Wall clock time and date at job start Tue Mar 31 2020 13:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.52573 * 2 1 4 4 C 1.53121 * 109.52001 * 239.81511 * 2 1 3 5 5 C 1.53034 * 109.28062 * 297.74708 * 4 2 1 6 6 N 1.46843 * 109.52454 * 300.82548 * 5 4 2 7 7 C 1.46900 * 110.99870 * 185.83625 * 6 5 4 8 8 C 1.50695 * 109.47279 * 293.94945 * 7 6 5 9 9 C 1.38302 * 119.93083 * 269.72764 * 8 7 6 10 10 C 1.38105 * 120.06795 * 179.72268 * 9 8 7 11 11 C 1.38882 * 119.92443 * 0.55046 * 10 9 8 12 12 O 1.35761 * 120.06340 * 179.74726 * 11 10 9 13 13 C 1.34830 * 116.99773 * 174.44386 * 12 11 10 14 14 H 1.08000 * 119.99914 * 5.05418 * 13 12 11 15 15 C 1.38651 * 119.99461 * 185.05497 * 13 12 11 16 16 N 1.31556 * 119.99569 * 179.97438 * 15 13 12 17 17 Si 1.86793 * 120.00476 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.47235 * 90.00144 * 17 15 13 19 19 H 1.48497 * 109.47213 * 210.00257 * 17 15 13 20 20 H 1.48500 * 109.46878 * 329.99992 * 17 15 13 21 21 C 1.38871 * 119.86703 * 359.72502 * 11 10 9 22 22 C 1.38102 * 119.93051 * 359.97438 * 21 11 10 23 23 C 1.46845 * 111.20222 * 61.73725 * 6 5 4 24 24 C 1.53034 * 109.52381 * 298.26183 * 23 6 5 25 25 H 1.08997 * 109.50408 * 299.19847 * 24 23 6 26 26 C 1.50697 * 109.50855 * 179.11929 * 24 23 6 27 27 O 1.20825 * 120.00080 * 240.00328 * 26 24 23 28 28 O 1.34229 * 119.99738 * 59.99343 * 26 24 23 29 29 H 1.09003 * 109.46728 * 299.87064 * 1 2 3 30 30 H 1.09004 * 109.47206 * 59.86266 * 1 2 3 31 31 H 1.08994 * 109.47537 * 179.86828 * 1 2 3 32 32 H 1.09003 * 109.50348 * 177.80866 * 4 2 1 33 33 H 1.09008 * 109.50484 * 57.69538 * 4 2 1 34 34 H 1.09000 * 109.46492 * 180.80367 * 5 4 2 35 35 H 1.09003 * 109.45839 * 60.83506 * 5 4 2 36 36 H 1.09007 * 109.46998 * 53.95460 * 7 6 5 37 37 H 1.09006 * 109.46640 * 173.94663 * 7 6 5 38 38 H 1.07995 * 119.96659 * 0.02562 * 9 8 7 39 39 H 1.08000 * 120.03687 * 180.27225 * 10 9 8 40 40 H 0.97001 * 120.00289 * 179.97438 * 16 15 13 41 41 H 1.08009 * 120.03777 * 179.97438 * 21 11 10 42 42 H 1.08004 * 119.96310 * 180.02562 * 22 21 11 43 43 H 1.09006 * 109.46139 * 58.27086 * 23 6 5 44 44 H 1.08999 * 109.46488 * 178.24250 * 23 6 5 45 45 H 0.96708 * 116.99546 * 180.02562 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0416 -0.7256 -1.2475 5 6 1.5766 -2.1831 -1.2107 6 7 2.0924 -2.8324 0.0012 7 6 1.7822 -4.2682 0.0019 8 6 0.2907 -4.4600 0.0997 9 6 -0.3109 -4.5703 1.3401 10 6 -1.6783 -4.7403 1.4332 11 6 -2.4478 -4.8119 0.2792 12 8 -3.7915 -4.9841 0.3674 13 6 -4.4923 -4.9299 -0.7832 14 1 -3.9750 -4.8376 -1.7267 15 6 -5.8771 -4.9925 -0.7550 16 7 -6.5609 -4.9390 -1.8775 17 14 -6.7718 -5.1528 0.8769 18 1 -7.0699 -3.8004 1.4129 19 1 -8.0414 -5.8959 0.6745 20 1 -5.9153 -5.8896 1.8407 21 6 -1.8399 -4.7065 -0.9649 22 6 -0.4729 -4.5304 -1.0512 23 6 1.5767 -2.1820 1.2126 24 6 2.0417 -0.7245 1.2481 25 1 3.1310 -0.6905 1.2684 26 6 1.4944 -0.0515 2.4803 27 8 0.7721 0.9111 2.3726 28 8 1.8091 -0.5216 3.6976 29 1 -0.3633 0.5118 0.8912 30 1 -0.3634 0.5160 -0.8888 31 1 -0.3634 -1.0276 -0.0024 32 1 3.1309 -0.6916 -1.2672 33 1 1.6457 -0.2396 -2.1393 34 1 1.9512 -2.7063 -2.0905 35 1 0.4871 -2.2166 -1.2049 36 1 2.1468 -4.7191 -0.9212 37 1 2.2665 -4.7441 0.8547 38 1 0.2885 -4.5185 2.2369 39 1 -2.1482 -4.8220 2.4022 40 1 -7.5298 -4.9832 -1.8579 41 1 -2.4356 -4.7623 -1.8642 42 1 0.0004 -4.4479 -2.0185 43 1 0.4871 -2.2155 1.2070 44 1 1.9514 -2.7044 2.0929 45 1 1.4337 -0.0570 4.4582 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589355689.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:07 Heat of formation + Delta-G solvation = -112.114641 kcal Electronic energy + Delta-G solvation = -27733.923773 eV Core-core repulsion = 23908.997825 eV Total energy + Delta-G solvation = -3824.925949 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.93834 -41.02517 -39.94376 -38.31187 -37.14277 -35.37532 -34.43962 -32.47773 -31.76492 -31.26801 -28.83935 -27.59129 -26.27869 -25.41663 -23.88588 -23.41598 -22.52143 -21.68833 -19.85265 -19.54987 -19.06323 -18.94281 -17.77748 -17.12420 -16.78023 -16.71400 -16.08219 -15.88088 -15.86570 -15.61884 -15.50476 -15.33227 -15.01050 -14.48256 -14.34820 -14.26980 -14.18559 -13.96507 -13.43156 -13.14099 -13.02743 -12.87654 -12.69610 -12.49556 -12.44845 -12.39581 -12.26939 -12.10673 -11.98725 -11.77351 -11.58008 -11.31369 -11.28007 -11.03006 -10.92479 -9.82172 -9.30066 -8.99690 -8.54036 -6.26623 0.52822 0.58369 1.18906 1.27230 1.31174 1.47436 2.13125 2.23837 2.69984 2.97119 3.08344 3.20413 3.55699 3.76406 3.95731 3.99992 4.07491 4.13042 4.17879 4.32044 4.42784 4.44009 4.52969 4.53448 4.58736 4.67460 4.75959 4.81392 4.83623 4.91022 4.95107 5.04421 5.10314 5.17138 5.18483 5.22034 5.31160 5.34203 5.44411 5.53101 5.69743 5.73284 5.75810 5.87825 6.10203 6.14865 6.21371 6.80368 7.01959 7.54872 8.57652 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.014790 B = 0.003666 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.698170 B = 7635.033309 C = 8107.685672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.072 4.072 3 H 0.082 0.918 4 C -0.103 4.103 5 C 0.041 3.959 6 N -0.512 5.512 7 C 0.109 3.891 8 C -0.185 4.185 9 C -0.057 4.057 10 C -0.196 4.196 11 C 0.119 3.881 12 O -0.247 6.247 13 C -0.399 4.399 14 H 0.080 0.920 15 C 0.011 3.989 16 N -0.922 5.922 17 Si 0.969 3.031 18 H -0.268 1.268 19 H -0.265 1.265 20 H -0.263 1.263 21 C -0.238 4.238 22 C -0.059 4.059 23 C 0.062 3.938 24 C -0.069 4.069 25 H 0.138 0.862 26 C 0.486 3.514 27 O -0.541 6.541 28 O -0.509 6.509 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.037 0.963 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.024 0.976 36 H 0.095 0.905 37 H 0.102 0.898 38 H 0.151 0.849 39 H 0.123 0.877 40 H 0.285 0.715 41 H 0.104 0.896 42 H 0.132 0.868 43 H 0.028 0.972 44 H 0.099 0.901 45 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.880 7.031 7.464 25.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.091 4.091 3 H 0.100 0.900 4 C -0.141 4.141 5 C -0.087 4.087 6 N -0.234 5.234 7 C -0.019 4.019 8 C -0.187 4.187 9 C -0.076 4.076 10 C -0.215 4.215 11 C 0.070 3.930 12 O -0.155 6.155 13 C -0.476 4.476 14 H 0.097 0.903 15 C -0.187 4.187 16 N -0.563 5.563 17 Si 0.791 3.209 18 H -0.193 1.193 19 H -0.190 1.190 20 H -0.187 1.187 21 C -0.258 4.258 22 C -0.078 4.078 23 C -0.067 4.067 24 C -0.088 4.088 25 H 0.156 0.844 26 C 0.330 3.670 27 O -0.432 6.432 28 O -0.323 6.323 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.056 0.944 32 H 0.109 0.891 33 H 0.095 0.905 34 H 0.106 0.894 35 H 0.042 0.958 36 H 0.113 0.887 37 H 0.120 0.880 38 H 0.169 0.831 39 H 0.141 0.859 40 H 0.095 0.905 41 H 0.122 0.878 42 H 0.150 0.850 43 H 0.047 0.953 44 H 0.117 0.883 45 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges 23.044 7.093 7.186 25.159 hybrid contribution -2.603 0.199 0.417 2.644 sum 20.441 7.291 7.603 22.996 Atomic orbital electron populations 1.22175 0.96507 1.00914 1.02548 1.21003 0.94954 0.99608 0.93527 0.89981 1.21601 1.02297 0.93615 0.96576 1.22286 0.97552 0.95593 0.93298 1.62447 1.57169 1.02298 1.01478 1.21181 0.87591 0.88268 1.04822 1.20562 0.98632 1.07196 0.92301 1.20984 0.92199 0.96113 0.98261 1.20527 0.94664 1.10535 0.95796 1.19707 0.83288 0.94801 0.95197 1.83517 1.16104 1.81960 1.33876 1.20689 0.90230 1.52344 0.84311 0.90253 1.25263 0.95894 0.95603 1.01989 1.69725 1.08568 1.49996 1.28007 0.85240 0.77858 0.79206 0.78551 1.19289 1.18953 1.18741 1.21270 0.96805 1.10955 0.96749 1.20945 0.91553 0.96168 0.99111 1.22028 0.97763 0.92069 0.94800 1.21131 1.03820 0.95277 0.88541 0.84404 1.23679 0.76642 0.81172 0.85542 1.90659 1.36180 1.28880 1.87477 1.84507 1.70695 1.60102 1.16963 0.91902 0.92823 0.94351 0.89080 0.90517 0.89415 0.95822 0.88695 0.87969 0.83123 0.85861 0.90540 0.87843 0.84985 0.95344 0.88311 0.71321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.34 8.26 71.98 0.59 -3.74 16 2 C -0.07 -1.42 2.42 -10.71 -0.03 -1.44 16 3 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 4 C -0.10 -1.71 5.60 30.65 0.17 -1.54 16 5 C 0.04 0.79 4.57 86.33 0.39 1.19 16 6 N -0.51 -9.28 4.86 -900.94 -4.38 -13.66 16 7 C 0.11 2.02 5.55 85.56 0.48 2.49 16 8 C -0.18 -4.99 4.03 -19.84 -0.08 -5.07 16 9 C -0.06 -1.65 8.02 22.25 0.18 -1.47 16 10 C -0.20 -7.42 9.99 22.39 0.22 -7.19 16 11 C 0.12 5.60 6.65 22.58 0.15 5.75 16 12 O -0.25 -13.63 8.59 -22.86 -0.20 -13.82 16 13 C -0.40 -23.88 9.95 67.92 0.68 -23.20 16 14 H 0.08 4.98 5.44 -2.91 -0.02 4.96 16 15 C 0.01 0.64 5.49 84.83 0.47 1.11 16 16 N -0.92 -55.66 13.96 21.61 0.30 -55.36 16 17 Si 0.97 46.11 28.62 68.60 1.96 48.07 16 18 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 19 H -0.26 -11.71 7.11 99.48 0.71 -11.01 16 20 H -0.26 -12.49 7.11 99.48 0.71 -11.78 16 21 C -0.24 -10.41 9.17 22.39 0.21 -10.20 16 22 C -0.06 -1.94 8.10 22.25 0.18 -1.76 16 23 C 0.06 1.19 3.51 86.32 0.30 1.49 16 24 C -0.07 -1.21 2.58 -11.49 -0.03 -1.24 16 25 H 0.14 1.82 8.14 -2.39 -0.02 1.80 16 26 C 0.49 9.81 7.33 71.23 0.52 10.33 16 27 O -0.54 -14.54 14.28 21.97 0.31 -14.23 16 28 O -0.51 -7.41 13.34 -51.41 -0.69 -8.10 16 29 H 0.06 1.88 5.34 -2.39 -0.01 1.87 16 30 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 31 H 0.04 1.15 4.92 -2.39 -0.01 1.14 16 32 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 34 H 0.09 1.50 8.06 -2.39 -0.02 1.48 16 35 H 0.02 0.61 4.91 -2.39 -0.01 0.60 16 36 H 0.09 1.57 8.00 -2.38 -0.02 1.55 16 37 H 0.10 1.54 8.08 -2.38 -0.02 1.52 16 38 H 0.15 3.22 8.03 -2.91 -0.02 3.20 16 39 H 0.12 4.40 8.06 -2.91 -0.02 4.37 16 40 H 0.28 15.76 8.31 -92.71 -0.77 14.99 16 41 H 0.10 5.05 5.64 -2.91 -0.02 5.03 16 42 H 0.13 3.65 8.03 -2.91 -0.02 3.63 16 43 H 0.03 0.73 4.85 -2.38 -0.01 0.72 16 44 H 0.10 1.63 8.11 -2.39 -0.02 1.61 16 45 H 0.43 2.98 9.10 -74.05 -0.67 2.31 16 Total: -1.00 -72.06 351.81 2.08 -69.99 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: 0.35 Total: 21.60 kcal Atomic # 6 Polarization: -38.91 SS G_CDS: 4.41 Total: -34.50 kcal Atomic # 7 Polarization: -64.94 SS G_CDS: -4.07 Total: -69.01 kcal Atomic # 8 Polarization: -35.58 SS G_CDS: -0.57 Total: -36.14 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 1.96 Total: 48.07 kcal Total: -72.06 2.08 -69.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589355689.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.129 kcal (2) G-P(sol) polarization free energy of solvation -72.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds