Wall clock time and date at job start Tue Mar 31 2020 13:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.52345 * 2 1 4 4 C 1.53035 * 109.49719 * 239.91858 * 2 1 3 5 5 C 1.53042 * 109.54075 * 301.41323 * 4 2 1 6 6 H 1.09001 * 109.49737 * 58.61822 * 5 4 2 7 7 C 1.52999 * 109.49982 * 178.68071 * 5 4 2 8 8 O 1.42898 * 109.47297 * 184.99642 * 7 5 4 9 9 C 1.53625 * 109.24225 * 298.51138 * 5 4 2 10 10 N 1.46930 * 108.54039 * 54.85144 * 9 5 4 11 11 C 1.34774 * 120.62607 * 126.37380 * 10 9 5 12 12 O 1.21596 * 119.99853 * 184.53488 * 11 10 9 13 13 C 1.47531 * 120.00189 * 4.53137 * 11 10 9 14 14 C 1.39667 * 120.19991 * 30.42800 * 13 11 10 15 15 C 1.37824 * 119.92245 * 179.97438 * 14 13 11 16 16 C 1.38565 * 120.32491 * 0.02562 * 15 14 13 17 17 C 1.38025 * 120.40372 * 359.97438 * 16 15 14 18 18 C 1.38834 * 120.06888 * 0.02562 * 17 16 15 19 19 O 1.35522 * 120.16158 * 179.97438 * 18 17 16 20 20 C 1.34816 * 116.99883 * 354.14810 * 19 18 17 21 21 H 1.07994 * 120.00030 * 354.62718 * 20 19 18 22 22 C 1.38700 * 119.99765 * 174.63006 * 20 19 18 23 23 N 1.31523 * 120.00097 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99822 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47002 * 60.00288 * 24 22 20 26 26 H 1.48501 * 109.47218 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47346 * 300.00251 * 24 22 20 28 28 C 1.46926 * 118.74058 * 306.09558 * 10 9 5 29 29 H 1.09000 * 109.47024 * 299.91509 * 1 2 3 30 30 H 1.08994 * 109.47297 * 59.91760 * 1 2 3 31 31 H 1.09006 * 109.46893 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46183 * 61.43320 * 4 2 1 33 33 H 1.08998 * 109.46091 * 181.40348 * 4 2 1 34 34 H 1.08994 * 109.47493 * 304.99931 * 7 5 4 35 35 H 1.09009 * 109.46925 * 64.99965 * 7 5 4 36 36 H 0.96699 * 114.00528 * 179.97438 * 8 7 5 37 37 H 1.08999 * 109.73696 * 295.11856 * 9 5 4 38 38 H 1.08994 * 109.66671 * 174.54556 * 9 5 4 39 39 H 1.08008 * 120.03819 * 359.97438 * 14 13 11 40 40 H 1.08007 * 119.83536 * 180.02562 * 15 14 13 41 41 H 1.08003 * 119.80241 * 180.27694 * 16 15 14 42 42 H 1.07995 * 119.96966 * 180.02562 * 17 16 15 43 43 H 0.96996 * 119.99901 * 179.97438 * 23 22 20 44 44 H 1.08995 * 109.58565 * 173.65066 * 28 10 9 45 45 H 1.09004 * 109.58806 * 293.92980 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0408 -0.7231 -1.2483 5 6 1.5030 -2.1558 -1.2660 6 1 0.4133 -2.1355 -1.2546 7 6 1.9873 -2.8675 -2.5308 8 8 1.3917 -4.1643 -2.6054 9 6 2.0189 -2.9055 -0.0283 10 7 1.6516 -2.1381 1.1696 11 6 0.9749 -2.7221 2.1783 12 8 0.6047 -2.0575 3.1269 13 6 0.6833 -4.1675 2.1315 14 6 1.5564 -5.0396 1.4774 15 6 1.2786 -6.3889 1.4377 16 6 0.1359 -6.8861 2.0435 17 6 -0.7362 -6.0365 2.6936 18 6 -0.4726 -4.6743 2.7437 19 8 -1.3279 -3.8382 3.3810 20 6 -2.4770 -4.3724 3.8412 21 1 -2.7211 -5.4008 3.6197 22 6 -3.3456 -3.6011 4.5990 23 7 -3.0481 -2.3488 4.8691 24 14 -4.9381 -4.3411 5.2360 25 1 -4.6299 -5.4998 6.1121 26 1 -5.6833 -3.3182 6.0129 27 1 -5.7669 -4.7937 4.0899 28 6 2.0414 -0.7238 1.2496 29 1 -0.3633 0.5125 0.8907 30 1 -0.3633 0.5151 -0.8892 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6987 -0.1958 -2.1389 33 1 3.1305 -0.7446 -1.2352 34 1 1.7018 -2.2856 -3.4071 35 1 3.0724 -2.9673 -2.4987 36 1 1.6542 -4.6735 -3.3844 37 1 3.1033 -3.0022 -0.0820 38 1 1.5636 -3.8947 0.0176 39 1 2.4482 -4.6569 1.0033 40 1 1.9550 -7.0621 0.9319 41 1 -0.0712 -7.9456 2.0111 42 1 -1.6246 -6.4316 3.1637 43 1 -3.6558 -1.8093 5.3987 44 1 1.6009 -0.2731 2.1389 45 1 3.1275 -0.6463 1.3005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362799315.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:08 Heat of formation + Delta-G solvation = -98.519057 kcal Electronic energy + Delta-G solvation = -28264.851209 eV Core-core repulsion = 24440.514809 eV Total energy + Delta-G solvation = -3824.336400 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.77666 -40.43062 -38.86930 -38.12928 -37.28701 -34.77745 -34.33652 -33.22787 -31.88678 -30.63294 -28.09820 -27.38023 -26.80331 -26.64432 -24.04679 -23.46613 -22.24851 -21.18784 -20.01898 -19.72542 -18.70726 -18.10792 -17.94910 -17.15685 -16.50243 -16.43478 -16.19243 -16.13280 -15.66763 -15.44453 -15.27671 -14.89417 -14.87144 -14.70305 -14.34572 -14.24534 -13.98273 -13.86106 -13.55798 -13.18711 -13.08130 -12.77224 -12.65014 -12.45280 -12.38716 -12.21156 -12.14232 -12.08214 -11.71147 -11.44740 -11.43391 -11.31720 -10.83779 -10.77984 -10.54034 -9.77027 -9.48320 -9.03158 -8.46992 -6.18347 0.16417 0.70713 1.29813 1.43315 1.48268 1.93644 2.14337 2.17499 2.83342 3.17753 3.35310 3.41852 3.68644 3.81085 3.88551 3.95667 3.98846 4.08812 4.24047 4.26243 4.42314 4.51433 4.56028 4.57921 4.63010 4.66731 4.71460 4.75262 4.78904 4.87309 4.93412 4.95073 5.01523 5.05620 5.10867 5.15837 5.23790 5.27717 5.47896 5.48415 5.57618 5.68404 5.75802 5.94245 6.16387 6.48994 6.92499 7.08395 7.39373 7.77840 8.74197 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.013282 B = 0.004721 C = 0.003973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2107.583348 B = 5929.110178 C = 7045.336383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.096 4.096 3 H 0.109 0.891 4 C -0.096 4.096 5 C -0.109 4.109 6 H 0.048 0.952 7 C 0.089 3.911 8 O -0.595 6.595 9 C 0.091 3.909 10 N -0.607 5.607 11 C 0.554 3.446 12 O -0.579 6.579 13 C -0.242 4.242 14 C -0.039 4.039 15 C -0.197 4.197 16 C -0.042 4.042 17 C -0.256 4.256 18 C 0.148 3.852 19 O -0.201 6.201 20 C -0.426 4.426 21 H 0.106 0.894 22 C -0.024 4.024 23 N -0.910 5.910 24 Si 1.023 2.977 25 H -0.253 1.253 26 H -0.272 1.272 27 H -0.254 1.254 28 C 0.109 3.891 29 H 0.026 0.974 30 H 0.075 0.925 31 H 0.024 0.976 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.062 0.938 35 H 0.075 0.925 36 H 0.397 0.603 37 H 0.099 0.901 38 H 0.102 0.898 39 H 0.164 0.836 40 H 0.165 0.835 41 H 0.156 0.844 42 H 0.123 0.877 43 H 0.271 0.729 44 H 0.050 0.950 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.150 -3.145 -18.627 23.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.115 4.115 3 H 0.127 0.873 4 C -0.134 4.134 5 C -0.128 4.128 6 H 0.067 0.933 7 C 0.011 3.989 8 O -0.404 6.404 9 C -0.030 4.030 10 N -0.340 5.340 11 C 0.345 3.655 12 O -0.459 6.459 13 C -0.247 4.247 14 C -0.057 4.057 15 C -0.215 4.215 16 C -0.060 4.060 17 C -0.276 4.276 18 C 0.093 3.907 19 O -0.104 6.104 20 C -0.502 4.502 21 H 0.123 0.877 22 C -0.222 4.222 23 N -0.547 5.547 24 Si 0.841 3.159 25 H -0.177 1.177 26 H -0.197 1.197 27 H -0.178 1.178 28 C -0.013 4.013 29 H 0.045 0.955 30 H 0.094 0.906 31 H 0.043 0.957 32 H 0.104 0.896 33 H 0.114 0.886 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.246 0.754 37 H 0.117 0.883 38 H 0.119 0.881 39 H 0.181 0.819 40 H 0.183 0.817 41 H 0.173 0.827 42 H 0.141 0.859 43 H 0.080 0.920 44 H 0.069 0.931 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 13.613 -2.140 -17.400 22.196 hybrid contribution -1.140 -0.001 0.522 1.254 sum 12.473 -2.141 -16.878 21.096 Atomic orbital electron populations 1.21802 0.97108 1.00224 1.00971 1.21475 0.94548 1.00712 0.94732 0.87287 1.21504 1.01934 0.92815 0.97118 1.21686 1.00431 0.96212 0.94518 0.93331 1.22152 0.97378 0.83632 0.95753 1.86527 1.73472 1.29478 1.50909 1.22753 1.01093 0.96651 0.82484 1.47932 1.56304 1.11670 1.18077 1.18579 0.76841 0.87787 0.82305 1.90822 1.52688 1.65970 1.36379 1.19236 0.99637 0.93598 1.12197 1.21568 0.97561 0.93354 0.93217 1.21178 0.99655 0.94832 1.05815 1.21424 0.92369 1.00036 0.92149 1.21296 1.04541 0.92168 1.09567 1.20018 0.89745 0.90731 0.90176 1.84115 1.27617 1.35817 1.62859 1.21954 0.94714 0.99349 1.34145 0.87713 1.26788 1.03658 0.95732 0.96041 1.70309 1.38540 1.08741 1.37063 0.84609 0.74459 0.77968 0.78826 1.17697 1.19693 1.17792 1.21758 1.00286 0.80373 0.98874 0.95524 0.90649 0.95652 0.89568 0.88583 0.92000 0.90730 0.75352 0.88329 0.88066 0.81926 0.81716 0.82677 0.85888 0.92017 0.93094 0.88633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.55 8.70 71.98 0.63 -3.92 16 2 C -0.10 -2.26 3.21 -10.72 -0.03 -2.30 16 3 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 4 C -0.10 -1.60 4.71 30.62 0.14 -1.46 16 5 C -0.11 -2.37 2.25 -10.57 -0.02 -2.40 16 6 H 0.05 1.46 6.34 -2.39 -0.02 1.44 16 7 C 0.09 1.27 6.43 71.98 0.46 1.73 16 8 O -0.60 -10.67 13.32 -148.98 -1.98 -12.65 16 9 C 0.09 2.35 3.88 86.51 0.34 2.68 16 10 N -0.61 -21.60 2.40 -821.82 -1.98 -23.58 16 11 C 0.55 27.30 7.35 86.69 0.64 27.93 16 12 O -0.58 -35.85 15.18 14.19 0.22 -35.63 16 13 C -0.24 -11.42 5.48 -19.99 -0.11 -11.53 16 14 C -0.04 -1.33 7.39 22.52 0.17 -1.16 16 15 C -0.20 -5.76 10.02 22.25 0.22 -5.53 16 16 C -0.04 -1.39 10.03 22.30 0.22 -1.17 16 17 C -0.26 -11.62 9.12 22.36 0.20 -11.42 16 18 C 0.15 8.07 6.63 22.91 0.15 8.22 16 19 O -0.20 -13.35 8.27 -1.88 -0.02 -13.37 16 20 C -0.43 -26.71 9.44 67.93 0.64 -26.07 16 21 H 0.11 5.90 5.30 -2.91 -0.02 5.89 16 22 C -0.02 -1.44 5.49 84.85 0.47 -0.98 16 23 N -0.91 -61.26 13.67 21.62 0.30 -60.97 16 24 Si 1.02 45.56 29.55 68.60 2.03 47.59 16 25 H -0.25 -10.43 7.11 99.48 0.71 -9.72 16 26 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 27 H -0.25 -10.48 7.11 99.48 0.71 -9.78 16 28 C 0.11 3.33 5.83 86.36 0.50 3.84 16 29 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.02 0.97 5.97 -2.38 -0.01 0.95 16 32 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 33 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 36 H 0.40 3.05 9.12 -74.06 -0.68 2.38 16 37 H 0.10 1.80 8.04 -2.39 -0.02 1.78 16 38 H 0.10 2.97 3.88 -2.39 -0.01 2.96 16 39 H 0.16 4.25 5.42 -2.91 -0.02 4.23 16 40 H 0.17 3.21 8.06 -2.91 -0.02 3.18 16 41 H 0.16 3.80 8.06 -2.91 -0.02 3.78 16 42 H 0.12 5.61 5.71 -2.91 -0.02 5.60 16 43 H 0.27 16.70 8.31 -92.71 -0.77 15.93 16 44 H 0.05 2.00 6.99 -2.39 -0.02 1.98 16 45 H 0.10 2.22 8.14 -2.38 -0.02 2.20 16 Total: -1.00 -95.52 356.03 3.53 -91.99 By element: Atomic # 1 Polarization: 29.78 SS G_CDS: 0.35 Total: 30.13 kcal Atomic # 6 Polarization: -28.13 SS G_CDS: 4.62 Total: -23.51 kcal Atomic # 7 Polarization: -82.87 SS G_CDS: -1.68 Total: -84.55 kcal Atomic # 8 Polarization: -59.87 SS G_CDS: -1.78 Total: -61.65 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -95.52 3.53 -91.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362799315.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.527 kcal (2) G-P(sol) polarization free energy of solvation -95.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds