Wall clock time and date at job start Tue Mar 31 2020 13:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.98480 * 2 1 4 4 O 1.43744 * 109.87837 * 238.92228 * 2 1 3 5 5 C 1.44384 * 106.97292 * 214.05900 * 4 2 1 6 6 C 1.54996 * 103.49161 * 40.05728 * 5 4 2 7 7 C 1.54097 * 109.88161 * 121.08525 * 2 1 3 8 8 O 1.42904 * 110.48775 * 240.26634 * 7 2 1 9 9 C 1.52996 * 110.48699 * 2.77777 * 7 2 1 10 10 N 1.46503 * 109.47119 * 179.97438 * 9 7 2 11 11 C 1.34776 * 119.99912 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00073 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.99620 * 180.02562 * 11 10 9 14 14 H 1.08999 * 109.47219 * 299.99983 * 13 11 10 15 15 C 1.50697 * 109.47355 * 60.00195 * 13 11 10 16 16 H 1.08001 * 120.00296 * 235.34312 * 15 13 11 17 17 C 1.37885 * 119.99791 * 55.34410 * 15 13 11 18 18 N 1.31510 * 119.99854 * 1.97853 * 17 15 13 19 19 Si 1.86801 * 119.99950 * 181.97774 * 17 15 13 20 20 H 1.48497 * 109.47060 * 0.02562 * 19 17 15 21 21 H 1.48495 * 109.46991 * 120.00009 * 19 17 15 22 22 H 1.48496 * 109.47131 * 240.00087 * 19 17 15 23 23 C 1.50703 * 109.46803 * 180.02562 * 13 11 10 24 24 C 1.38235 * 119.99800 * 226.93839 * 23 13 11 25 25 C 1.38242 * 119.99666 * 179.74298 * 24 23 13 26 26 C 1.38230 * 119.99743 * 0.55793 * 25 24 23 27 27 C 1.38233 * 120.00366 * 359.70071 * 26 25 24 28 28 C 1.38230 * 119.99847 * 47.22142 * 23 13 11 29 29 H 1.09001 * 109.46755 * 179.62795 * 1 2 3 30 30 H 1.08999 * 109.47178 * 299.62653 * 1 2 3 31 31 H 1.09001 * 109.47513 * 59.63048 * 1 2 3 32 32 H 1.08991 * 110.61937 * 158.56142 * 5 4 2 33 33 H 1.08999 * 110.61725 * 281.56123 * 5 4 2 34 34 H 1.08993 * 110.90838 * 204.78355 * 6 5 4 35 35 H 1.09000 * 110.93661 * 81.18719 * 6 5 4 36 36 H 0.96698 * 113.99696 * 179.97438 * 8 7 2 37 37 H 1.08998 * 109.47671 * 300.00118 * 9 7 2 38 38 H 1.09002 * 109.47266 * 60.00301 * 9 7 2 39 39 H 0.97000 * 119.99821 * 0.02562 * 10 9 7 40 40 H 0.97005 * 119.99975 * 179.97438 * 18 17 15 41 41 H 1.07996 * 120.00384 * 0.02562 * 24 23 13 42 42 H 1.07997 * 119.99745 * 180.27922 * 25 24 23 43 43 H 1.08005 * 120.00004 * 179.71784 * 26 25 24 44 44 H 1.08001 * 120.00060 * 179.97438 * 27 26 25 45 45 H 1.07997 * 120.00382 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9025 1.0244 0.0000 4 8 2.0188 -0.6978 -1.1578 5 6 3.2380 -1.3640 -0.7648 6 6 2.9197 -1.8914 0.6575 7 6 2.0541 -0.7482 1.2410 8 8 2.8485 0.1210 2.0506 9 6 0.8900 -1.3190 2.0533 10 7 1.4125 -2.0251 3.2258 11 6 0.5637 -2.6125 4.0924 12 8 -0.6326 -2.5569 3.9014 13 6 1.1013 -3.3383 5.2987 14 1 1.7506 -4.1514 4.9741 15 6 1.8877 -2.3782 6.1536 16 1 2.9118 -2.6014 6.4142 17 6 1.2999 -1.2147 6.6029 18 7 0.0412 -0.9615 6.3181 19 14 2.2913 0.0017 7.6162 20 1 3.6724 -0.5134 7.7957 21 1 2.3385 1.3089 6.9132 22 1 1.6512 0.1770 8.9446 23 6 -0.0453 -3.9007 6.0988 24 6 -0.0820 -3.7276 7.4698 25 6 -1.1365 -4.2389 8.2030 26 6 -2.1483 -4.9332 7.5667 27 6 -2.1090 -5.1108 6.1964 28 6 -1.0574 -4.5946 5.4624 29 1 -0.3633 -1.0277 -0.0067 30 1 -0.3633 0.5080 0.8933 31 1 -0.3634 0.5196 -0.8866 32 1 3.4586 -2.1905 -1.4402 33 1 4.0685 -0.6587 -0.7357 34 1 3.8333 -2.0222 1.2373 35 1 2.3543 -2.8221 0.6103 36 1 3.2040 -0.2983 2.8461 37 1 0.2403 -0.5063 2.3780 38 1 0.3215 -2.0137 1.4349 39 1 2.3694 -2.0693 3.3787 40 1 -0.3725 -0.1431 6.6346 41 1 0.7109 -3.1891 7.9675 42 1 -1.1674 -4.0998 9.2735 43 1 -2.9699 -5.3366 8.1401 44 1 -2.8993 -5.6536 5.6993 45 1 -1.0266 -4.7334 4.3918 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001417729809.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:24:16 Heat of formation + Delta-G solvation = -103.028680 kcal Electronic energy + Delta-G solvation = -28130.190608 eV Core-core repulsion = 24305.658656 eV Total energy + Delta-G solvation = -3824.531952 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.36321 -38.88957 -37.46628 -36.28830 -33.68361 -33.49137 -31.96395 -30.98094 -30.82005 -29.69002 -27.68109 -26.16983 -24.74374 -23.69801 -22.49503 -21.29556 -20.65129 -19.73762 -19.30981 -17.39552 -16.93896 -16.20027 -16.04389 -15.51084 -15.39109 -15.15492 -14.90668 -14.68722 -14.39320 -13.91881 -13.63290 -13.37417 -13.17555 -12.87810 -12.47680 -12.44349 -12.27192 -12.20696 -12.17271 -11.89255 -11.57151 -11.44463 -11.31229 -11.21591 -11.02769 -10.77045 -10.55451 -10.47754 -10.07042 -9.92595 -9.77015 -9.69080 -9.40292 -8.76504 -8.36920 -8.10870 -7.70864 -7.42053 -6.18251 -4.35478 2.52964 2.59699 3.16126 3.26962 3.27801 3.73205 3.98488 3.98767 4.17322 4.31360 4.48109 4.65213 4.89530 5.01562 5.05255 5.09252 5.21753 5.31884 5.45947 5.53249 5.64046 5.79680 5.84263 5.84553 5.88880 5.95146 6.01814 6.05899 6.14480 6.28278 6.36757 6.51863 6.65757 6.75451 6.77055 6.86209 7.11223 7.19514 7.35632 7.53722 7.62316 7.64308 7.66338 7.76029 8.13830 8.24676 8.50248 8.72895 9.31874 9.61296 10.81907 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.014466 B = 0.004542 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.110342 B = 6162.944557 C = 7329.987900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.091 3.909 3 H 0.081 0.919 4 O -0.372 6.372 5 C 0.050 3.950 6 C -0.182 4.182 7 C 0.095 3.905 8 O -0.550 6.550 9 C 0.109 3.891 10 N -0.738 5.738 11 C 0.552 3.448 12 O -0.544 6.544 13 C 0.057 3.943 14 H 0.056 0.944 15 C -0.543 4.543 16 H 0.067 0.933 17 C 0.075 3.925 18 N -0.839 5.839 19 Si 0.885 3.115 20 H -0.271 1.271 21 H -0.283 1.283 22 H -0.282 1.282 23 C -0.014 4.014 24 C -0.065 4.065 25 C -0.147 4.147 26 C -0.145 4.145 27 C -0.144 4.144 28 C -0.101 4.101 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.093 0.907 33 H 0.062 0.938 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.384 0.616 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.390 0.610 40 H 0.265 0.735 41 H 0.127 0.873 42 H 0.101 0.899 43 H 0.100 0.900 44 H 0.101 0.899 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.859 -2.186 -8.292 9.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.033 3.967 3 H 0.099 0.901 4 O -0.292 6.292 5 C -0.026 4.026 6 C -0.219 4.219 7 C 0.053 3.947 8 O -0.357 6.357 9 C -0.016 4.016 10 N -0.392 5.392 11 C 0.342 3.658 12 O -0.419 6.419 13 C 0.035 3.965 14 H 0.074 0.926 15 C -0.581 4.581 16 H 0.085 0.915 17 C -0.133 4.133 18 N -0.471 5.471 19 Si 0.712 3.288 20 H -0.195 1.195 21 H -0.208 1.208 22 H -0.208 1.208 23 C -0.015 4.015 24 C -0.083 4.083 25 C -0.166 4.166 26 C -0.163 4.163 27 C -0.162 4.162 28 C -0.119 4.119 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.111 0.889 33 H 0.081 0.919 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.234 0.766 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.223 0.777 40 H 0.075 0.925 41 H 0.145 0.855 42 H 0.120 0.880 43 H 0.118 0.882 44 H 0.119 0.881 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 3.536 -1.576 -9.079 9.870 hybrid contribution 1.011 0.645 1.387 1.833 sum 4.547 -0.932 -7.693 8.984 Atomic orbital electron populations 1.22051 0.92740 1.03592 1.02903 1.22535 0.95305 0.96105 0.82778 0.90106 1.88901 1.39757 1.67848 1.32661 1.23481 0.87798 0.96323 0.95035 1.23831 1.01213 0.99448 0.97455 1.22771 0.90775 0.89509 0.91639 1.86487 1.69504 1.40529 1.39210 1.21869 0.95034 0.96956 0.87727 1.45789 1.09930 1.58176 1.25349 1.21032 0.85771 0.77379 0.81667 1.90547 1.16010 1.60836 1.74556 1.17883 0.92867 0.94756 0.90946 0.92617 1.20720 0.98815 1.04368 1.34159 0.91456 1.25058 0.94698 0.97898 0.95688 1.70076 1.10282 1.24701 1.42087 0.86633 0.80452 0.81402 0.80289 1.19516 1.20846 1.20823 1.19800 0.95176 0.92697 0.93856 1.21140 0.97293 0.95738 0.94142 1.20993 0.96016 1.00836 0.98724 1.20774 0.98829 1.01985 0.94688 1.20822 0.98764 1.02530 0.94109 1.20965 0.94493 0.97718 0.98724 0.91158 0.90324 0.91700 0.88929 0.91945 0.89376 0.89266 0.76601 0.90993 0.91370 0.77656 0.92509 0.85474 0.88048 0.88210 0.88110 0.87565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.99 8.40 37.16 0.31 -1.68 16 2 C 0.09 1.22 3.88 -26.16 -0.10 1.12 16 3 H 0.08 1.11 7.97 -51.93 -0.41 0.69 16 4 O -0.37 -5.01 11.19 -35.23 -0.39 -5.40 16 5 C 0.05 0.54 7.72 38.21 0.29 0.84 16 6 C -0.18 -2.05 6.08 -24.72 -0.15 -2.20 16 7 C 0.09 1.29 1.07 -89.09 -0.10 1.19 16 8 O -0.55 -7.96 12.98 -35.23 -0.46 -8.42 16 9 C 0.11 1.79 3.53 -4.04 -0.01 1.77 16 10 N -0.74 -13.33 5.06 -60.29 -0.30 -13.64 16 11 C 0.55 12.36 5.45 -10.99 -0.06 12.30 16 12 O -0.54 -13.97 13.96 5.56 0.08 -13.89 16 13 C 0.06 1.27 2.77 -94.07 -0.26 1.01 16 14 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 15 C -0.54 -12.59 7.11 -34.44 -0.24 -12.83 16 16 H 0.07 1.52 7.81 -52.49 -0.41 1.11 16 17 C 0.07 1.82 4.01 -17.82 -0.07 1.75 16 18 N -0.84 -22.27 10.90 55.43 0.60 -21.66 16 19 Si 0.89 19.23 29.54 -169.99 -5.02 14.21 16 20 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 21 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 23 C -0.01 -0.33 4.51 -104.62 -0.47 -0.80 16 24 C -0.07 -1.50 8.21 -39.58 -0.32 -1.82 16 25 C -0.15 -3.05 10.05 -39.58 -0.40 -3.45 16 26 C -0.14 -2.84 10.05 -39.59 -0.40 -3.23 16 27 C -0.14 -2.92 10.05 -39.58 -0.40 -3.32 16 28 C -0.10 -2.25 8.21 -39.58 -0.33 -2.57 16 29 H 0.07 0.92 6.67 -51.93 -0.35 0.57 16 30 H 0.08 1.04 6.87 -51.93 -0.36 0.68 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.09 0.87 8.08 -51.93 -0.42 0.45 16 35 H 0.09 1.03 7.85 -51.93 -0.41 0.62 16 36 H 0.38 4.96 7.76 45.56 0.35 5.31 16 37 H 0.07 1.37 6.74 -51.93 -0.35 1.02 16 38 H 0.07 1.13 6.78 -51.93 -0.35 0.78 16 39 H 0.39 6.18 7.12 -40.82 -0.29 5.89 16 40 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 41 H 0.13 3.01 6.04 -52.49 -0.32 2.69 16 42 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 43 H 0.10 1.66 8.06 -52.48 -0.42 1.23 16 44 H 0.10 1.77 8.06 -52.49 -0.42 1.35 16 45 H 0.11 2.34 7.01 -52.49 -0.37 1.97 16 LS Contribution 357.80 15.07 5.39 5.39 Total: -1.00 -29.77 357.80 -8.58 -38.35 By element: Atomic # 1 Polarization: 22.76 SS G_CDS: -5.77 Total: 16.99 kcal Atomic # 6 Polarization: -9.21 SS G_CDS: -2.71 Total: -11.92 kcal Atomic # 7 Polarization: -35.60 SS G_CDS: 0.30 Total: -35.30 kcal Atomic # 8 Polarization: -26.94 SS G_CDS: -0.77 Total: -27.72 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.02 Total: 14.21 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.77 -8.58 -38.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417729809.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.676 kcal (2) G-P(sol) polarization free energy of solvation -29.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds