Wall clock time and date at job start Tue Mar 31 2020 13:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.51976 * 2 1 4 4 C 1.53113 * 109.52539 * 239.87070 * 2 1 3 5 5 C 1.53039 * 109.27639 * 297.68293 * 4 2 1 6 6 N 1.46850 * 109.52569 * 300.82186 * 5 4 2 7 7 C 1.46898 * 111.00009 * 185.83893 * 6 5 4 8 8 C 1.50698 * 109.47301 * 66.04189 * 7 6 5 9 9 C 1.38304 * 119.92786 * 89.99924 * 8 7 6 10 10 C 1.38103 * 120.06873 * 179.97438 * 9 8 7 11 11 C 1.38878 * 119.93137 * 0.02562 * 10 9 8 12 12 O 1.35751 * 120.07119 * 180.02562 * 11 10 9 13 13 C 1.34838 * 116.99901 * 354.46592 * 12 11 10 14 14 H 1.07999 * 119.99562 * 5.05950 * 13 12 11 15 15 C 1.38647 * 120.00139 * 185.05303 * 13 12 11 16 16 N 1.31560 * 119.99842 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00237 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47007 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47328 * 119.99910 * 17 15 13 20 20 H 1.48502 * 109.47203 * 240.00460 * 17 15 13 21 21 C 1.38873 * 119.86115 * 0.28389 * 11 10 9 22 22 C 1.38111 * 119.93256 * 359.40091 * 21 11 10 23 23 C 1.46844 * 111.19820 * 61.73958 * 6 5 4 24 24 H 1.09003 * 109.45795 * 58.27272 * 23 6 5 25 25 C 1.50695 * 109.46083 * 178.24595 * 23 6 5 26 26 O 1.20823 * 120.00114 * 19.99753 * 25 23 6 27 27 O 1.34235 * 119.99712 * 200.00596 * 25 23 6 28 28 C 1.53034 * 109.52396 * 298.25922 * 23 6 5 29 29 H 1.08997 * 109.47178 * 180.13376 * 1 2 3 30 30 H 1.08998 * 109.46996 * 300.12735 * 1 2 3 31 31 H 1.09000 * 109.47247 * 60.13293 * 1 2 3 32 32 H 1.09000 * 109.50798 * 177.74685 * 4 2 1 33 33 H 1.08999 * 109.50484 * 57.62427 * 4 2 1 34 34 H 1.09003 * 109.46122 * 180.80306 * 5 4 2 35 35 H 1.09006 * 109.45199 * 60.83016 * 5 4 2 36 36 H 1.08997 * 109.47152 * 306.04901 * 7 6 5 37 37 H 1.08994 * 109.47427 * 186.04375 * 7 6 5 38 38 H 1.08000 * 119.97029 * 0.02562 * 9 8 7 39 39 H 1.07999 * 120.03486 * 180.02562 * 10 9 8 40 40 H 0.96998 * 119.99733 * 180.02562 * 16 15 13 41 41 H 1.08005 * 120.03489 * 179.72204 * 21 11 10 42 42 H 1.07992 * 119.96861 * 180.31825 * 22 21 11 43 43 H 0.96695 * 116.99698 * 180.02562 * 27 25 23 44 44 H 1.08999 * 109.50864 * 299.24010 * 28 23 6 45 45 H 1.09001 * 109.53930 * 179.13630 * 28 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0417 -0.7244 -1.2481 5 6 1.5781 -2.1824 -1.2118 6 7 2.0951 -2.8318 -0.0005 7 6 1.7863 -4.2680 -0.0005 8 6 2.5382 -4.9435 -1.1183 9 6 3.8043 -5.4510 -0.8902 10 6 4.4957 -6.0711 -1.9124 11 6 3.9185 -6.1842 -3.1704 12 8 4.5954 -6.7937 -4.1771 13 6 5.8665 -7.1649 -3.9231 14 1 6.2749 -7.0483 -2.9301 15 6 6.6491 -7.6965 -4.9366 16 7 6.1517 -7.8382 -6.1462 17 14 8.4098 -8.2115 -4.5846 18 1 8.7256 -7.9516 -3.1570 19 1 8.5684 -9.6601 -4.8703 20 1 9.3351 -7.4328 -5.4464 21 6 2.6496 -5.6679 -3.3979 22 6 1.9606 -5.0547 -2.3700 23 6 1.5793 -2.1826 1.2115 24 1 0.4899 -2.2172 1.2062 25 6 2.0987 -2.9050 2.4277 26 8 3.0786 -3.6066 2.3412 27 8 1.4727 -2.7690 3.6073 28 6 2.0431 -0.7247 1.2475 29 1 -0.3633 -1.0276 0.0024 30 1 -0.3633 0.5158 0.8888 31 1 -0.3634 0.5118 -0.8912 32 1 3.1310 -0.6894 -1.2683 33 1 1.6448 -0.2383 -2.1394 34 1 1.9528 -2.7046 -2.0921 35 1 0.4886 -2.2168 -1.2055 36 1 0.7154 -4.4094 -0.1458 37 1 2.0843 -4.7038 0.9530 38 1 4.2526 -5.3631 0.0884 39 1 5.4843 -6.4675 -1.7336 40 1 6.6991 -8.2105 -6.8552 41 1 2.1998 -5.7504 -4.3764 42 1 0.9717 -4.6576 -2.5449 43 1 1.8430 -3.2515 4.3590 44 1 3.1323 -0.6896 1.2666 45 1 1.6476 -0.2383 2.1393 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594423899.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:01 Heat of formation + Delta-G solvation = -111.646996 kcal Electronic energy + Delta-G solvation = -27183.122122 eV Core-core repulsion = 23358.216452 eV Total energy + Delta-G solvation = -3824.905670 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.89283 -40.77779 -39.81136 -38.34350 -37.11309 -35.42896 -34.25939 -32.49045 -31.84453 -31.21484 -28.69137 -27.48522 -26.26798 -25.58745 -24.10282 -23.41614 -22.20224 -21.75534 -19.88334 -19.54825 -19.04578 -18.83192 -17.99633 -16.99737 -16.62250 -16.43210 -16.24427 -16.16296 -15.53133 -15.49304 -15.24090 -15.10820 -15.00350 -14.68631 -14.39799 -14.32653 -14.04889 -13.69467 -13.58651 -13.12810 -12.97349 -12.75043 -12.59645 -12.49131 -12.39550 -12.33469 -12.21733 -12.11997 -11.93967 -11.91786 -11.52004 -11.19181 -11.16457 -11.03831 -10.79552 -9.76661 -9.27082 -8.89693 -8.48170 -6.15985 0.59127 0.66018 1.17938 1.33823 1.41712 1.52046 1.95379 2.16969 2.68841 2.98178 3.27262 3.51050 3.73009 3.82310 3.93019 3.99557 4.04887 4.14396 4.18001 4.25428 4.36539 4.41126 4.45523 4.57796 4.58854 4.65398 4.79393 4.81532 4.84972 4.91944 4.98005 5.07327 5.13146 5.15159 5.24328 5.28811 5.32347 5.37335 5.54145 5.55371 5.62485 5.71639 5.81662 5.99167 6.02604 6.11013 6.22035 6.96887 7.02872 7.77153 8.75203 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.019070 B = 0.002982 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.905582 B = 9388.473301 C = 9979.185450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.085 4.085 3 H 0.090 0.910 4 C -0.115 4.115 5 C 0.054 3.946 6 N -0.532 5.532 7 C 0.107 3.893 8 C -0.149 4.149 9 C -0.050 4.050 10 C -0.244 4.244 11 C 0.117 3.883 12 O -0.231 6.231 13 C -0.414 4.414 14 H 0.097 0.903 15 C -0.021 4.021 16 N -0.919 5.919 17 Si 1.017 2.983 18 H -0.255 1.255 19 H -0.266 1.266 20 H -0.266 1.266 21 C -0.200 4.200 22 C -0.054 4.054 23 C 0.096 3.904 24 H 0.095 0.905 25 C 0.480 3.520 26 O -0.529 6.529 27 O -0.510 6.510 28 C -0.098 4.098 29 H 0.052 0.948 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.083 0.917 34 H 0.070 0.930 35 H 0.056 0.944 36 H 0.055 0.945 37 H 0.078 0.922 38 H 0.119 0.881 39 H 0.113 0.887 40 H 0.273 0.727 41 H 0.118 0.882 42 H 0.149 0.851 43 H 0.427 0.573 44 H 0.061 0.939 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.468 16.728 17.977 28.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.103 4.103 3 H 0.108 0.892 4 C -0.153 4.153 5 C -0.073 4.073 6 N -0.259 5.259 7 C -0.020 4.020 8 C -0.150 4.150 9 C -0.068 4.068 10 C -0.263 4.263 11 C 0.067 3.933 12 O -0.137 6.137 13 C -0.490 4.490 14 H 0.115 0.885 15 C -0.219 4.219 16 N -0.557 5.557 17 Si 0.837 3.163 18 H -0.179 1.179 19 H -0.191 1.191 20 H -0.191 1.191 21 C -0.220 4.220 22 C -0.073 4.073 23 C -0.013 4.013 24 H 0.112 0.888 25 C 0.323 3.677 26 O -0.418 6.418 27 O -0.323 6.323 28 C -0.136 4.136 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.101 0.899 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.096 0.904 38 H 0.137 0.863 39 H 0.131 0.869 40 H 0.082 0.918 41 H 0.136 0.864 42 H 0.167 0.833 43 H 0.289 0.711 44 H 0.080 0.920 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -12.879 16.676 17.232 27.219 hybrid contribution 0.677 -1.203 0.218 1.398 sum -12.201 15.472 17.450 26.320 Atomic orbital electron populations 1.21944 0.93983 1.01965 1.02840 1.21127 0.96676 0.99561 0.92955 0.89200 1.21668 1.00915 0.93798 0.98872 1.22256 0.98060 0.95354 0.91619 1.61639 1.60911 1.02025 1.01308 1.20950 0.96829 0.87058 0.97158 1.19415 0.95684 1.04521 0.95371 1.20792 0.94061 0.94539 0.97425 1.21195 1.02234 1.09132 0.93764 1.19903 0.93138 0.91891 0.88397 1.83936 1.26453 1.67278 1.36062 1.21821 0.86210 1.42671 0.98272 0.88544 1.26546 1.04721 0.96580 0.94005 1.70183 1.39057 1.44123 1.02379 0.84552 0.74189 0.78366 0.79236 1.17893 1.19102 1.19120 1.20436 0.93965 1.06601 1.00955 1.20852 0.99278 0.96191 0.90951 1.21310 0.99561 0.95059 0.85368 0.88771 1.23572 0.80693 0.78388 0.85086 1.90750 1.27108 1.38242 1.85667 1.84474 1.58075 1.69705 1.20073 1.21618 1.01402 0.90257 1.00304 0.92912 0.91329 0.91782 0.92757 0.89877 0.91182 0.92587 0.92720 0.90376 0.86274 0.86936 0.91788 0.86431 0.83300 0.71086 0.92046 0.88471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 8.62 71.98 0.62 -0.86 16 2 C -0.08 -1.08 3.21 -10.71 -0.03 -1.12 16 3 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 4 C -0.11 -2.01 5.60 30.65 0.17 -1.84 16 5 C 0.05 1.12 4.91 86.33 0.42 1.54 16 6 N -0.53 -12.70 4.24 -880.06 -3.73 -16.43 16 7 C 0.11 2.83 4.70 85.56 0.40 3.24 16 8 C -0.15 -5.06 4.90 -19.83 -0.10 -5.16 16 9 C -0.05 -1.97 9.69 22.25 0.22 -1.76 16 10 C -0.24 -11.56 9.17 22.39 0.21 -11.36 16 11 C 0.12 6.07 6.65 22.58 0.15 6.22 16 12 O -0.23 -14.30 9.76 -22.83 -0.22 -14.52 16 13 C -0.41 -24.99 9.49 67.92 0.64 -24.34 16 14 H 0.10 5.47 5.20 -2.91 -0.02 5.45 16 15 C -0.02 -1.23 5.49 84.83 0.47 -0.76 16 16 N -0.92 -57.37 13.67 21.61 0.30 -57.07 16 17 Si 1.02 44.32 29.55 68.60 2.03 46.35 16 18 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 19 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 20 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 21 C -0.20 -8.67 9.99 22.39 0.22 -8.44 16 22 C -0.05 -1.85 7.87 22.25 0.18 -1.67 16 23 C 0.10 1.75 2.11 44.19 0.09 1.84 16 24 H 0.09 1.36 6.51 -2.39 -0.02 1.35 16 25 C 0.48 9.86 6.63 71.23 0.47 10.33 16 26 O -0.53 -15.26 15.39 21.97 0.34 -14.92 16 27 O -0.51 -6.81 13.42 -51.47 -0.69 -7.50 16 28 C -0.10 -1.46 4.86 30.65 0.15 -1.31 16 29 H 0.05 0.56 4.93 -2.39 -0.01 0.55 16 30 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.05 1.17 8.14 -2.39 -0.02 1.16 16 33 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.07 1.80 5.75 -2.39 -0.01 1.78 16 35 H 0.06 0.94 6.52 -2.38 -0.02 0.92 16 36 H 0.05 1.21 8.06 -2.39 -0.02 1.19 16 37 H 0.08 2.24 5.36 -2.39 -0.01 2.23 16 38 H 0.12 4.52 8.06 -2.91 -0.02 4.50 16 39 H 0.11 5.51 5.64 -2.91 -0.02 5.49 16 40 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 41 H 0.12 4.94 8.06 -2.91 -0.02 4.92 16 42 H 0.15 3.83 7.95 -2.91 -0.02 3.80 16 43 H 0.43 2.46 9.10 -74.06 -0.67 1.79 16 44 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -77.36 357.69 2.64 -74.71 By element: Atomic # 1 Polarization: 24.48 SS G_CDS: 0.35 Total: 24.83 kcal Atomic # 6 Polarization: -39.73 SS G_CDS: 4.28 Total: -35.45 kcal Atomic # 7 Polarization: -70.06 SS G_CDS: -3.44 Total: -73.50 kcal Atomic # 8 Polarization: -36.37 SS G_CDS: -0.58 Total: -36.95 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -77.36 2.64 -74.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594423899.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.932 kcal (2) G-P(sol) polarization free energy of solvation -77.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds