Wall clock time and date at job start Tue Mar 31 2020 13:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 110.05688 * 2 1 4 4 C 1.54266 * 110.03024 * 238.58641 * 2 1 3 5 5 H 1.09005 * 110.48749 * 335.77844 * 4 2 1 6 6 C 1.52994 * 110.49112 * 98.42540 * 4 2 1 7 7 C 1.50701 * 109.47553 * 181.22868 * 6 4 2 8 8 O 1.20829 * 119.99397 * 359.97438 * 7 6 4 9 9 O 1.34229 * 120.00325 * 180.02562 * 7 6 4 10 10 C 1.54895 * 104.19334 * 217.10545 * 4 2 1 11 11 C 1.54887 * 102.75130 * 37.93893 * 10 4 2 12 12 C 1.53873 * 110.03444 * 121.41468 * 2 1 3 13 13 H 1.09001 * 110.07464 * 238.59018 * 12 2 1 14 14 N 1.46497 * 110.03353 * 0.02562 * 12 2 1 15 15 C 1.39781 * 120.00257 * 203.62025 * 14 12 2 16 16 C 1.38955 * 120.00451 * 359.71801 * 15 14 12 17 17 C 1.38009 * 119.99445 * 180.25091 * 16 15 14 18 18 C 1.38895 * 120.00546 * 0.02862 * 17 16 15 19 19 O 1.35801 * 119.99074 * 179.97438 * 18 17 16 20 20 C 1.34813 * 116.99938 * 174.47885 * 19 18 17 21 21 H 1.08008 * 119.99791 * 5.06034 * 20 19 18 22 22 C 1.38615 * 120.00013 * 185.05911 * 20 19 18 23 23 N 1.31579 * 120.00465 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99934 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.46924 * 60.00007 * 24 22 20 26 26 H 1.48499 * 109.46954 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47027 * 299.99998 * 24 22 20 28 28 C 1.38894 * 120.01516 * 359.97438 * 18 17 16 29 29 C 1.38012 * 120.00335 * 359.97438 * 28 18 17 30 30 H 1.09000 * 109.47147 * 300.03457 * 1 2 3 31 31 H 1.09004 * 109.47592 * 60.03487 * 1 2 3 32 32 H 1.09000 * 109.47471 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47394 * 301.22869 * 6 4 2 34 34 H 1.09003 * 109.47021 * 61.22314 * 6 4 2 35 35 H 0.96696 * 116.99836 * 179.97438 * 9 7 6 36 36 H 1.08998 * 110.75169 * 279.62259 * 10 4 2 37 37 H 1.09006 * 110.75426 * 156.25469 * 10 4 2 38 38 H 1.08996 * 110.48954 * 203.37951 * 11 10 4 39 39 H 1.08998 * 110.59660 * 80.79219 * 11 10 4 40 40 H 0.96998 * 120.00012 * 23.61000 * 14 12 2 41 41 H 1.07999 * 120.00175 * 0.25802 * 16 15 14 42 42 H 1.08001 * 119.99448 * 180.02562 * 17 16 15 43 43 H 0.96993 * 120.00392 * 180.02562 * 23 22 20 44 44 H 1.08000 * 120.00082 * 180.02562 * 28 18 17 45 45 H 1.08007 * 120.00253 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0584 -0.7554 -1.2369 5 1 1.3141 -1.4660 -1.5967 6 6 2.4391 0.2297 -2.3439 7 6 2.9231 -0.5327 -3.5503 8 8 2.9602 -1.7402 -3.5269 9 8 3.3140 0.1296 -4.6505 10 6 3.3136 -1.5007 -0.7192 11 6 2.8875 -1.9406 0.7035 12 6 2.0571 -0.7535 1.2337 13 1 2.6866 -0.0957 1.8331 14 7 0.9360 -1.2455 2.0382 15 6 1.1148 -1.5087 3.3993 16 6 2.3575 -1.3092 3.9882 17 6 2.5351 -1.5740 5.3309 18 6 1.4721 -2.0404 6.0935 19 8 1.6473 -2.3014 7.4146 20 6 0.5512 -2.6412 8.1221 21 1 -0.3955 -2.7755 7.6197 22 6 0.6391 -2.8182 9.4940 23 7 1.7922 -2.6541 10.1061 24 14 -0.8797 -3.2897 10.4742 25 1 -1.4059 -4.5867 9.9781 26 1 -0.5222 -3.4176 11.9098 27 1 -1.9179 -2.2403 10.3136 28 6 0.2298 -2.2400 5.5052 29 6 0.0513 -1.9744 4.1627 30 1 -0.3633 0.5144 0.8897 31 1 -0.3634 0.5133 -0.8903 32 1 -0.3634 -1.0276 0.0005 33 1 1.5675 0.8251 -2.6160 34 1 3.2318 0.8877 -1.9878 35 1 3.6168 -0.4026 -5.3988 36 1 4.1709 -0.8290 -0.6753 37 1 3.5324 -2.3679 -1.3424 38 1 3.7637 -2.1037 1.3309 39 1 2.2778 -2.8431 0.6593 40 1 0.0695 -1.3886 1.6263 41 1 3.1842 -0.9468 3.3952 42 1 3.5009 -1.4185 5.7888 43 1 1.8538 -2.7783 11.0661 44 1 -0.5967 -2.6023 6.0984 45 1 -0.9148 -2.1292 3.7053 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594185152.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:39 Heat of formation + Delta-G solvation = -118.690485 kcal Electronic energy + Delta-G solvation = -26118.951209 eV Core-core repulsion = 22293.740110 eV Total energy + Delta-G solvation = -3825.211099 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.45032 -40.79358 -39.95053 -38.21143 -37.01945 -35.14182 -34.04239 -32.41810 -31.88166 -31.58654 -28.73527 -27.43011 -26.37322 -25.72392 -23.61326 -22.62059 -22.52837 -21.16957 -20.29011 -19.49237 -18.91450 -18.77050 -18.11840 -17.37349 -16.85311 -16.78627 -16.20390 -15.97120 -15.72923 -15.37788 -15.12349 -15.01024 -14.67799 -14.40616 -14.12628 -13.94146 -13.81772 -13.63089 -13.42923 -13.32114 -12.96822 -12.74030 -12.69863 -12.48773 -12.41672 -12.22521 -12.09585 -11.95813 -11.75239 -11.62270 -11.47824 -11.45057 -11.23863 -11.05539 -10.85063 -10.11478 -9.74480 -8.37753 -7.87493 -6.01184 0.61663 0.97087 1.31491 1.36810 1.48316 1.53056 2.23406 2.23830 2.73561 2.93384 3.27768 3.54623 3.68618 3.71427 3.76300 4.14220 4.19212 4.22423 4.34802 4.42553 4.45955 4.55620 4.58224 4.60663 4.65527 4.72145 4.77291 4.79351 4.90535 4.99700 5.04617 5.11220 5.15849 5.20943 5.28017 5.31588 5.36981 5.43014 5.52697 5.56234 5.59844 5.72904 5.81566 6.03746 6.13304 6.70585 7.07022 7.07534 7.11048 7.95633 8.86587 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.041164 B = 0.002101 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.039359 B =13323.657231 C =13642.950625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.086 4.086 3 H 0.103 0.897 4 C -0.070 4.070 5 H 0.073 0.927 6 C -0.105 4.105 7 C 0.478 3.522 8 O -0.551 6.551 9 O -0.519 6.519 10 C -0.115 4.115 11 C -0.139 4.139 12 C 0.152 3.848 13 H 0.079 0.921 14 N -0.739 5.739 15 C 0.156 3.844 16 C -0.144 4.144 17 C -0.156 4.156 18 C 0.059 3.941 19 O -0.244 6.244 20 C -0.405 4.405 21 H 0.097 0.903 22 C -0.030 4.030 23 N -0.927 5.927 24 Si 1.017 2.983 25 H -0.259 1.259 26 H -0.273 1.273 27 H -0.258 1.258 28 C -0.193 4.193 29 C -0.149 4.149 30 H 0.058 0.942 31 H 0.075 0.925 32 H 0.053 0.947 33 H 0.129 0.871 34 H 0.128 0.872 35 H 0.424 0.576 36 H 0.077 0.923 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.055 0.945 40 H 0.403 0.597 41 H 0.142 0.858 42 H 0.111 0.889 43 H 0.269 0.731 44 H 0.117 0.883 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.228 8.642 -29.748 31.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.104 4.104 3 H 0.122 0.878 4 C -0.089 4.089 5 H 0.092 0.908 6 C -0.142 4.142 7 C 0.323 3.677 8 O -0.442 6.442 9 O -0.332 6.332 10 C -0.153 4.153 11 C -0.179 4.179 12 C 0.046 3.954 13 H 0.097 0.903 14 N -0.375 5.375 15 C 0.055 3.945 16 C -0.167 4.167 17 C -0.176 4.176 18 C 0.010 3.990 19 O -0.152 6.152 20 C -0.482 4.482 21 H 0.115 0.885 22 C -0.226 4.226 23 N -0.567 5.567 24 Si 0.836 3.164 25 H -0.183 1.183 26 H -0.198 1.198 27 H -0.183 1.183 28 C -0.213 4.213 29 C -0.171 4.171 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.072 0.928 33 H 0.147 0.853 34 H 0.146 0.854 35 H 0.285 0.715 36 H 0.096 0.904 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.243 0.757 41 H 0.159 0.841 42 H 0.129 0.871 43 H 0.078 0.922 44 H 0.135 0.865 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.917 8.618 -29.160 30.421 hybrid contribution -0.395 -1.094 0.324 1.208 sum -1.312 7.524 -28.836 29.831 Atomic orbital electron populations 1.21814 0.94302 1.01746 1.02780 1.21950 0.96623 1.00040 0.91834 0.87835 1.21817 0.97608 0.96135 0.93316 0.90833 1.21550 1.05169 0.98518 0.88920 1.23981 0.72680 0.86504 0.84576 1.90736 1.52469 1.17699 1.83275 1.84514 1.76748 1.45914 1.26053 1.22521 0.97607 1.00318 0.94839 1.22873 0.99677 0.98604 0.96721 1.21547 0.87747 0.94328 0.91763 0.90336 1.44813 1.13554 1.74955 1.04213 1.17549 0.93086 0.98254 0.85614 1.20450 0.97064 1.06059 0.93084 1.20241 0.97415 1.05496 0.94409 1.19735 0.95234 0.98824 0.85226 1.83933 1.35390 1.79092 1.16760 1.21702 0.88548 1.47558 0.90386 0.88522 1.26532 1.02128 0.97257 0.96688 1.70197 1.26751 1.49421 1.10329 0.84677 0.75679 0.79381 0.76637 1.18348 1.19799 1.18251 1.21039 0.96969 1.07076 0.96205 1.20479 0.98899 1.05155 0.92572 0.92305 0.90591 0.92818 0.85273 0.85394 0.71474 0.90408 0.92270 0.92211 0.92651 0.75738 0.84065 0.87104 0.92192 0.86497 0.84548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 7.72 71.98 0.56 -1.08 16 2 C -0.09 -0.98 3.07 -10.07 -0.03 -1.01 16 3 H 0.10 0.83 7.84 -2.39 -0.02 0.81 16 4 C -0.07 -0.83 2.01 -9.72 -0.02 -0.85 16 5 H 0.07 1.10 7.73 -2.38 -0.02 1.08 16 6 C -0.10 -0.77 5.17 29.85 0.15 -0.61 16 7 C 0.48 5.91 8.11 71.24 0.58 6.49 16 8 O -0.55 -11.12 15.27 21.96 0.34 -10.79 16 9 O -0.52 -4.27 13.42 -51.40 -0.69 -4.96 16 10 C -0.12 -1.81 5.63 31.89 0.18 -1.63 16 11 C -0.14 -2.72 6.53 31.67 0.21 -2.51 16 12 C 0.15 2.73 2.87 45.72 0.13 2.86 16 13 H 0.08 1.48 6.52 -2.39 -0.02 1.46 16 14 N -0.74 -16.62 4.71 -315.38 -1.48 -18.10 16 15 C 0.16 4.95 6.66 38.21 0.25 5.20 16 16 C -0.14 -5.00 9.21 22.39 0.21 -4.80 16 17 C -0.16 -6.88 9.98 22.37 0.22 -6.66 16 18 C 0.06 3.06 6.65 22.58 0.15 3.21 16 19 O -0.24 -15.23 9.76 -23.13 -0.23 -15.46 16 20 C -0.41 -24.45 9.48 67.91 0.64 -23.81 16 21 H 0.10 5.35 5.20 -2.91 -0.02 5.33 16 22 C -0.03 -1.77 5.49 84.82 0.47 -1.30 16 23 N -0.93 -58.86 13.67 21.61 0.30 -58.56 16 24 Si 1.02 44.39 29.55 68.60 2.03 46.42 16 25 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 26 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 27 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 28 C -0.19 -8.69 9.16 22.37 0.20 -8.49 16 29 C -0.15 -5.26 9.89 22.39 0.22 -5.03 16 30 H 0.06 0.77 7.79 -2.39 -0.02 0.75 16 31 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.05 0.65 6.85 -2.39 -0.02 0.63 16 33 H 0.13 0.40 8.14 -2.39 -0.02 0.38 16 34 H 0.13 0.49 8.10 -2.39 -0.02 0.47 16 35 H 0.42 0.56 9.10 -74.06 -0.67 -0.11 16 36 H 0.08 1.02 8.02 -2.39 -0.02 1.00 16 37 H 0.06 1.18 7.06 -2.38 -0.02 1.16 16 38 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.05 1.27 8.05 -2.39 -0.02 1.25 16 40 H 0.40 7.80 5.76 -92.71 -0.53 7.26 16 41 H 0.14 3.99 6.25 -2.91 -0.02 3.97 16 42 H 0.11 4.85 8.06 -2.91 -0.02 4.83 16 43 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 44 H 0.12 5.35 5.63 -2.91 -0.02 5.33 16 45 H 0.14 3.90 8.06 -2.91 -0.02 3.88 16 Total: -1.00 -80.00 364.08 4.21 -75.79 By element: Atomic # 1 Polarization: 25.84 SS G_CDS: -0.17 Total: 25.67 kcal Atomic # 6 Polarization: -44.14 SS G_CDS: 4.13 Total: -40.01 kcal Atomic # 7 Polarization: -75.48 SS G_CDS: -1.19 Total: -76.66 kcal Atomic # 8 Polarization: -30.63 SS G_CDS: -0.58 Total: -31.21 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -80.00 4.21 -75.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594185152.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.896 kcal (2) G-P(sol) polarization free energy of solvation -80.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds