Wall clock time and date at job start Tue Mar 31 2020 13:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.98480 * 2 1 4 4 O 1.43744 * 109.87837 * 238.92228 * 2 1 3 5 5 C 1.44384 * 106.97292 * 214.05900 * 4 2 1 6 6 C 1.54996 * 103.49161 * 40.05728 * 5 4 2 7 7 C 1.54097 * 109.88161 * 121.08525 * 2 1 3 8 8 O 1.42904 * 110.48775 * 240.26634 * 7 2 1 9 9 C 1.52996 * 110.48699 * 2.77777 * 7 2 1 10 10 N 1.46503 * 109.47119 * 179.97438 * 9 7 2 11 11 C 1.34776 * 119.99912 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00073 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.99620 * 180.02562 * 11 10 9 14 14 H 1.08999 * 109.47219 * 299.99983 * 13 11 10 15 15 C 1.50697 * 109.47355 * 60.00195 * 13 11 10 16 16 H 1.08001 * 120.00296 * 235.34312 * 15 13 11 17 17 C 1.37885 * 119.99791 * 55.34410 * 15 13 11 18 18 N 1.31510 * 119.99854 * 1.97853 * 17 15 13 19 19 Si 1.86801 * 119.99950 * 181.97774 * 17 15 13 20 20 H 1.48497 * 109.47060 * 0.02562 * 19 17 15 21 21 H 1.48495 * 109.46991 * 120.00009 * 19 17 15 22 22 H 1.48496 * 109.47131 * 240.00087 * 19 17 15 23 23 C 1.50703 * 109.46803 * 180.02562 * 13 11 10 24 24 C 1.38235 * 119.99800 * 226.93839 * 23 13 11 25 25 C 1.38242 * 119.99666 * 179.74298 * 24 23 13 26 26 C 1.38230 * 119.99743 * 0.55793 * 25 24 23 27 27 C 1.38233 * 120.00366 * 359.70071 * 26 25 24 28 28 C 1.38230 * 119.99847 * 47.22142 * 23 13 11 29 29 H 1.09001 * 109.46755 * 179.62795 * 1 2 3 30 30 H 1.08999 * 109.47178 * 299.62653 * 1 2 3 31 31 H 1.09001 * 109.47513 * 59.63048 * 1 2 3 32 32 H 1.08991 * 110.61937 * 158.56142 * 5 4 2 33 33 H 1.08999 * 110.61725 * 281.56123 * 5 4 2 34 34 H 1.08993 * 110.90838 * 204.78355 * 6 5 4 35 35 H 1.09000 * 110.93661 * 81.18719 * 6 5 4 36 36 H 0.96698 * 113.99696 * 179.97438 * 8 7 2 37 37 H 1.08998 * 109.47671 * 300.00118 * 9 7 2 38 38 H 1.09002 * 109.47266 * 60.00301 * 9 7 2 39 39 H 0.97000 * 119.99821 * 0.02562 * 10 9 7 40 40 H 0.97005 * 119.99975 * 179.97438 * 18 17 15 41 41 H 1.07996 * 120.00384 * 0.02562 * 24 23 13 42 42 H 1.07997 * 119.99745 * 180.27922 * 25 24 23 43 43 H 1.08005 * 120.00004 * 179.71784 * 26 25 24 44 44 H 1.08001 * 120.00060 * 179.97438 * 27 26 25 45 45 H 1.07997 * 120.00382 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9025 1.0244 0.0000 4 8 2.0188 -0.6978 -1.1578 5 6 3.2380 -1.3640 -0.7648 6 6 2.9197 -1.8914 0.6575 7 6 2.0541 -0.7482 1.2410 8 8 2.8485 0.1210 2.0506 9 6 0.8900 -1.3190 2.0533 10 7 1.4125 -2.0251 3.2258 11 6 0.5637 -2.6125 4.0924 12 8 -0.6326 -2.5569 3.9014 13 6 1.1013 -3.3383 5.2987 14 1 1.7506 -4.1514 4.9741 15 6 1.8877 -2.3782 6.1536 16 1 2.9118 -2.6014 6.4142 17 6 1.2999 -1.2147 6.6029 18 7 0.0412 -0.9615 6.3181 19 14 2.2913 0.0017 7.6162 20 1 3.6724 -0.5134 7.7957 21 1 2.3385 1.3089 6.9132 22 1 1.6512 0.1770 8.9446 23 6 -0.0453 -3.9007 6.0988 24 6 -0.0820 -3.7276 7.4698 25 6 -1.1365 -4.2389 8.2030 26 6 -2.1483 -4.9332 7.5667 27 6 -2.1090 -5.1108 6.1964 28 6 -1.0574 -4.5946 5.4624 29 1 -0.3633 -1.0277 -0.0067 30 1 -0.3633 0.5080 0.8933 31 1 -0.3634 0.5196 -0.8866 32 1 3.4586 -2.1905 -1.4402 33 1 4.0685 -0.6587 -0.7357 34 1 3.8333 -2.0222 1.2373 35 1 2.3543 -2.8221 0.6103 36 1 3.2040 -0.2983 2.8461 37 1 0.2403 -0.5063 2.3780 38 1 0.3215 -2.0137 1.4349 39 1 2.3694 -2.0693 3.3787 40 1 -0.3725 -0.1431 6.6346 41 1 0.7109 -3.1891 7.9675 42 1 -1.1674 -4.0998 9.2735 43 1 -2.9699 -5.3366 8.1401 44 1 -2.8993 -5.6536 5.6993 45 1 -1.0266 -4.7334 4.3918 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001417729809.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:24:15 Heat of formation + Delta-G solvation = -123.521154 kcal Electronic energy + Delta-G solvation = -28131.079228 eV Core-core repulsion = 24305.658656 eV Total energy + Delta-G solvation = -3825.420572 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.51128 -40.51578 -39.05615 -37.49221 -35.47441 -34.97370 -33.12447 -32.61042 -31.99327 -31.34128 -29.29833 -27.51295 -26.04641 -25.32260 -23.46121 -22.95588 -22.25129 -21.03801 -20.86686 -18.82792 -18.39682 -17.63281 -17.15628 -17.00768 -16.83273 -16.48619 -16.38562 -16.13366 -15.89714 -15.41173 -15.27864 -14.74901 -14.46729 -14.29190 -13.94629 -13.87426 -13.82336 -13.58549 -13.48793 -13.16025 -12.99406 -12.81477 -12.76482 -12.58237 -12.46802 -12.27512 -12.19995 -11.75679 -11.61535 -11.40448 -11.15667 -11.04462 -10.75579 -10.64363 -10.16513 -9.70825 -9.37100 -9.08983 -8.06174 -6.25950 0.88682 0.94035 1.41309 1.48644 1.55467 2.30831 2.44442 2.65142 2.78632 2.94383 3.21835 3.34703 3.43858 3.52392 3.86673 4.08605 4.20973 4.26471 4.34221 4.36389 4.44554 4.50024 4.53794 4.58373 4.66877 4.69109 4.79682 4.82338 4.95366 4.96991 5.00204 5.02117 5.10336 5.17474 5.18930 5.46576 5.55546 5.71642 5.76428 5.85508 5.90745 5.96095 5.99408 6.43478 6.54182 6.57699 6.76825 7.04164 7.43649 7.91321 8.92534 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.014466 B = 0.004542 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.110342 B = 6162.944557 C = 7329.987900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.091 3.909 3 H 0.079 0.921 4 O -0.385 6.385 5 C 0.048 3.952 6 C -0.176 4.176 7 C 0.099 3.901 8 O -0.559 6.559 9 C 0.117 3.883 10 N -0.724 5.724 11 C 0.551 3.449 12 O -0.582 6.582 13 C 0.047 3.953 14 H 0.071 0.929 15 C -0.531 4.531 16 H 0.075 0.925 17 C 0.041 3.959 18 N -0.873 5.873 19 Si 0.938 3.062 20 H -0.256 1.256 21 H -0.291 1.291 22 H -0.292 1.292 23 C -0.035 4.035 24 C -0.087 4.087 25 C -0.153 4.153 26 C -0.142 4.142 27 C -0.147 4.147 28 C -0.118 4.118 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.116 0.884 33 H 0.071 0.929 34 H 0.107 0.893 35 H 0.088 0.912 36 H 0.390 0.610 37 H 0.042 0.958 38 H 0.067 0.933 39 H 0.402 0.598 40 H 0.254 0.746 41 H 0.113 0.887 42 H 0.125 0.875 43 H 0.137 0.863 44 H 0.128 0.872 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.871 -2.957 -8.435 10.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.033 3.967 3 H 0.097 0.903 4 O -0.304 6.304 5 C -0.028 4.028 6 C -0.214 4.214 7 C 0.058 3.942 8 O -0.367 6.367 9 C -0.008 4.008 10 N -0.378 5.378 11 C 0.340 3.660 12 O -0.461 6.461 13 C 0.026 3.974 14 H 0.089 0.911 15 C -0.569 4.569 16 H 0.093 0.907 17 C -0.163 4.163 18 N -0.507 5.507 19 Si 0.765 3.235 20 H -0.179 1.179 21 H -0.218 1.218 22 H -0.219 1.219 23 C -0.036 4.036 24 C -0.105 4.105 25 C -0.171 4.171 26 C -0.160 4.160 27 C -0.165 4.165 28 C -0.137 4.137 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.134 0.866 33 H 0.089 0.911 34 H 0.125 0.875 35 H 0.106 0.894 36 H 0.241 0.759 37 H 0.060 0.940 38 H 0.085 0.915 39 H 0.238 0.762 40 H 0.063 0.937 41 H 0.131 0.869 42 H 0.143 0.857 43 H 0.154 0.846 44 H 0.146 0.854 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 4.616 -2.357 -9.232 10.587 hybrid contribution 0.694 0.824 1.424 1.786 sum 5.311 -1.533 -7.808 9.566 Atomic orbital electron populations 1.22010 0.92713 1.03262 1.03075 1.22500 0.95432 0.95994 0.82812 0.90348 1.88890 1.40920 1.68060 1.32560 1.23695 0.87036 0.97087 0.95006 1.23814 1.01399 0.98178 0.97970 1.22721 0.90060 0.90339 0.91101 1.86482 1.69431 1.41171 1.39664 1.21833 0.95969 0.95774 0.87189 1.45599 1.10189 1.56986 1.25021 1.21034 0.85523 0.77393 0.82041 1.90518 1.17663 1.62365 1.75583 1.18014 0.93165 0.95163 0.91066 0.91111 1.20924 0.98914 1.03932 1.33125 0.90665 1.25557 0.95022 0.99273 0.96477 1.70243 1.11895 1.24653 1.43908 0.85797 0.79974 0.79299 0.78395 1.17923 1.21759 1.21862 1.19944 0.95944 0.93463 0.94248 1.21133 0.98143 0.96951 0.94303 1.21315 0.95518 1.00262 0.99991 1.21169 0.99261 1.00935 0.94664 1.21193 0.98648 1.01946 0.94705 1.21042 0.95346 0.98608 0.98667 0.91728 0.91420 0.90262 0.86594 0.91059 0.87475 0.89381 0.75949 0.93959 0.91516 0.76233 0.93681 0.86949 0.85721 0.84564 0.85363 0.88221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.94 8.40 71.98 0.60 -3.33 16 2 C 0.09 2.38 3.88 30.97 0.12 2.50 16 3 H 0.08 2.10 7.97 -2.39 -0.02 2.08 16 4 O -0.38 -9.73 11.19 -148.98 -1.67 -11.40 16 5 C 0.05 0.91 7.72 72.66 0.56 1.47 16 6 C -0.18 -3.61 6.08 31.90 0.19 -3.42 16 7 C 0.10 2.63 1.07 -9.81 -0.01 2.62 16 8 O -0.56 -15.63 12.98 -148.98 -1.93 -17.56 16 9 C 0.12 3.89 3.53 86.38 0.30 4.19 16 10 N -0.72 -26.15 5.06 -463.06 -2.34 -28.49 16 11 C 0.55 24.97 5.45 87.66 0.48 25.45 16 12 O -0.58 -30.73 13.96 -3.03 -0.04 -30.77 16 13 C 0.05 2.12 2.77 -13.03 -0.04 2.08 16 14 H 0.07 2.88 8.14 -2.39 -0.02 2.86 16 15 C -0.53 -24.41 7.11 25.60 0.18 -24.23 16 16 H 0.08 3.29 7.81 -2.91 -0.02 3.26 16 17 C 0.04 2.01 4.01 84.66 0.34 2.35 16 18 N -0.87 -47.22 10.90 21.45 0.23 -46.99 16 19 Si 0.94 39.52 29.54 68.60 2.03 41.54 16 20 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 21 H -0.29 -12.59 7.11 99.48 0.71 -11.89 16 22 H -0.29 -12.70 7.11 99.48 0.71 -12.00 16 23 C -0.04 -1.64 4.51 -19.87 -0.09 -1.73 16 24 C -0.09 -4.00 8.21 22.27 0.18 -3.82 16 25 C -0.15 -6.13 10.05 22.27 0.22 -5.91 16 26 C -0.14 -5.26 10.05 22.27 0.22 -5.04 16 27 C -0.15 -5.75 10.05 22.27 0.22 -5.52 16 28 C -0.12 -5.28 8.21 22.27 0.18 -5.10 16 29 H 0.06 1.71 6.67 -2.39 -0.02 1.69 16 30 H 0.07 1.87 6.87 -2.39 -0.02 1.85 16 31 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.11 1.80 8.08 -2.39 -0.02 1.78 16 35 H 0.09 1.86 7.85 -2.39 -0.02 1.84 16 36 H 0.39 9.58 7.76 -74.06 -0.57 9.01 16 37 H 0.04 1.67 6.74 -2.39 -0.02 1.66 16 38 H 0.07 2.25 6.78 -2.39 -0.02 2.23 16 39 H 0.40 12.39 7.12 -92.71 -0.66 11.73 16 40 H 0.25 13.82 8.31 -92.70 -0.77 13.05 16 41 H 0.11 5.37 6.04 -2.91 -0.02 5.35 16 42 H 0.12 4.29 8.06 -2.91 -0.02 4.27 16 43 H 0.14 4.00 8.06 -2.91 -0.02 3.98 16 44 H 0.13 4.21 8.06 -2.91 -0.02 4.18 16 45 H 0.10 4.47 7.01 -2.91 -0.02 4.45 16 Total: -1.00 -64.13 357.80 -0.26 -64.38 By element: Atomic # 1 Polarization: 46.94 SS G_CDS: -0.22 Total: 46.73 kcal Atomic # 6 Polarization: -21.13 SS G_CDS: 3.68 Total: -17.44 kcal Atomic # 7 Polarization: -73.37 SS G_CDS: -2.11 Total: -75.48 kcal Atomic # 8 Polarization: -56.09 SS G_CDS: -3.64 Total: -59.73 kcal Atomic # 14 Polarization: 39.52 SS G_CDS: 2.03 Total: 41.54 kcal Total: -64.13 -0.26 -64.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417729809.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.137 kcal (2) G-P(sol) polarization free energy of solvation -64.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds