Wall clock time and date at job start Tue Mar 31 2020 13:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.51976 * 2 1 4 4 C 1.53113 * 109.52539 * 239.87070 * 2 1 3 5 5 C 1.53039 * 109.27639 * 297.68293 * 4 2 1 6 6 N 1.46850 * 109.52569 * 300.82186 * 5 4 2 7 7 C 1.46898 * 111.00009 * 185.83893 * 6 5 4 8 8 C 1.50698 * 109.47301 * 66.04189 * 7 6 5 9 9 C 1.38304 * 119.92786 * 89.99924 * 8 7 6 10 10 C 1.38103 * 120.06873 * 179.97438 * 9 8 7 11 11 C 1.38878 * 119.93137 * 0.02562 * 10 9 8 12 12 O 1.35751 * 120.07119 * 180.02562 * 11 10 9 13 13 C 1.34838 * 116.99901 * 354.46592 * 12 11 10 14 14 H 1.07999 * 119.99562 * 5.05950 * 13 12 11 15 15 C 1.38647 * 120.00139 * 185.05303 * 13 12 11 16 16 N 1.31560 * 119.99842 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00237 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47007 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47328 * 119.99910 * 17 15 13 20 20 H 1.48502 * 109.47203 * 240.00460 * 17 15 13 21 21 C 1.38873 * 119.86115 * 0.28389 * 11 10 9 22 22 C 1.38111 * 119.93256 * 359.40091 * 21 11 10 23 23 C 1.46844 * 111.19820 * 61.73958 * 6 5 4 24 24 H 1.09003 * 109.45795 * 58.27272 * 23 6 5 25 25 C 1.50695 * 109.46083 * 178.24595 * 23 6 5 26 26 O 1.20823 * 120.00114 * 19.99753 * 25 23 6 27 27 O 1.34235 * 119.99712 * 200.00596 * 25 23 6 28 28 C 1.53034 * 109.52396 * 298.25922 * 23 6 5 29 29 H 1.08997 * 109.47178 * 180.13376 * 1 2 3 30 30 H 1.08998 * 109.46996 * 300.12735 * 1 2 3 31 31 H 1.09000 * 109.47247 * 60.13293 * 1 2 3 32 32 H 1.09000 * 109.50798 * 177.74685 * 4 2 1 33 33 H 1.08999 * 109.50484 * 57.62427 * 4 2 1 34 34 H 1.09003 * 109.46122 * 180.80306 * 5 4 2 35 35 H 1.09006 * 109.45199 * 60.83016 * 5 4 2 36 36 H 1.08997 * 109.47152 * 306.04901 * 7 6 5 37 37 H 1.08994 * 109.47427 * 186.04375 * 7 6 5 38 38 H 1.08000 * 119.97029 * 0.02562 * 9 8 7 39 39 H 1.07999 * 120.03486 * 180.02562 * 10 9 8 40 40 H 0.96998 * 119.99733 * 180.02562 * 16 15 13 41 41 H 1.08005 * 120.03489 * 179.72204 * 21 11 10 42 42 H 1.07992 * 119.96861 * 180.31825 * 22 21 11 43 43 H 0.96695 * 116.99698 * 180.02562 * 27 25 23 44 44 H 1.08999 * 109.50864 * 299.24010 * 28 23 6 45 45 H 1.09001 * 109.53930 * 179.13630 * 28 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0417 -0.7244 -1.2481 5 6 1.5781 -2.1824 -1.2118 6 7 2.0951 -2.8318 -0.0005 7 6 1.7863 -4.2680 -0.0005 8 6 2.5382 -4.9435 -1.1183 9 6 3.8043 -5.4510 -0.8902 10 6 4.4957 -6.0711 -1.9124 11 6 3.9185 -6.1842 -3.1704 12 8 4.5954 -6.7937 -4.1771 13 6 5.8665 -7.1649 -3.9231 14 1 6.2749 -7.0483 -2.9301 15 6 6.6491 -7.6965 -4.9366 16 7 6.1517 -7.8382 -6.1462 17 14 8.4098 -8.2115 -4.5846 18 1 8.7256 -7.9516 -3.1570 19 1 8.5684 -9.6601 -4.8703 20 1 9.3351 -7.4328 -5.4464 21 6 2.6496 -5.6679 -3.3979 22 6 1.9606 -5.0547 -2.3700 23 6 1.5793 -2.1826 1.2115 24 1 0.4899 -2.2172 1.2062 25 6 2.0987 -2.9050 2.4277 26 8 3.0786 -3.6066 2.3412 27 8 1.4727 -2.7690 3.6073 28 6 2.0431 -0.7247 1.2475 29 1 -0.3633 -1.0276 0.0024 30 1 -0.3633 0.5158 0.8888 31 1 -0.3634 0.5118 -0.8912 32 1 3.1310 -0.6894 -1.2683 33 1 1.6448 -0.2383 -2.1394 34 1 1.9528 -2.7046 -2.0921 35 1 0.4886 -2.2168 -1.2055 36 1 0.7154 -4.4094 -0.1458 37 1 2.0843 -4.7038 0.9530 38 1 4.2526 -5.3631 0.0884 39 1 5.4843 -6.4675 -1.7336 40 1 6.6991 -8.2105 -6.8552 41 1 2.1998 -5.7504 -4.3764 42 1 0.9717 -4.6576 -2.5449 43 1 1.8430 -3.2515 4.3590 44 1 3.1323 -0.6896 1.2666 45 1 1.6476 -0.2383 2.1393 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594423899.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:02 Heat of formation + Delta-G solvation = -89.276754 kcal Electronic energy + Delta-G solvation = -27182.152076 eV Core-core repulsion = 23358.216452 eV Total energy + Delta-G solvation = -3823.935624 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.98744 -39.23122 -38.70092 -36.71586 -36.24870 -34.35540 -32.26262 -31.59183 -30.20206 -29.82249 -27.73169 -25.79091 -25.14855 -24.47772 -22.94254 -21.80149 -21.28883 -20.26042 -18.84069 -18.23415 -17.91211 -17.14060 -16.89881 -15.97939 -15.66196 -15.16776 -14.70880 -14.54450 -14.46763 -14.28958 -14.08460 -13.75329 -13.65937 -13.48329 -13.31550 -12.84181 -12.60362 -12.56511 -12.26945 -11.90968 -11.83280 -11.64894 -11.47026 -11.34649 -11.22098 -11.11117 -10.88973 -10.76294 -10.66617 -10.53385 -10.40083 -10.28706 -10.13810 -9.26285 -8.79546 -8.29976 -8.08344 -7.12094 -6.41410 -3.99766 2.04579 2.25973 2.34467 2.72254 3.15031 3.17120 3.22694 3.85842 4.00635 4.47408 4.55915 4.63143 4.71372 4.89552 4.92699 5.09079 5.13830 5.17097 5.24154 5.30390 5.37467 5.41915 5.45622 5.52846 5.65816 5.71412 5.76422 5.78625 5.87867 5.90847 5.95126 6.00342 6.14465 6.21733 6.27806 6.32995 6.50418 6.76092 6.92512 6.98904 7.04011 7.13568 7.31680 7.50073 7.51662 7.77625 7.89358 8.04618 9.04854 9.75416 10.76856 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.019070 B = 0.002982 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.905582 B = 9388.473301 C = 9979.185450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.091 4.091 3 H 0.077 0.923 4 C -0.116 4.116 5 C 0.055 3.945 6 N -0.513 5.513 7 C 0.102 3.898 8 C -0.175 4.175 9 C -0.043 4.043 10 C -0.235 4.235 11 C 0.156 3.844 12 O -0.180 6.180 13 C -0.390 4.390 14 H 0.093 0.907 15 C 0.038 3.962 16 N -0.864 5.864 17 Si 0.940 3.060 18 H -0.266 1.266 19 H -0.276 1.276 20 H -0.276 1.276 21 C -0.195 4.195 22 C -0.070 4.070 23 C 0.097 3.903 24 H 0.073 0.927 25 C 0.475 3.525 26 O -0.485 6.485 27 O -0.522 6.522 28 C -0.101 4.101 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.095 0.905 35 H 0.035 0.965 36 H 0.030 0.970 37 H 0.084 0.916 38 H 0.110 0.890 39 H 0.126 0.874 40 H 0.269 0.731 41 H 0.115 0.885 42 H 0.106 0.894 43 H 0.409 0.591 44 H 0.079 0.921 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.513 14.610 15.504 24.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.109 4.109 3 H 0.095 0.905 4 C -0.153 4.153 5 C -0.072 4.072 6 N -0.239 5.239 7 C -0.024 4.024 8 C -0.176 4.176 9 C -0.062 4.062 10 C -0.254 4.254 11 C 0.103 3.897 12 O -0.083 6.083 13 C -0.466 4.466 14 H 0.110 0.890 15 C -0.165 4.165 16 N -0.499 5.499 17 Si 0.765 3.235 18 H -0.191 1.191 19 H -0.202 1.202 20 H -0.202 1.202 21 C -0.214 4.214 22 C -0.089 4.089 23 C -0.013 4.013 24 H 0.091 0.909 25 C 0.316 3.684 26 O -0.370 6.370 27 O -0.334 6.334 28 C -0.139 4.139 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.113 0.887 35 H 0.053 0.947 36 H 0.048 0.952 37 H 0.102 0.898 38 H 0.128 0.872 39 H 0.143 0.857 40 H 0.079 0.921 41 H 0.133 0.867 42 H 0.124 0.876 43 H 0.268 0.732 44 H 0.098 0.902 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.872 14.520 14.692 23.343 hybrid contribution 0.339 -0.752 0.724 1.098 sum -10.533 13.768 15.416 23.198 Atomic orbital electron populations 1.21970 0.95310 1.01956 1.01832 1.21149 0.95721 0.99407 0.94633 0.90466 1.21677 1.02129 0.94467 0.97064 1.22243 0.96936 0.94795 0.93255 1.61807 1.59571 1.02873 0.99667 1.21034 0.96146 0.86019 0.99176 1.18938 0.96855 1.07464 0.94352 1.20627 0.93117 0.94654 0.97820 1.21177 1.02346 1.08445 0.93480 1.19389 0.91816 0.90309 0.88226 1.83974 1.25803 1.64474 1.34047 1.21387 0.85617 1.41990 0.97601 0.89006 1.25278 0.99897 0.96896 0.94475 1.70052 1.36878 1.41928 1.01085 0.85656 0.80564 0.78441 0.78842 1.19066 1.20196 1.20152 1.20142 0.94890 1.06740 0.99624 1.20472 0.98045 0.98199 0.92190 1.21185 0.98535 0.94663 0.86903 0.90929 1.23393 0.81482 0.79362 0.84185 1.90754 1.25164 1.36200 1.84897 1.84522 1.58766 1.69849 1.20244 1.21595 1.02395 0.91112 0.98800 0.92533 0.92623 0.92369 0.90633 0.91171 0.88701 0.94713 0.95212 0.89822 0.87212 0.85659 0.92144 0.86674 0.87572 0.73215 0.90233 0.90657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 8.62 37.16 0.32 -0.77 16 2 C -0.09 -0.73 3.21 -90.50 -0.29 -1.03 16 3 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 4 C -0.12 -1.15 5.60 -26.65 -0.15 -1.30 16 5 C 0.05 0.65 4.91 -3.83 -0.02 0.63 16 6 N -0.51 -6.79 4.24 -229.52 -0.97 -7.76 16 7 C 0.10 1.51 4.70 -4.98 -0.02 1.49 16 8 C -0.17 -3.12 4.90 -104.58 -0.51 -3.63 16 9 C -0.04 -0.87 9.69 -39.61 -0.38 -1.25 16 10 C -0.24 -5.35 9.17 -39.39 -0.36 -5.71 16 11 C 0.16 3.86 6.65 -39.11 -0.26 3.60 16 12 O -0.18 -5.22 9.76 0.02 0.00 -5.22 16 13 C -0.39 -11.12 9.49 30.88 0.29 -10.83 16 14 H 0.09 2.45 5.20 -52.49 -0.27 2.18 16 15 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 16 N -0.86 -25.68 13.67 55.48 0.76 -24.92 16 17 Si 0.94 20.96 29.55 -169.99 -5.02 15.94 16 18 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 19 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 20 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 21 C -0.19 -4.15 9.99 -39.39 -0.39 -4.55 16 22 C -0.07 -1.26 7.87 -39.61 -0.31 -1.57 16 23 C 0.10 1.04 2.11 -68.88 -0.15 0.90 16 24 H 0.07 0.70 6.51 -51.93 -0.34 0.36 16 25 C 0.48 5.50 6.63 36.00 0.24 5.74 16 26 O -0.49 -7.34 15.39 -18.75 -0.29 -7.63 16 27 O -0.52 -4.36 13.42 -39.27 -0.53 -4.89 16 28 C -0.10 -0.91 4.86 -26.65 -0.13 -1.04 16 29 H 0.06 0.44 4.93 -51.93 -0.26 0.18 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.09 1.32 5.75 -51.93 -0.30 1.02 16 35 H 0.03 0.37 6.52 -51.93 -0.34 0.03 16 36 H 0.03 0.40 8.06 -51.93 -0.42 -0.02 16 37 H 0.08 1.30 5.36 -51.93 -0.28 1.02 16 38 H 0.11 2.09 8.06 -52.49 -0.42 1.66 16 39 H 0.13 2.88 5.64 -52.49 -0.30 2.59 16 40 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 41 H 0.12 2.37 8.06 -52.48 -0.42 1.94 16 42 H 0.11 1.58 7.95 -52.49 -0.42 1.16 16 43 H 0.41 1.79 9.10 45.56 0.41 2.21 16 44 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 357.69 15.07 5.39 5.39 Total: -1.00 -33.17 357.69 -8.33 -41.50 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -5.44 Total: 5.93 kcal Atomic # 6 Polarization: -16.11 SS G_CDS: -2.22 Total: -18.34 kcal Atomic # 7 Polarization: -32.46 SS G_CDS: -0.22 Total: -32.68 kcal Atomic # 8 Polarization: -16.92 SS G_CDS: -0.82 Total: -17.74 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.17 -8.33 -41.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594423899.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.779 kcal (2) G-P(sol) polarization free energy of solvation -33.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds