16 0.32 -1.86 16 2 C -0.10 -1.28 3.21 -90.50 -0.29 -1.57 16 3 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 4 C -0.11 -1.10 4.71 -26.69 -0.13 -1.22 16 5 C -0.11 -1.33 2.25 -90.27 -0.20 -1.53 16 6 H 0.09 1.32 6.34 -51.93 -0.33 0.99 16 7 C 0.08 0.80 6.43 37.16 0.24 1.04 16 8 O -0.57 -6.13 13.32 -35.23 -0.47 -6.60 16 9 C 0.10 1.40 3.88 -3.48 -0.01 1.39 16 10 N -0.62 -10.86 2.40 -173.73 -0.42 -11.28 16 11 C 0.57 13.02 7.35 -12.47 -0.09 12.93 16 12 O -0.51 -14.13 15.18 -13.76 -0.21 -14.34 16 13 C -0.22 -5.07 5.48 -104.81 -0.57 -5.64 16 14 C -0.05 -0.87 7.39 -39.20 -0.29 -1.16 16 15 C -0.23 -3.88 10.02 -39.61 -0.40 -4.28 16 16 C -0.05 -0.96 10.03 -39.54 -0.40 -1.35 16 17 C -0.24 -5.27 9.12 -39.44 -0.36 -5.63 16 18 C 0.19 4.89 6.63 -38.60 -0.26 4.63 16 19 O -0.14 -4.09 8.27 -18.25 -0.15 -4.24 16 20 C -0.40 -11.58 9.44 30.90 0.29 -11.29 16 21 H 0.09 2.41 5.30 -52.49 -0.28 2.13 16 22 C 0.04 1.25 5.49 -17.51 -0.10 1.15 16 23 N -0.84 -25.63 13.67 55.48 0.76 -24.88 16 24 Si 0.94 20.89 29.55 -169.99 -5.02 15.86 16 25 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 26 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 27 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 28 C 0.12 1.78 5.83 -3.71 -0.02 1.76 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 1.12 5.97 -51.93 -0.31 0.81 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.04 0.35 8.14 -51.92 -0.42 -0.07 16 36 H 0.38 2.22 9.12 45.56 0.42 2.63 16 37 H 0.06 0.69 8.04 -51.93 -0.42 0.28 16 38 H 0.12 1.89 3.88 -51.93 -0.20 1.69 16 39 H 0.13 1.91 5.42 -52.48 -0.28 1.63 16 40 H 0.11 1.52 8.06 -52.48 -0.42 1.10 16 41 H 0.11 1.64 8.06 -52.48 -0.42 1.22 16 42 H 0.13 2.85 5.71 -52.49 -0.30 2.55 16 43 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 44 H 0.09 1.67 6.99 -51.93 -0.36 1.30 16 45 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 356.03 15.07 5.37 5.37 Total: -1.00 -36.02 356.03 -7.84 -43.86 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -5.43 Total: 8.88 kcal Atomic # 6 Polarization: -10.37 SS G_CDS: -2.26 Total: -12.63 kcal Atomic # 7 Polarization: -36.50 SS G_CDS: 0.34 Total: -36.16 kcal Atomic # 8 Polarization: -24.35 SS G_CDS: -0.83 Total: -25.18 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -36.02 -7.84 -43.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362799315.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.783 kcal (2) G-P(sol) polarization free energy of solvation -36.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds