Wall clock time and date at job start Tue Mar 31 2020 13:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.45383 * 2 1 4 4 C 1.53036 * 109.46173 * 240.02370 * 2 1 3 5 5 C 1.53116 * 109.27806 * 299.16542 * 4 2 1 6 6 C 1.53115 * 109.16049 * 302.34441 * 5 4 2 7 7 H 1.09002 * 109.50676 * 297.71202 * 6 5 4 8 8 C 1.50705 * 109.50162 * 177.59988 * 6 5 4 9 9 O 1.20830 * 119.99562 * 240.19756 * 8 6 5 10 10 O 1.34220 * 120.00308 * 60.19442 * 8 6 5 11 11 C 1.53029 * 109.28136 * 57.65686 * 6 5 4 12 12 N 1.46849 * 109.46298 * 119.97133 * 2 1 3 13 13 C 1.46902 * 111.00035 * 294.17923 * 12 2 1 14 14 C 1.50698 * 109.47067 * 190.25409 * 13 12 2 15 15 C 1.38299 * 119.93062 * 269.72769 * 14 13 12 16 16 C 1.38104 * 120.06808 * 179.72620 * 15 14 13 17 17 C 1.38881 * 119.92994 * 0.54237 * 16 15 14 18 18 O 1.35745 * 120.06946 * 179.74771 * 17 16 15 19 19 C 1.34829 * 116.99938 * 174.44177 * 18 17 16 20 20 H 1.07993 * 120.00037 * 5.06121 * 19 18 17 21 21 C 1.38658 * 119.99757 * 185.05778 * 19 18 17 22 22 N 1.31550 * 120.00187 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99781 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47004 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.46986 * 120.00024 * 23 21 19 26 26 H 1.48491 * 109.47080 * 240.00012 * 23 21 19 27 27 C 1.38883 * 119.85979 * 359.72612 * 17 16 15 28 28 C 1.38094 * 119.93227 * 0.02562 * 27 17 16 29 29 H 1.09002 * 109.47115 * 300.03005 * 1 2 3 30 30 H 1.08997 * 109.46924 * 60.02352 * 1 2 3 31 31 H 1.09000 * 109.47173 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.50372 * 179.22259 * 4 2 1 33 33 H 1.09005 * 109.53217 * 59.12894 * 4 2 1 34 34 H 1.09003 * 109.52034 * 182.43891 * 5 4 2 35 35 H 1.08997 * 109.57655 * 62.28680 * 5 4 2 36 36 H 0.96699 * 117.00066 * 180.02562 * 10 8 6 37 37 H 1.09001 * 109.46473 * 180.80482 * 11 6 5 38 38 H 1.08999 * 109.45509 * 60.82574 * 11 6 5 39 39 H 1.09000 * 109.47310 * 70.25423 * 13 12 2 40 40 H 1.08996 * 109.46630 * 310.24966 * 13 12 2 41 41 H 1.08001 * 119.96734 * 359.97438 * 15 14 13 42 42 H 1.08003 * 120.03457 * 180.27214 * 16 15 14 43 43 H 0.97000 * 119.99880 * 179.97438 * 22 21 19 44 44 H 1.07998 * 120.03210 * 180.02562 * 27 17 16 45 45 H 1.07997 * 119.96659 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7209 -1.2499 5 6 1.5443 -2.1696 -1.2355 6 6 2.0269 -2.8531 0.0468 7 1 3.1166 -2.8751 0.0596 8 6 1.4940 -4.2619 0.0972 9 8 0.7796 -4.6053 1.0092 10 8 1.8127 -5.1351 -0.8710 11 6 1.5174 -2.0705 1.2591 12 7 2.0194 -0.6917 1.1994 13 6 1.6651 0.0507 2.4166 14 6 2.3900 -0.5440 3.5964 15 6 1.8009 -1.5590 4.3282 16 6 2.4650 -2.1098 5.4065 17 6 3.7208 -1.6357 5.7627 18 8 4.3739 -2.1716 6.8252 19 6 5.6343 -1.7469 7.0467 20 1 6.0508 -0.9541 6.4433 21 6 6.3955 -2.3280 8.0495 22 7 5.8882 -3.2941 8.7843 23 14 8.1414 -1.7391 8.3569 24 1 8.4718 -0.6503 7.4026 25 1 8.2543 -1.2295 9.7471 26 1 9.0858 -2.8690 8.1657 27 6 4.3073 -0.6125 5.0292 28 6 3.6403 -0.0694 3.9489 29 1 -0.3633 0.5143 0.8897 30 1 -0.3633 0.5135 -0.8902 31 1 -0.3633 -1.0277 0.0005 32 1 3.1299 -0.7093 -1.2576 33 1 1.6644 -0.2166 -2.1403 34 1 1.9409 -2.6989 -2.1019 35 1 0.4549 -2.1832 -1.2677 36 1 1.4467 -6.0270 -0.7958 37 1 1.8713 -2.5465 2.1736 38 1 0.4275 -2.0607 1.2530 39 1 0.5895 -0.0133 2.5811 40 1 1.9538 1.0954 2.3018 41 1 0.8222 -1.9240 4.0536 42 1 2.0063 -2.9055 5.9748 43 1 6.4209 -3.7008 9.4855 44 1 5.2839 -0.2420 5.3035 45 1 4.0960 0.7260 3.3779 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589308535.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:38 Heat of formation + Delta-G solvation = -94.929981 kcal Electronic energy + Delta-G solvation = -27066.930279 eV Core-core repulsion = 23242.749513 eV Total energy + Delta-G solvation = -3824.180766 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.86459 -39.49302 -38.74091 -36.59644 -36.26047 -33.89335 -32.41935 -32.09544 -30.18037 -29.52351 -27.75444 -26.02720 -25.03031 -24.35826 -22.87880 -21.90724 -21.20305 -20.30788 -18.81362 -18.13310 -17.94151 -17.02366 -16.83193 -16.21614 -15.65270 -15.44747 -14.86966 -14.56288 -14.29538 -14.10323 -13.89700 -13.62942 -13.54815 -13.34376 -13.24818 -12.97185 -12.64105 -12.49919 -12.47757 -12.30467 -11.73398 -11.66994 -11.47515 -11.31287 -11.24375 -11.07799 -10.91968 -10.71368 -10.67180 -10.55344 -10.40636 -10.36680 -10.29931 -9.28766 -8.81220 -8.24837 -8.10189 -7.13470 -6.42534 -4.01138 2.08351 2.25642 2.31650 2.83711 3.13795 3.15423 3.21015 3.98147 4.01211 4.39735 4.57816 4.61818 4.69301 4.81191 5.01602 5.12010 5.15708 5.22920 5.28793 5.32691 5.35210 5.37054 5.46042 5.53375 5.63179 5.67934 5.73684 5.80187 5.82662 5.88835 5.92154 5.94618 6.09966 6.19876 6.25921 6.35064 6.47417 6.74463 6.94436 7.05733 7.08021 7.17391 7.31874 7.45340 7.48706 7.75521 7.87309 8.02955 9.03355 9.74367 10.75694 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.016214 B = 0.003077 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.476889 B = 9096.225689 C = 9786.612627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.075 3.925 3 H 0.085 0.915 4 C -0.108 4.108 5 C -0.111 4.111 6 C -0.076 4.076 7 H 0.118 0.882 8 C 0.483 3.517 9 O -0.510 6.510 10 O -0.517 6.517 11 C 0.065 3.935 12 N -0.524 5.524 13 C 0.116 3.884 14 C -0.181 4.181 15 C -0.068 4.068 16 C -0.193 4.193 17 C 0.156 3.844 18 O -0.179 6.179 19 C -0.391 4.391 20 H 0.093 0.907 21 C 0.038 3.962 22 N -0.863 5.863 23 Si 0.940 3.060 24 H -0.267 1.267 25 H -0.276 1.276 26 H -0.276 1.276 27 C -0.236 4.236 28 C -0.049 4.049 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.408 0.592 37 H 0.096 0.904 38 H 0.044 0.956 39 H 0.036 0.964 40 H 0.075 0.925 41 H 0.107 0.893 42 H 0.115 0.885 43 H 0.269 0.731 44 H 0.126 0.874 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.627 4.230 -21.070 23.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.033 4.033 3 H 0.103 0.897 4 C -0.146 4.146 5 C -0.149 4.149 6 C -0.096 4.096 7 H 0.136 0.864 8 C 0.324 3.676 9 O -0.397 6.397 10 O -0.329 6.329 11 C -0.063 4.063 12 N -0.248 5.248 13 C -0.011 4.011 14 C -0.183 4.183 15 C -0.086 4.086 16 C -0.212 4.212 17 C 0.102 3.898 18 O -0.083 6.083 19 C -0.467 4.467 20 H 0.110 0.890 21 C -0.166 4.166 22 N -0.498 5.498 23 Si 0.765 3.235 24 H -0.191 1.191 25 H -0.202 1.202 26 H -0.202 1.202 27 C -0.255 4.255 28 C -0.068 4.068 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.267 0.733 37 H 0.114 0.886 38 H 0.062 0.938 39 H 0.054 0.946 40 H 0.093 0.907 41 H 0.125 0.875 42 H 0.133 0.867 43 H 0.079 0.921 44 H 0.143 0.857 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -8.138 4.213 -20.499 22.454 hybrid contribution -0.207 -0.392 0.317 0.545 sum -8.344 3.820 -20.182 22.171 Atomic orbital electron populations 1.22539 0.97873 1.02355 1.02190 1.21762 0.92614 0.98353 0.90601 0.89693 1.21586 1.01900 0.94249 0.96888 1.21595 1.01103 0.96435 0.95776 1.21044 1.03556 0.86786 0.98179 0.86403 1.23518 0.77392 0.88166 0.78486 1.90748 1.35295 1.79110 1.34594 1.84526 1.71617 1.26411 1.50359 1.21965 0.97852 0.89036 0.97445 1.62120 1.59410 1.01431 1.01846 1.20777 0.96610 0.96638 0.87040 1.19062 0.97258 1.02539 0.99396 1.20508 0.98220 0.95400 0.94505 1.20180 0.95316 1.04623 1.01088 1.19394 0.91918 0.91343 0.87128 1.83977 1.27139 1.58785 1.38352 1.21379 0.86965 1.19711 1.18631 0.89001 1.25290 0.99857 0.95828 0.95592 1.70049 1.37128 1.23091 1.19552 0.85653 0.80503 0.78667 0.78643 1.19077 1.20181 1.20160 1.21151 1.02575 1.01795 0.99984 1.20541 0.93341 0.97828 0.95083 0.92345 0.92215 0.92092 0.90540 0.91062 0.90550 0.91559 0.73318 0.88583 0.93763 0.94620 0.90651 0.87477 0.86678 0.92111 0.85651 0.87522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.65 8.18 37.16 0.30 -1.34 16 2 C 0.08 0.70 2.92 -67.72 -0.20 0.50 16 3 H 0.08 0.75 8.01 -51.93 -0.42 0.33 16 4 C -0.11 -0.85 5.61 -26.65 -0.15 -1.00 16 5 C -0.11 -0.93 4.91 -26.61 -0.13 -1.06 16 6 C -0.08 -0.83 2.79 -91.70 -0.26 -1.09 16 7 H 0.12 1.30 8.14 -51.93 -0.42 0.88 16 8 C 0.48 5.70 7.63 36.01 0.27 5.97 16 9 O -0.51 -7.76 16.74 -18.75 -0.31 -8.07 16 10 O -0.52 -4.60 13.35 -39.23 -0.52 -5.12 16 11 C 0.06 0.83 3.45 -3.83 -0.01 0.82 16 12 N -0.52 -6.35 4.59 -228.12 -1.05 -7.40 16 13 C 0.12 1.52 4.57 -4.98 -0.02 1.50 16 14 C -0.18 -3.07 4.89 -104.58 -0.51 -3.58 16 15 C -0.07 -1.23 7.88 -39.61 -0.31 -1.55 16 16 C -0.19 -4.19 9.99 -39.39 -0.39 -4.58 16 17 C 0.16 3.83 6.65 -39.10 -0.26 3.57 16 18 O -0.18 -5.20 9.76 0.07 0.00 -5.20 16 19 C -0.39 -11.04 9.49 30.89 0.29 -10.75 16 20 H 0.09 2.41 5.20 -52.49 -0.27 2.13 16 21 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 22 N -0.86 -25.61 13.67 55.48 0.76 -24.86 16 23 Si 0.94 20.71 29.55 -169.99 -5.02 15.69 16 24 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 25 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 26 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 27 C -0.24 -5.16 9.17 -39.40 -0.36 -5.52 16 28 C -0.05 -0.90 9.69 -39.61 -0.38 -1.28 16 29 H 0.06 0.53 6.78 -51.93 -0.35 0.18 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.57 4.80 -51.93 -0.25 0.32 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.55 6.56 -51.93 -0.34 0.21 16 36 H 0.41 2.01 9.10 45.56 0.41 2.42 16 37 H 0.10 1.52 5.75 -51.93 -0.30 1.22 16 38 H 0.04 0.57 6.13 -51.93 -0.32 0.26 16 39 H 0.04 0.45 6.91 -51.93 -0.36 0.09 16 40 H 0.08 0.91 7.92 -51.93 -0.41 0.49 16 41 H 0.11 1.74 7.97 -52.49 -0.42 1.32 16 42 H 0.12 2.46 8.06 -52.48 -0.42 2.04 16 43 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 44 H 0.13 2.76 5.64 -52.49 -0.30 2.46 16 45 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 358.21 15.07 5.40 5.40 Total: -1.00 -32.93 358.21 -8.38 -41.31 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -5.41 Total: 6.66 kcal Atomic # 6 Polarization: -16.20 SS G_CDS: -2.22 Total: -18.42 kcal Atomic # 7 Polarization: -31.96 SS G_CDS: -0.29 Total: -32.25 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: -0.84 Total: -18.39 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.93 -8.38 -41.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589308535.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.616 kcal (2) G-P(sol) polarization free energy of solvation -32.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds