Wall clock time and date at job start Tue Mar 31 2020 13:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 110.05688 * 2 1 4 4 C 1.54266 * 110.03024 * 238.58641 * 2 1 3 5 5 H 1.09005 * 110.48749 * 335.77844 * 4 2 1 6 6 C 1.52994 * 110.49112 * 98.42540 * 4 2 1 7 7 C 1.50701 * 109.47553 * 181.22868 * 6 4 2 8 8 O 1.20829 * 119.99397 * 359.97438 * 7 6 4 9 9 O 1.34229 * 120.00325 * 180.02562 * 7 6 4 10 10 C 1.54895 * 104.19334 * 217.10545 * 4 2 1 11 11 C 1.54887 * 102.75130 * 37.93893 * 10 4 2 12 12 C 1.53873 * 110.03444 * 121.41468 * 2 1 3 13 13 H 1.09001 * 110.07464 * 238.59018 * 12 2 1 14 14 N 1.46497 * 110.03353 * 0.02562 * 12 2 1 15 15 C 1.39781 * 120.00257 * 203.62025 * 14 12 2 16 16 C 1.38955 * 120.00451 * 359.71801 * 15 14 12 17 17 C 1.38009 * 119.99445 * 180.25091 * 16 15 14 18 18 C 1.38895 * 120.00546 * 0.02862 * 17 16 15 19 19 O 1.35801 * 119.99074 * 179.97438 * 18 17 16 20 20 C 1.34813 * 116.99938 * 174.47885 * 19 18 17 21 21 H 1.08008 * 119.99791 * 5.06034 * 20 19 18 22 22 C 1.38615 * 120.00013 * 185.05911 * 20 19 18 23 23 N 1.31579 * 120.00465 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99934 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.46924 * 60.00007 * 24 22 20 26 26 H 1.48499 * 109.46954 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47027 * 299.99998 * 24 22 20 28 28 C 1.38894 * 120.01516 * 359.97438 * 18 17 16 29 29 C 1.38012 * 120.00335 * 359.97438 * 28 18 17 30 30 H 1.09000 * 109.47147 * 300.03457 * 1 2 3 31 31 H 1.09004 * 109.47592 * 60.03487 * 1 2 3 32 32 H 1.09000 * 109.47471 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47394 * 301.22869 * 6 4 2 34 34 H 1.09003 * 109.47021 * 61.22314 * 6 4 2 35 35 H 0.96696 * 116.99836 * 179.97438 * 9 7 6 36 36 H 1.08998 * 110.75169 * 279.62259 * 10 4 2 37 37 H 1.09006 * 110.75426 * 156.25469 * 10 4 2 38 38 H 1.08996 * 110.48954 * 203.37951 * 11 10 4 39 39 H 1.08998 * 110.59660 * 80.79219 * 11 10 4 40 40 H 0.96998 * 120.00012 * 23.61000 * 14 12 2 41 41 H 1.07999 * 120.00175 * 0.25802 * 16 15 14 42 42 H 1.08001 * 119.99448 * 180.02562 * 17 16 15 43 43 H 0.96993 * 120.00392 * 180.02562 * 23 22 20 44 44 H 1.08000 * 120.00082 * 180.02562 * 28 18 17 45 45 H 1.08007 * 120.00253 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0584 -0.7554 -1.2369 5 1 1.3141 -1.4660 -1.5967 6 6 2.4391 0.2297 -2.3439 7 6 2.9231 -0.5327 -3.5503 8 8 2.9602 -1.7402 -3.5269 9 8 3.3140 0.1296 -4.6505 10 6 3.3136 -1.5007 -0.7192 11 6 2.8875 -1.9406 0.7035 12 6 2.0571 -0.7535 1.2337 13 1 2.6866 -0.0957 1.8331 14 7 0.9360 -1.2455 2.0382 15 6 1.1148 -1.5087 3.3993 16 6 2.3575 -1.3092 3.9882 17 6 2.5351 -1.5740 5.3309 18 6 1.4721 -2.0404 6.0935 19 8 1.6473 -2.3014 7.4146 20 6 0.5512 -2.6412 8.1221 21 1 -0.3955 -2.7755 7.6197 22 6 0.6391 -2.8182 9.4940 23 7 1.7922 -2.6541 10.1061 24 14 -0.8797 -3.2897 10.4742 25 1 -1.4059 -4.5867 9.9781 26 1 -0.5222 -3.4176 11.9098 27 1 -1.9179 -2.2403 10.3136 28 6 0.2298 -2.2400 5.5052 29 6 0.0513 -1.9744 4.1627 30 1 -0.3633 0.5144 0.8897 31 1 -0.3634 0.5133 -0.8903 32 1 -0.3634 -1.0276 0.0005 33 1 1.5675 0.8251 -2.6160 34 1 3.2318 0.8877 -1.9878 35 1 3.6168 -0.4026 -5.3988 36 1 4.1709 -0.8290 -0.6753 37 1 3.5324 -2.3679 -1.3424 38 1 3.7637 -2.1037 1.3309 39 1 2.2778 -2.8431 0.6593 40 1 0.0695 -1.3886 1.6263 41 1 3.1842 -0.9468 3.3952 42 1 3.5009 -1.4185 5.7888 43 1 1.8538 -2.7783 11.0661 44 1 -0.5967 -2.6023 6.0984 45 1 -0.9148 -2.1292 3.7053 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594185152.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:40 Heat of formation + Delta-G solvation = -96.501269 kcal Electronic energy + Delta-G solvation = -26117.989012 eV Core-core repulsion = 22293.740110 eV Total energy + Delta-G solvation = -3824.248902 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.83290 -39.59625 -38.60974 -36.75810 -36.34343 -33.91867 -32.08700 -31.64944 -30.89310 -30.09872 -27.38638 -25.97796 -25.07842 -24.80734 -22.13818 -21.89921 -21.03548 -20.42174 -19.30522 -18.33791 -17.75369 -17.25328 -16.88364 -16.51240 -16.28255 -15.59444 -14.97130 -14.60239 -14.36818 -14.07269 -13.95909 -13.52726 -13.45947 -13.36275 -13.18566 -12.81303 -12.53503 -12.51178 -12.31113 -12.11014 -11.88060 -11.64397 -11.44648 -11.26514 -11.16687 -11.06921 -10.95516 -10.88154 -10.79706 -10.67873 -10.62038 -10.48462 -10.29344 -9.19249 -9.11903 -8.39817 -8.12696 -6.34334 -6.28962 -3.86374 1.84182 2.24616 2.61555 2.65619 3.20542 3.21666 3.24152 3.86764 4.08640 4.20487 4.35269 4.38106 4.72347 4.75367 4.90402 4.99426 5.09343 5.18395 5.23149 5.28251 5.31411 5.37272 5.40878 5.50739 5.60177 5.68237 5.70398 5.74385 5.83417 5.93748 5.96181 6.06184 6.15947 6.17195 6.23956 6.27105 6.35267 6.60686 6.90891 6.96625 7.18736 7.35625 7.49859 7.51297 7.69414 8.05282 8.15256 8.30685 9.16657 9.91827 10.89536 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.041164 B = 0.002101 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.039359 B =13323.657231 C =13642.950625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.096 4.096 3 H 0.081 0.919 4 C -0.077 4.077 5 H 0.086 0.914 6 C -0.107 4.107 7 C 0.476 3.524 8 O -0.510 6.510 9 O -0.522 6.522 10 C -0.120 4.120 11 C -0.139 4.139 12 C 0.160 3.840 13 H 0.078 0.922 14 N -0.754 5.754 15 C 0.126 3.874 16 C -0.146 4.146 17 C -0.150 4.150 18 C 0.112 3.888 19 O -0.189 6.189 20 C -0.386 4.386 21 H 0.087 0.913 22 C 0.035 3.965 23 N -0.870 5.870 24 Si 0.937 3.063 25 H -0.272 1.272 26 H -0.279 1.279 27 H -0.272 1.272 28 C -0.190 4.190 29 C -0.144 4.144 30 H 0.066 0.934 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.105 0.895 34 H 0.107 0.893 35 H 0.409 0.591 36 H 0.063 0.937 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.392 0.608 41 H 0.111 0.889 42 H 0.115 0.885 43 H 0.267 0.733 44 H 0.126 0.874 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.221 7.037 -26.518 27.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.115 4.115 3 H 0.099 0.901 4 C -0.096 4.096 5 H 0.104 0.896 6 C -0.145 4.145 7 C 0.318 3.682 8 O -0.397 6.397 9 O -0.334 6.334 10 C -0.158 4.158 11 C -0.179 4.179 12 C 0.053 3.947 13 H 0.096 0.904 14 N -0.392 5.392 15 C 0.028 3.972 16 C -0.168 4.168 17 C -0.170 4.170 18 C 0.060 3.940 19 O -0.094 6.094 20 C -0.463 4.463 21 H 0.104 0.896 22 C -0.167 4.167 23 N -0.506 5.506 24 Si 0.763 3.237 25 H -0.197 1.197 26 H -0.205 1.205 27 H -0.197 1.197 28 C -0.210 4.210 29 C -0.166 4.166 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.123 0.877 34 H 0.126 0.874 35 H 0.268 0.732 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.230 0.770 41 H 0.129 0.871 42 H 0.134 0.866 43 H 0.077 0.923 44 H 0.144 0.856 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.539 6.983 -25.801 26.735 hybrid contribution -0.927 -0.678 -0.222 1.170 sum -0.388 6.305 -26.023 26.779 Atomic orbital electron populations 1.21808 0.94770 1.01861 1.02084 1.22000 0.96334 0.99479 0.93691 0.90081 1.21941 0.98853 0.96073 0.92739 0.89574 1.21499 1.03525 0.99040 0.90390 1.23629 0.73622 0.87000 0.83908 1.90736 1.50567 1.15924 1.82502 1.84547 1.77222 1.45812 1.25817 1.22585 0.96271 1.00461 0.96501 1.22930 1.00245 0.99223 0.95472 1.21293 0.88433 0.94155 0.90779 0.90411 1.44661 1.12090 1.76532 1.05897 1.17418 0.94097 1.01779 0.83942 1.20198 0.95536 1.06674 0.94384 1.20030 0.98188 1.05746 0.93071 1.19236 0.93011 0.95693 0.86090 1.83986 1.34540 1.76398 1.14511 1.21176 0.87957 1.47568 0.89593 0.89555 1.25205 0.98331 0.97405 0.95787 1.70035 1.23899 1.46749 1.09963 0.85844 0.80198 0.79112 0.78595 1.19716 1.20450 1.19712 1.20978 0.98199 1.07136 0.94654 1.20217 0.96934 1.05555 0.93910 0.91536 0.92672 0.92318 0.87667 0.87441 0.73241 0.91779 0.90503 0.91400 0.90975 0.77045 0.87141 0.86646 0.92294 0.85616 0.87800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 7.72 37.16 0.29 -0.82 16 2 C -0.10 -0.75 3.07 -89.50 -0.27 -1.02 16 3 H 0.08 0.55 7.84 -51.93 -0.41 0.14 16 4 C -0.08 -0.59 2.01 -88.96 -0.18 -0.76 16 5 H 0.09 0.75 7.73 -51.93 -0.40 0.35 16 6 C -0.11 -0.61 5.17 -27.89 -0.14 -0.75 16 7 C 0.48 3.57 8.11 36.01 0.29 3.86 16 8 O -0.51 -5.50 15.27 -18.75 -0.29 -5.78 16 9 O -0.52 -2.89 13.42 -39.25 -0.53 -3.42 16 10 C -0.12 -1.08 5.63 -24.74 -0.14 -1.22 16 11 C -0.14 -1.50 6.53 -25.07 -0.16 -1.66 16 12 C 0.16 1.70 2.87 -66.81 -0.19 1.51 16 13 H 0.08 0.88 6.52 -51.93 -0.34 0.55 16 14 N -0.75 -9.69 4.71 -51.03 -0.24 -9.93 16 15 C 0.13 2.13 6.66 -83.71 -0.56 1.58 16 16 C -0.15 -2.63 9.21 -39.40 -0.36 -2.99 16 17 C -0.15 -3.24 9.98 -39.42 -0.39 -3.63 16 18 C 0.11 2.77 6.65 -39.10 -0.26 2.51 16 19 O -0.19 -5.55 9.76 -0.06 0.00 -5.55 16 20 C -0.39 -11.08 9.48 30.87 0.29 -10.79 16 21 H 0.09 2.29 5.20 -52.48 -0.27 2.02 16 22 C 0.04 1.00 5.49 -17.52 -0.10 0.91 16 23 N -0.87 -26.23 13.67 55.48 0.76 -25.47 16 24 Si 0.94 21.11 29.55 -169.99 -5.02 16.09 16 25 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 26 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 27 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 28 C -0.19 -4.20 9.16 -39.42 -0.36 -4.56 16 29 C -0.14 -2.66 9.89 -39.40 -0.39 -3.05 16 30 H 0.07 0.57 7.79 -51.93 -0.40 0.16 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.46 6.85 -51.93 -0.36 0.10 16 33 H 0.11 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.11 0.47 8.10 -51.93 -0.42 0.05 16 35 H 0.41 0.74 9.10 45.56 0.41 1.16 16 36 H 0.06 0.51 8.02 -51.93 -0.42 0.10 16 37 H 0.08 0.80 7.06 -51.93 -0.37 0.44 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.07 0.88 8.05 -51.93 -0.42 0.46 16 40 H 0.39 4.50 5.76 -40.82 -0.23 4.27 16 41 H 0.11 1.70 6.25 -52.49 -0.33 1.37 16 42 H 0.12 2.41 8.06 -52.49 -0.42 1.98 16 43 H 0.27 7.42 8.31 -40.82 -0.34 7.09 16 44 H 0.13 2.79 5.63 -52.49 -0.30 2.50 16 45 H 0.10 1.65 8.06 -52.48 -0.42 1.23 16 LS Contribution 364.08 15.07 5.49 5.49 Total: -1.00 -34.09 364.08 -7.97 -42.05 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -5.49 Total: 7.42 kcal Atomic # 6 Polarization: -18.26 SS G_CDS: -2.64 Total: -20.90 kcal Atomic # 7 Polarization: -35.92 SS G_CDS: 0.52 Total: -35.40 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: -0.81 Total: -14.75 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.09 -7.97 -42.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594185152.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.448 kcal (2) G-P(sol) polarization free energy of solvation -34.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds