Wall clock time and date at job start Tue Mar 31 2020 13:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.52573 * 2 1 4 4 C 1.53121 * 109.52001 * 239.81511 * 2 1 3 5 5 C 1.53034 * 109.28062 * 297.74708 * 4 2 1 6 6 N 1.46843 * 109.52454 * 300.82548 * 5 4 2 7 7 C 1.46900 * 110.99870 * 185.83625 * 6 5 4 8 8 C 1.50695 * 109.47279 * 293.94945 * 7 6 5 9 9 C 1.38302 * 119.93083 * 269.72764 * 8 7 6 10 10 C 1.38105 * 120.06795 * 179.72268 * 9 8 7 11 11 C 1.38882 * 119.92443 * 0.55046 * 10 9 8 12 12 O 1.35761 * 120.06340 * 179.74726 * 11 10 9 13 13 C 1.34830 * 116.99773 * 174.44386 * 12 11 10 14 14 H 1.08000 * 119.99914 * 5.05418 * 13 12 11 15 15 C 1.38651 * 119.99461 * 185.05497 * 13 12 11 16 16 N 1.31556 * 119.99569 * 179.97438 * 15 13 12 17 17 Si 1.86793 * 120.00476 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.47235 * 90.00144 * 17 15 13 19 19 H 1.48497 * 109.47213 * 210.00257 * 17 15 13 20 20 H 1.48500 * 109.46878 * 329.99992 * 17 15 13 21 21 C 1.38871 * 119.86703 * 359.72502 * 11 10 9 22 22 C 1.38102 * 119.93051 * 359.97438 * 21 11 10 23 23 C 1.46845 * 111.20222 * 61.73725 * 6 5 4 24 24 C 1.53034 * 109.52381 * 298.26183 * 23 6 5 25 25 H 1.08997 * 109.50408 * 299.19847 * 24 23 6 26 26 C 1.50697 * 109.50855 * 179.11929 * 24 23 6 27 27 O 1.20825 * 120.00080 * 240.00328 * 26 24 23 28 28 O 1.34229 * 119.99738 * 59.99343 * 26 24 23 29 29 H 1.09003 * 109.46728 * 299.87064 * 1 2 3 30 30 H 1.09004 * 109.47206 * 59.86266 * 1 2 3 31 31 H 1.08994 * 109.47537 * 179.86828 * 1 2 3 32 32 H 1.09003 * 109.50348 * 177.80866 * 4 2 1 33 33 H 1.09008 * 109.50484 * 57.69538 * 4 2 1 34 34 H 1.09000 * 109.46492 * 180.80367 * 5 4 2 35 35 H 1.09003 * 109.45839 * 60.83506 * 5 4 2 36 36 H 1.09007 * 109.46998 * 53.95460 * 7 6 5 37 37 H 1.09006 * 109.46640 * 173.94663 * 7 6 5 38 38 H 1.07995 * 119.96659 * 0.02562 * 9 8 7 39 39 H 1.08000 * 120.03687 * 180.27225 * 10 9 8 40 40 H 0.97001 * 120.00289 * 179.97438 * 16 15 13 41 41 H 1.08009 * 120.03777 * 179.97438 * 21 11 10 42 42 H 1.08004 * 119.96310 * 180.02562 * 22 21 11 43 43 H 1.09006 * 109.46139 * 58.27086 * 23 6 5 44 44 H 1.08999 * 109.46488 * 178.24250 * 23 6 5 45 45 H 0.96708 * 116.99546 * 180.02562 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0416 -0.7256 -1.2475 5 6 1.5766 -2.1831 -1.2107 6 7 2.0924 -2.8324 0.0012 7 6 1.7822 -4.2682 0.0019 8 6 0.2907 -4.4600 0.0997 9 6 -0.3109 -4.5703 1.3401 10 6 -1.6783 -4.7403 1.4332 11 6 -2.4478 -4.8119 0.2792 12 8 -3.7915 -4.9841 0.3674 13 6 -4.4923 -4.9299 -0.7832 14 1 -3.9750 -4.8376 -1.7267 15 6 -5.8771 -4.9925 -0.7550 16 7 -6.5609 -4.9390 -1.8775 17 14 -6.7718 -5.1528 0.8769 18 1 -7.0699 -3.8004 1.4129 19 1 -8.0414 -5.8959 0.6745 20 1 -5.9153 -5.8896 1.8407 21 6 -1.8399 -4.7065 -0.9649 22 6 -0.4729 -4.5304 -1.0512 23 6 1.5767 -2.1820 1.2126 24 6 2.0417 -0.7245 1.2481 25 1 3.1310 -0.6905 1.2684 26 6 1.4944 -0.0515 2.4803 27 8 0.7721 0.9111 2.3726 28 8 1.8091 -0.5216 3.6976 29 1 -0.3633 0.5118 0.8912 30 1 -0.3634 0.5160 -0.8888 31 1 -0.3634 -1.0276 -0.0024 32 1 3.1309 -0.6916 -1.2672 33 1 1.6457 -0.2396 -2.1393 34 1 1.9512 -2.7063 -2.0905 35 1 0.4871 -2.2166 -1.2049 36 1 2.1468 -4.7191 -0.9212 37 1 2.2665 -4.7441 0.8547 38 1 0.2885 -4.5185 2.2369 39 1 -2.1482 -4.8220 2.4022 40 1 -7.5298 -4.9832 -1.8579 41 1 -2.4356 -4.7623 -1.8642 42 1 0.0004 -4.4479 -2.0185 43 1 0.4871 -2.2155 1.2070 44 1 1.9514 -2.7044 2.0929 45 1 1.4337 -0.0570 4.4582 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589355689.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:08 Heat of formation + Delta-G solvation = -91.405139 kcal Electronic energy + Delta-G solvation = -27733.025742 eV Core-core repulsion = 23908.997825 eV Total energy + Delta-G solvation = -3824.027917 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.02964 -39.63984 -38.70466 -36.92293 -36.23944 -34.26417 -32.42825 -31.55130 -30.32447 -29.92774 -27.71331 -26.03452 -24.81994 -24.48386 -22.75612 -21.98802 -21.52459 -20.38168 -18.59015 -18.17107 -17.94438 -17.27883 -16.88691 -16.24564 -15.68911 -15.08972 -14.85323 -14.79209 -14.68379 -14.23355 -13.93048 -13.85882 -13.79774 -13.47882 -13.13147 -12.85752 -12.59916 -12.43889 -12.26207 -12.06328 -11.85802 -11.67276 -11.40299 -11.31717 -11.28389 -11.12204 -10.92250 -10.82023 -10.70377 -10.63129 -10.40338 -10.21214 -10.09822 -9.45356 -8.92173 -8.33761 -8.26524 -7.39752 -6.47381 -4.14251 2.01977 2.04203 2.10446 2.87572 3.17891 3.21931 3.35884 3.96984 4.18693 4.41422 4.43026 4.64964 4.78806 4.80565 4.99968 5.04355 5.18118 5.23637 5.28438 5.31551 5.41417 5.44688 5.55274 5.63573 5.67344 5.74125 5.76776 5.83359 5.89416 5.98285 6.04063 6.08117 6.12639 6.21106 6.24992 6.32996 6.48645 6.61985 6.69526 6.92043 6.99215 7.07158 7.19228 7.24472 7.53545 7.73096 7.75766 7.97300 8.87621 9.49116 10.60080 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.014790 B = 0.003666 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.698170 B = 7635.033309 C = 8107.685672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.074 4.074 3 H 0.076 0.924 4 C -0.110 4.110 5 C 0.044 3.956 6 N -0.526 5.526 7 C 0.109 3.891 8 C -0.217 4.217 9 C -0.066 4.066 10 C -0.194 4.194 11 C 0.162 3.838 12 O -0.216 6.216 13 C -0.391 4.391 14 H 0.106 0.894 15 C 0.065 3.935 16 N -0.877 5.877 17 Si 0.905 3.095 18 H -0.273 1.273 19 H -0.281 1.281 20 H -0.260 1.260 21 C -0.222 4.222 22 C -0.061 4.061 23 C 0.061 3.939 24 C -0.072 4.072 25 H 0.113 0.887 26 C 0.484 3.516 27 O -0.508 6.508 28 O -0.516 6.516 29 H 0.080 0.920 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.053 0.947 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.111 0.889 39 H 0.115 0.885 40 H 0.280 0.720 41 H 0.132 0.868 42 H 0.108 0.892 43 H 0.057 0.943 44 H 0.083 0.917 45 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.899 6.888 5.675 20.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.093 4.093 3 H 0.094 0.906 4 C -0.147 4.147 5 C -0.084 4.084 6 N -0.249 5.249 7 C -0.018 4.018 8 C -0.219 4.219 9 C -0.085 4.085 10 C -0.213 4.213 11 C 0.109 3.891 12 O -0.121 6.121 13 C -0.466 4.466 14 H 0.124 0.876 15 C -0.139 4.139 16 N -0.515 5.515 17 Si 0.730 3.270 18 H -0.198 1.198 19 H -0.207 1.207 20 H -0.184 1.184 21 C -0.241 4.241 22 C -0.079 4.079 23 C -0.068 4.068 24 C -0.091 4.091 25 H 0.131 0.869 26 C 0.326 3.674 27 O -0.395 6.395 28 O -0.328 6.328 29 H 0.098 0.902 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.071 0.929 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.129 0.871 39 H 0.134 0.866 40 H 0.090 0.910 41 H 0.150 0.850 42 H 0.126 0.874 43 H 0.075 0.925 44 H 0.101 0.899 45 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 19.005 6.949 5.373 20.937 hybrid contribution -1.759 0.164 0.937 2.000 sum 17.246 7.114 6.309 19.693 Atomic orbital electron populations 1.22255 0.94226 1.02701 1.03496 1.21014 0.97071 0.98798 0.92416 0.90609 1.21626 1.01159 0.94917 0.97045 1.22221 0.99249 0.94233 0.92703 1.62388 1.58058 1.02802 1.01615 1.20969 0.90726 0.87545 1.02591 1.20003 0.96417 1.12023 0.93467 1.20521 0.93411 0.98220 0.96306 1.20213 0.93357 1.11162 0.96577 1.19145 0.84048 0.92563 0.93302 1.83577 1.14433 1.78888 1.35163 1.20764 0.89625 1.52022 0.84205 0.87623 1.24467 0.95276 0.95612 0.98554 1.69642 1.08091 1.47591 1.26162 0.86188 0.78798 0.79047 0.82930 1.19849 1.20684 1.18375 1.21274 0.95047 1.09625 0.98129 1.20668 0.93216 0.97161 0.96900 1.22025 0.99479 0.91088 0.94172 1.21125 1.02553 0.96285 0.89185 0.86888 1.23528 0.77411 0.81759 0.84699 1.90655 1.34684 1.27264 1.86941 1.84557 1.70999 1.60230 1.16965 0.90178 0.92631 0.92245 0.91165 0.90953 0.90793 0.92933 0.90438 0.90496 0.87104 0.86650 0.90973 0.85019 0.87441 0.92485 0.89900 0.73351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.25 8.26 37.16 0.31 -1.94 16 2 C -0.07 -0.81 2.42 -90.50 -0.22 -1.03 16 3 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 4 C -0.11 -1.08 5.60 -26.65 -0.15 -1.23 16 5 C 0.04 0.50 4.57 -3.84 -0.02 0.48 16 6 N -0.53 -5.95 4.86 -236.12 -1.15 -7.09 16 7 C 0.11 1.29 5.55 -4.98 -0.03 1.26 16 8 C -0.22 -3.26 4.03 -104.58 -0.42 -3.68 16 9 C -0.07 -1.05 8.02 -39.61 -0.32 -1.36 16 10 C -0.19 -3.72 9.99 -39.39 -0.39 -4.11 16 11 C 0.16 3.65 6.65 -39.11 -0.26 3.39 16 12 O -0.22 -5.64 8.59 0.02 0.00 -5.64 16 13 C -0.39 -10.90 9.95 30.88 0.31 -10.60 16 14 H 0.11 3.01 5.44 -52.49 -0.29 2.72 16 15 C 0.06 1.80 5.49 -17.52 -0.10 1.70 16 16 N -0.88 -25.16 13.96 55.48 0.77 -24.38 16 17 Si 0.90 21.58 28.62 -169.99 -4.86 16.71 16 18 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.26 -6.21 7.11 56.52 0.40 -5.81 16 21 C -0.22 -4.61 9.17 -39.40 -0.36 -4.97 16 22 C -0.06 -1.02 8.10 -39.61 -0.32 -1.34 16 23 C 0.06 0.70 3.51 -3.84 -0.01 0.68 16 24 C -0.07 -0.75 2.58 -91.69 -0.24 -0.99 16 25 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 26 C 0.48 5.45 7.33 36.00 0.26 5.71 16 27 O -0.51 -7.07 14.28 -18.75 -0.27 -7.34 16 28 O -0.52 -4.56 13.34 -39.26 -0.52 -5.09 16 29 H 0.08 1.18 5.34 -51.93 -0.28 0.90 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.88 4.92 -51.93 -0.26 0.63 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.67 8.14 -51.92 -0.42 0.24 16 34 H 0.07 0.78 8.06 -51.93 -0.42 0.36 16 35 H 0.05 0.72 4.91 -51.93 -0.26 0.47 16 36 H 0.08 0.86 8.00 -51.93 -0.42 0.44 16 37 H 0.08 0.84 8.08 -51.93 -0.42 0.42 16 38 H 0.11 1.48 8.03 -52.49 -0.42 1.05 16 39 H 0.12 2.10 8.06 -52.49 -0.42 1.68 16 40 H 0.28 7.42 8.31 -40.82 -0.34 7.08 16 41 H 0.13 2.92 5.64 -52.48 -0.30 2.63 16 42 H 0.11 1.58 8.03 -52.48 -0.42 1.16 16 43 H 0.06 0.80 4.85 -51.93 -0.25 0.55 16 44 H 0.08 0.90 8.11 -51.93 -0.42 0.48 16 45 H 0.41 1.99 9.10 45.56 0.41 2.40 16 LS Contribution 351.81 15.07 5.30 5.30 Total: -1.00 -30.69 351.81 -8.08 -38.77 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -5.40 Total: 6.79 kcal Atomic # 6 Polarization: -16.08 SS G_CDS: -1.96 Total: -18.03 kcal Atomic # 7 Polarization: -31.10 SS G_CDS: -0.37 Total: -31.47 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: -0.79 Total: -18.07 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.86 Total: 16.71 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.69 -8.08 -38.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589355689.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.637 kcal (2) G-P(sol) polarization free energy of solvation -30.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds