Wall clock time and date at job start Tue Mar 31 2020 13:22:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.45383 * 2 1 4 4 C 1.53036 * 109.46173 * 240.02370 * 2 1 3 5 5 C 1.53116 * 109.27806 * 299.16542 * 4 2 1 6 6 C 1.53115 * 109.16049 * 302.34441 * 5 4 2 7 7 H 1.09002 * 109.50676 * 297.71202 * 6 5 4 8 8 C 1.50705 * 109.50162 * 177.59988 * 6 5 4 9 9 O 1.20830 * 119.99562 * 240.19756 * 8 6 5 10 10 O 1.34220 * 120.00308 * 60.19442 * 8 6 5 11 11 C 1.53029 * 109.28136 * 57.65686 * 6 5 4 12 12 N 1.46849 * 109.46298 * 119.97133 * 2 1 3 13 13 C 1.46902 * 111.00035 * 294.17923 * 12 2 1 14 14 C 1.50698 * 109.47067 * 190.25409 * 13 12 2 15 15 C 1.38299 * 119.93062 * 269.72769 * 14 13 12 16 16 C 1.38104 * 120.06808 * 179.72620 * 15 14 13 17 17 C 1.38881 * 119.92994 * 0.54237 * 16 15 14 18 18 O 1.35745 * 120.06946 * 179.74771 * 17 16 15 19 19 C 1.34829 * 116.99938 * 174.44177 * 18 17 16 20 20 H 1.07993 * 120.00037 * 5.06121 * 19 18 17 21 21 C 1.38658 * 119.99757 * 185.05778 * 19 18 17 22 22 N 1.31550 * 120.00187 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99781 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47004 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.46986 * 120.00024 * 23 21 19 26 26 H 1.48491 * 109.47080 * 240.00012 * 23 21 19 27 27 C 1.38883 * 119.85979 * 359.72612 * 17 16 15 28 28 C 1.38094 * 119.93227 * 0.02562 * 27 17 16 29 29 H 1.09002 * 109.47115 * 300.03005 * 1 2 3 30 30 H 1.08997 * 109.46924 * 60.02352 * 1 2 3 31 31 H 1.09000 * 109.47173 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.50372 * 179.22259 * 4 2 1 33 33 H 1.09005 * 109.53217 * 59.12894 * 4 2 1 34 34 H 1.09003 * 109.52034 * 182.43891 * 5 4 2 35 35 H 1.08997 * 109.57655 * 62.28680 * 5 4 2 36 36 H 0.96699 * 117.00066 * 180.02562 * 10 8 6 37 37 H 1.09001 * 109.46473 * 180.80482 * 11 6 5 38 38 H 1.08999 * 109.45509 * 60.82574 * 11 6 5 39 39 H 1.09000 * 109.47310 * 70.25423 * 13 12 2 40 40 H 1.08996 * 109.46630 * 310.24966 * 13 12 2 41 41 H 1.08001 * 119.96734 * 359.97438 * 15 14 13 42 42 H 1.08003 * 120.03457 * 180.27214 * 16 15 14 43 43 H 0.97000 * 119.99880 * 179.97438 * 22 21 19 44 44 H 1.07998 * 120.03210 * 180.02562 * 27 17 16 45 45 H 1.07997 * 119.96659 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7209 -1.2499 5 6 1.5443 -2.1696 -1.2355 6 6 2.0269 -2.8531 0.0468 7 1 3.1166 -2.8751 0.0596 8 6 1.4940 -4.2619 0.0972 9 8 0.7796 -4.6053 1.0092 10 8 1.8127 -5.1351 -0.8710 11 6 1.5174 -2.0705 1.2591 12 7 2.0194 -0.6917 1.1994 13 6 1.6651 0.0507 2.4166 14 6 2.3900 -0.5440 3.5964 15 6 1.8009 -1.5590 4.3282 16 6 2.4650 -2.1098 5.4065 17 6 3.7208 -1.6357 5.7627 18 8 4.3739 -2.1716 6.8252 19 6 5.6343 -1.7469 7.0467 20 1 6.0508 -0.9541 6.4433 21 6 6.3955 -2.3280 8.0495 22 7 5.8882 -3.2941 8.7843 23 14 8.1414 -1.7391 8.3569 24 1 8.4718 -0.6503 7.4026 25 1 8.2543 -1.2295 9.7471 26 1 9.0858 -2.8690 8.1657 27 6 4.3073 -0.6125 5.0292 28 6 3.6403 -0.0694 3.9489 29 1 -0.3633 0.5143 0.8897 30 1 -0.3633 0.5135 -0.8902 31 1 -0.3633 -1.0277 0.0005 32 1 3.1299 -0.7093 -1.2576 33 1 1.6644 -0.2166 -2.1403 34 1 1.9409 -2.6989 -2.1019 35 1 0.4549 -2.1832 -1.2677 36 1 1.4467 -6.0270 -0.7958 37 1 1.8713 -2.5465 2.1736 38 1 0.4275 -2.0607 1.2530 39 1 0.5895 -0.0133 2.5811 40 1 1.9538 1.0954 2.3018 41 1 0.8222 -1.9240 4.0536 42 1 2.0063 -2.9055 5.9748 43 1 6.4209 -3.7008 9.4855 44 1 5.2839 -0.2420 5.3035 45 1 4.0960 0.7260 3.3779 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589308535.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:37 Heat of formation + Delta-G solvation = -117.529040 kcal Electronic energy + Delta-G solvation = -27067.910248 eV Core-core repulsion = 23242.749513 eV Total energy + Delta-G solvation = -3825.160735 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.78105 -40.85359 -40.06354 -38.25330 -37.14775 -34.96785 -34.20658 -33.12729 -31.82432 -30.90298 -28.57124 -27.63820 -26.54632 -25.25862 -23.92440 -23.54207 -22.07523 -21.82417 -19.85817 -19.59618 -19.03571 -18.80553 -17.84429 -17.07802 -16.66009 -16.48774 -16.44325 -16.21118 -15.52325 -15.46062 -15.33694 -15.03276 -14.80189 -14.42844 -14.22372 -14.17080 -14.08463 -13.69439 -13.57646 -13.28911 -13.13030 -12.90935 -12.61168 -12.55604 -12.40211 -12.37971 -12.13937 -12.08679 -12.01831 -11.84347 -11.50168 -11.24785 -11.18243 -11.14132 -10.79392 -9.75426 -9.21703 -8.86662 -8.46824 -6.15117 0.60318 0.68751 1.16225 1.35117 1.43671 1.54010 2.02151 2.18118 2.76767 3.06229 3.34688 3.52182 3.58680 3.79518 3.89945 4.03993 4.07947 4.13858 4.21084 4.27056 4.39967 4.47483 4.54579 4.59445 4.62271 4.66886 4.73817 4.78058 4.83272 4.84990 4.99260 5.09168 5.11803 5.13672 5.16718 5.22733 5.30718 5.31468 5.53089 5.57226 5.59025 5.72603 5.82045 6.03595 6.11272 6.20964 6.31484 6.95799 6.97916 7.79630 8.76970 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.016214 B = 0.003077 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.476889 B = 9096.225689 C = 9786.612627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.073 3.927 3 H 0.099 0.901 4 C -0.104 4.104 5 C -0.105 4.105 6 C -0.076 4.076 7 H 0.117 0.883 8 C 0.487 3.513 9 O -0.553 6.553 10 O -0.508 6.508 11 C 0.069 3.931 12 N -0.530 5.530 13 C 0.117 3.883 14 C -0.152 4.152 15 C -0.061 4.061 16 C -0.208 4.208 17 C 0.115 3.885 18 O -0.235 6.235 19 C -0.412 4.412 20 H 0.103 0.897 21 C -0.025 4.025 22 N -0.923 5.923 23 Si 1.020 2.980 24 H -0.249 1.249 25 H -0.268 1.268 26 H -0.269 1.269 27 C -0.241 4.241 28 C -0.045 4.045 29 H 0.053 0.947 30 H 0.078 0.922 31 H 0.050 0.950 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.090 0.910 35 H 0.068 0.932 36 H 0.426 0.574 37 H 0.060 0.940 38 H 0.042 0.958 39 H 0.046 0.954 40 H 0.100 0.900 41 H 0.130 0.870 42 H 0.105 0.895 43 H 0.272 0.728 44 H 0.119 0.881 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.733 6.668 -24.965 27.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.034 4.034 3 H 0.117 0.883 4 C -0.142 4.142 5 C -0.142 4.142 6 C -0.095 4.095 7 H 0.134 0.866 8 C 0.330 3.670 9 O -0.443 6.443 10 O -0.321 6.321 11 C -0.059 4.059 12 N -0.254 5.254 13 C -0.010 4.010 14 C -0.153 4.153 15 C -0.080 4.080 16 C -0.228 4.228 17 C 0.065 3.935 18 O -0.142 6.142 19 C -0.489 4.489 20 H 0.120 0.880 21 C -0.222 4.222 22 N -0.562 5.562 23 Si 0.839 3.161 24 H -0.172 1.172 25 H -0.193 1.193 26 H -0.194 1.194 27 C -0.261 4.261 28 C -0.064 4.064 29 H 0.072 0.928 30 H 0.097 0.903 31 H 0.069 0.931 32 H 0.093 0.907 33 H 0.115 0.885 34 H 0.108 0.892 35 H 0.087 0.913 36 H 0.288 0.712 37 H 0.078 0.922 38 H 0.060 0.940 39 H 0.064 0.936 40 H 0.118 0.882 41 H 0.148 0.852 42 H 0.123 0.877 43 H 0.081 0.919 44 H 0.137 0.863 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -8.276 6.664 -24.474 26.682 hybrid contribution -0.436 -1.114 1.208 1.700 sum -8.712 5.550 -23.267 25.457 Atomic orbital electron populations 1.22497 0.97223 1.01895 1.02948 1.21916 0.93130 0.98824 0.89547 0.88303 1.21603 1.01831 0.93645 0.97108 1.21596 1.01256 0.96823 0.94528 1.21054 1.03292 0.86390 0.98797 0.86562 1.23725 0.76444 0.88790 0.78030 1.90739 1.37395 1.79916 1.36272 1.84480 1.71163 1.27421 1.49026 1.21812 0.97646 0.89640 0.96843 1.62065 1.59857 1.01075 1.02425 1.20812 0.96648 0.97574 0.85934 1.19597 0.96340 1.00065 0.99304 1.20788 0.98905 0.95219 0.93051 1.20372 0.95006 1.05025 1.02367 1.19892 0.92999 0.92973 0.87685 1.83942 1.28013 1.61170 1.41099 1.21890 0.87384 1.20309 1.19271 0.87959 1.26630 1.04797 0.95816 0.94961 1.70201 1.39422 1.25472 1.21060 0.84511 0.73956 0.78623 0.78986 1.17248 1.19311 1.19397 1.21266 1.02636 1.01344 1.00824 1.20914 0.93509 0.98112 0.93828 0.92839 0.90265 0.93136 0.90716 0.88514 0.89154 0.91321 0.71225 0.92169 0.93986 0.93567 0.88200 0.85210 0.87727 0.91889 0.86277 0.83859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.48 8.18 71.98 0.59 -1.90 16 2 C 0.07 1.05 2.92 44.94 0.13 1.18 16 3 H 0.10 1.21 8.01 -2.39 -0.02 1.19 16 4 C -0.10 -1.19 5.61 30.65 0.17 -1.01 16 5 C -0.10 -1.40 4.91 30.67 0.15 -1.25 16 6 C -0.08 -1.51 2.79 -11.49 -0.03 -1.54 16 7 H 0.12 2.37 8.14 -2.39 -0.02 2.35 16 8 C 0.49 10.96 7.63 71.24 0.54 11.51 16 9 O -0.55 -16.82 16.74 21.95 0.37 -16.45 16 10 O -0.51 -8.07 13.35 -51.32 -0.69 -8.76 16 11 C 0.07 1.66 3.45 86.32 0.30 1.95 16 12 N -0.53 -11.10 4.59 -875.64 -4.02 -15.13 16 13 C 0.12 2.65 4.57 85.56 0.39 3.04 16 14 C -0.15 -4.82 4.89 -19.83 -0.10 -4.92 16 15 C -0.06 -2.21 7.88 22.25 0.18 -2.04 16 16 C -0.21 -9.50 9.99 22.39 0.22 -9.28 16 17 C 0.11 5.95 6.65 22.58 0.15 6.10 16 18 O -0.24 -14.67 9.76 -22.68 -0.22 -14.90 16 19 C -0.41 -24.59 9.49 67.92 0.64 -23.95 16 20 H 0.10 5.58 5.20 -2.91 -0.02 5.57 16 21 C -0.03 -1.45 5.49 84.84 0.47 -0.99 16 22 N -0.92 -58.01 13.67 21.61 0.30 -57.71 16 23 Si 1.02 43.60 29.55 68.60 2.03 45.63 16 24 H -0.25 -9.77 7.11 99.48 0.71 -9.06 16 25 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 26 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 27 C -0.24 -10.73 9.17 22.39 0.21 -10.52 16 28 C -0.05 -1.57 9.69 22.25 0.22 -1.35 16 29 H 0.05 0.77 6.78 -2.39 -0.02 0.75 16 30 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.05 0.79 4.80 -2.39 -0.01 0.78 16 32 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.10 0.69 8.14 -2.38 -0.02 0.67 16 34 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.07 0.92 6.56 -2.39 -0.02 0.90 16 36 H 0.43 3.45 9.10 -74.06 -0.67 2.78 16 37 H 0.06 1.88 5.75 -2.39 -0.01 1.86 16 38 H 0.04 1.03 6.13 -2.39 -0.01 1.01 16 39 H 0.05 1.00 6.91 -2.39 -0.02 0.98 16 40 H 0.10 1.87 7.92 -2.39 -0.02 1.85 16 41 H 0.13 4.10 7.97 -2.91 -0.02 4.07 16 42 H 0.10 4.85 8.06 -2.91 -0.02 4.82 16 43 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 44 H 0.12 5.36 5.64 -2.91 -0.02 5.34 16 45 H 0.14 3.95 8.06 -2.91 -0.02 3.93 16 Total: -1.00 -77.96 358.21 2.34 -75.62 By element: Atomic # 1 Polarization: 26.31 SS G_CDS: 0.35 Total: 26.66 kcal Atomic # 6 Polarization: -39.19 SS G_CDS: 4.23 Total: -34.96 kcal Atomic # 7 Polarization: -69.11 SS G_CDS: -3.73 Total: -72.84 kcal Atomic # 8 Polarization: -39.56 SS G_CDS: -0.54 Total: -40.10 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -77.96 2.34 -75.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589308535.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.909 kcal (2) G-P(sol) polarization free energy of solvation -77.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds