Wall clock time and date at job start Tue Mar 31 2020 13:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.57795 * 2 1 4 4 C 1.53124 * 109.52198 * 120.15820 * 2 1 3 5 5 C 1.53035 * 109.28000 * 62.24753 * 4 2 1 6 6 N 1.46844 * 109.52142 * 59.18205 * 5 4 2 7 7 C 1.46904 * 111.00017 * 174.15858 * 6 5 4 8 8 C 1.50707 * 109.46787 * 66.04858 * 7 6 5 9 9 C 1.38294 * 119.93175 * 90.00024 * 8 7 6 10 10 C 1.38102 * 120.07016 * 180.02562 * 9 8 7 11 11 C 1.38880 * 119.92770 * 0.02562 * 10 9 8 12 12 O 1.35748 * 120.06657 * 179.97438 * 11 10 9 13 13 C 1.34830 * 117.00171 * 5.52849 * 12 11 10 14 14 H 1.07998 * 120.00312 * 354.95212 * 13 12 11 15 15 C 1.38657 * 119.99975 * 174.94158 * 13 12 11 16 16 N 1.31554 * 119.99871 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99903 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47334 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47090 * 240.00271 * 17 15 13 20 20 H 1.48507 * 109.47091 * 120.00277 * 17 15 13 21 21 C 1.38881 * 119.86194 * 0.24922 * 11 10 9 22 22 C 1.38094 * 119.92834 * 359.49425 * 21 11 10 23 23 C 1.46842 * 111.20190 * 298.25603 * 6 5 4 24 24 H 1.09002 * 109.46339 * 301.73149 * 23 6 5 25 25 C 1.50694 * 109.46594 * 181.75844 * 23 6 5 26 26 O 1.20825 * 120.00299 * 339.99953 * 25 23 6 27 27 O 1.34238 * 119.99962 * 160.00115 * 25 23 6 28 28 C 1.53038 * 109.52122 * 61.74030 * 23 6 5 29 29 H 1.08996 * 109.47674 * 299.84718 * 1 2 3 30 30 H 1.09005 * 109.46924 * 59.84867 * 1 2 3 31 31 H 1.08999 * 109.47251 * 179.83994 * 1 2 3 32 32 H 1.09001 * 109.49884 * 302.30679 * 4 2 1 33 33 H 1.08991 * 109.50504 * 182.19213 * 4 2 1 34 34 H 1.09006 * 109.46330 * 299.16748 * 5 4 2 35 35 H 1.09002 * 109.46262 * 179.20009 * 5 4 2 36 36 H 1.08997 * 109.47165 * 306.04596 * 7 6 5 37 37 H 1.08999 * 109.47116 * 186.04688 * 7 6 5 38 38 H 1.08002 * 119.97005 * 0.04250 * 9 8 7 39 39 H 1.07996 * 120.03498 * 179.97438 * 10 9 8 40 40 H 0.97000 * 120.00340 * 0.02562 * 16 15 13 41 41 H 1.07996 * 120.03114 * 179.72839 * 21 11 10 42 42 H 1.08009 * 119.96433 * 180.27590 * 22 21 11 43 43 H 0.96698 * 116.99666 * 179.97438 * 27 25 23 44 44 H 1.09003 * 109.50523 * 180.88173 * 28 23 6 45 45 H 1.08997 * 109.53431 * 60.78298 * 28 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0417 -0.7251 1.2479 5 6 1.5765 -2.1826 1.2118 6 7 2.0924 -2.8324 0.0002 7 6 1.7823 -4.2683 0.0002 8 6 0.2907 -4.4601 -0.0975 9 6 -0.3117 -4.5653 -1.3379 10 6 -1.6784 -4.7405 -1.4308 11 6 -2.4480 -4.8104 -0.2769 12 8 -3.7918 -4.9821 -0.3649 13 6 -4.3027 -5.1922 -1.5948 14 1 -3.6620 -5.1370 -2.4625 15 6 -5.6508 -5.4794 -1.7457 16 7 -6.4314 -5.5463 -0.6888 17 14 -6.3586 -5.7712 -3.4496 18 1 -5.2806 -5.6406 -4.4625 19 1 -7.4196 -4.7689 -3.7232 20 1 -6.9383 -7.1368 -3.5176 21 6 -1.8408 -4.6987 0.9671 22 6 -0.4731 -4.5289 1.0534 23 6 1.5766 -2.1827 -1.2115 24 1 0.4871 -2.2162 -1.2059 25 6 2.0947 -2.9055 -2.4281 26 8 3.0740 -3.6080 -2.3421 27 8 1.4682 -2.7688 -3.6074 28 6 2.0417 -0.7252 -1.2477 29 1 -0.3634 0.5114 0.8913 30 1 -0.3633 0.5162 -0.8887 31 1 -0.3634 -1.0276 -0.0029 32 1 1.6457 -0.2386 2.1393 33 1 3.1309 -0.6910 1.2675 34 1 0.4870 -2.2161 1.2060 35 1 1.9512 -2.7053 2.0919 36 1 2.1468 -4.7187 0.9234 37 1 2.2665 -4.7446 -0.8523 38 1 0.2873 -4.5107 -2.2349 39 1 -2.1483 -4.8222 -2.3998 40 1 -6.0639 -5.3944 0.1959 41 1 -2.4372 -4.7483 1.8661 42 1 0.0003 -4.4464 2.0207 43 1 1.8378 -3.2516 -4.3593 44 1 1.6458 -0.2389 -2.1393 45 1 3.1309 -0.6906 -1.2677 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594423901.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:06 Heat of formation + Delta-G solvation = -118.670912 kcal Electronic energy + Delta-G solvation = -28181.779865 eV Core-core repulsion = 24356.569615 eV Total energy + Delta-G solvation = -3825.210250 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.16686 -40.88768 -39.91460 -38.44044 -37.18658 -35.53047 -34.27480 -32.58200 -31.86464 -31.26312 -28.68709 -27.17052 -26.56978 -25.52166 -24.16132 -23.42874 -22.61836 -21.76610 -20.31055 -19.61984 -19.14084 -18.74773 -17.93674 -17.21343 -16.84409 -16.56062 -16.26941 -16.05410 -15.76934 -15.66300 -15.35032 -15.32776 -15.07621 -14.77796 -14.51694 -14.35362 -14.08919 -13.66113 -13.15487 -13.11322 -12.99353 -12.82376 -12.69456 -12.51319 -12.39813 -12.38754 -12.18204 -12.02386 -11.95074 -11.92705 -11.57517 -11.34542 -11.24057 -11.07999 -10.78699 -9.93901 -9.40014 -9.08028 -8.97526 -6.28522 0.41197 0.48956 1.10400 1.46294 1.59650 1.73448 1.92320 2.31372 2.67193 2.95659 3.09402 3.27160 3.67992 3.80680 3.83107 3.89364 3.96284 4.03938 4.13401 4.18448 4.28676 4.37383 4.41467 4.49596 4.56384 4.62104 4.75039 4.77687 4.80660 4.88313 4.94402 4.95353 5.07685 5.09944 5.15940 5.18613 5.24003 5.32455 5.40881 5.47973 5.54268 5.58614 5.63804 5.88947 5.95540 6.03675 6.22911 6.81857 6.95779 7.56404 8.46861 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.015581 B = 0.003855 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.648247 B = 7262.060785 C = 7666.858003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.085 4.085 3 H 0.099 0.901 4 C -0.110 4.110 5 C 0.046 3.954 6 N -0.506 5.506 7 C 0.096 3.904 8 C -0.196 4.196 9 C -0.062 4.062 10 C -0.235 4.235 11 C 0.122 3.878 12 O -0.248 6.248 13 C -0.487 4.487 14 H 0.089 0.911 15 C -0.041 4.041 16 N -0.915 5.915 17 Si 1.148 2.852 18 H -0.261 1.261 19 H -0.268 1.268 20 H -0.270 1.270 21 C -0.198 4.198 22 C -0.047 4.047 23 C 0.088 3.912 24 H 0.069 0.931 25 C 0.485 3.515 26 O -0.523 6.523 27 O -0.516 6.516 28 C -0.100 4.100 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.034 0.966 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.036 0.964 35 H 0.094 0.906 36 H 0.102 0.898 37 H 0.080 0.920 38 H 0.115 0.885 39 H 0.114 0.886 40 H 0.261 0.739 41 H 0.119 0.881 42 H 0.153 0.847 43 H 0.427 0.573 44 H 0.082 0.918 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.093 10.630 -0.312 21.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.103 4.103 3 H 0.117 0.883 4 C -0.147 4.147 5 C -0.081 4.081 6 N -0.230 5.230 7 C -0.031 4.031 8 C -0.198 4.198 9 C -0.081 4.081 10 C -0.254 4.254 11 C 0.072 3.928 12 O -0.156 6.156 13 C -0.563 4.563 14 H 0.106 0.894 15 C -0.238 4.238 16 N -0.550 5.550 17 Si 0.964 3.036 18 H -0.185 1.185 19 H -0.193 1.193 20 H -0.195 1.195 21 C -0.218 4.218 22 C -0.066 4.066 23 C -0.021 4.021 24 H 0.087 0.913 25 C 0.328 3.672 26 O -0.412 6.412 27 O -0.329 6.329 28 C -0.138 4.138 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.053 0.947 32 H 0.104 0.896 33 H 0.097 0.903 34 H 0.054 0.946 35 H 0.112 0.888 36 H 0.120 0.880 37 H 0.099 0.901 38 H 0.133 0.867 39 H 0.132 0.868 40 H 0.070 0.930 41 H 0.137 0.863 42 H 0.170 0.830 43 H 0.288 0.712 44 H 0.101 0.899 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 18.154 10.360 -0.607 20.911 hybrid contribution 0.264 -0.481 0.242 0.600 sum 18.418 9.879 -0.365 20.903 Atomic orbital electron populations 1.21970 0.95926 1.00977 1.02379 1.21145 0.94988 1.00279 0.93909 0.88294 1.21669 1.01891 0.93197 0.97977 1.22355 0.98093 0.96067 0.91579 1.62282 1.57838 1.01978 1.00913 1.21281 0.88212 0.88993 1.04661 1.20455 0.98011 1.08677 0.92643 1.20785 0.92791 0.97049 0.97447 1.21163 0.95115 1.11177 0.97934 1.19785 0.83450 0.94339 0.95254 1.83646 1.18240 1.80680 1.32995 1.22606 0.96843 1.54016 0.82846 0.89397 1.28336 0.91506 0.93922 1.10029 1.70655 1.38451 1.45994 0.99854 0.82522 0.75999 0.78105 0.66999 1.18537 1.19298 1.19467 1.20496 0.95931 1.10883 0.94459 1.20897 0.91072 0.95729 0.98866 1.21303 0.98951 0.95475 0.86408 0.91302 1.23448 0.80456 0.78455 0.84848 1.90667 1.26844 1.38076 1.85629 1.84547 1.58328 1.69660 1.20388 1.21647 1.02071 0.89957 1.00080 0.91579 0.92508 0.94686 0.89635 0.90277 0.94596 0.88788 0.87972 0.90138 0.86746 0.86828 0.93009 0.86298 0.82986 0.71163 0.89941 0.90107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.06 8.61 71.98 0.62 -2.44 16 2 C -0.08 -1.36 3.22 -10.71 -0.03 -1.40 16 3 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 4 C -0.11 -1.68 5.60 30.65 0.17 -1.51 16 5 C 0.05 0.90 4.57 86.33 0.39 1.30 16 6 N -0.51 -11.85 4.46 -880.05 -3.92 -15.77 16 7 C 0.10 2.49 5.08 85.56 0.43 2.92 16 8 C -0.20 -6.11 4.05 -19.83 -0.08 -6.19 16 9 C -0.06 -2.23 7.90 22.25 0.18 -2.06 16 10 C -0.23 -10.42 9.17 22.39 0.21 -10.21 16 11 C 0.12 5.98 6.65 22.58 0.15 6.13 16 12 O -0.25 -14.64 9.16 -22.71 -0.21 -14.84 16 13 C -0.49 -28.49 9.49 67.92 0.64 -27.85 16 14 H 0.09 4.86 5.20 -2.91 -0.02 4.84 16 15 C -0.04 -2.37 5.49 84.83 0.47 -1.90 16 16 N -0.92 -56.89 13.70 21.61 0.30 -56.59 16 17 Si 1.15 48.25 29.92 68.60 2.05 50.31 16 18 H -0.26 -9.86 7.11 99.48 0.71 -9.16 16 19 H -0.27 -10.70 7.11 99.48 0.71 -10.00 16 20 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 21 C -0.20 -8.07 9.99 22.39 0.22 -7.84 16 22 C -0.05 -1.50 8.10 22.25 0.18 -1.32 16 23 C 0.09 2.13 1.47 44.19 0.06 2.20 16 24 H 0.07 1.98 4.83 -2.39 -0.01 1.97 16 25 C 0.49 12.36 4.89 71.23 0.35 12.71 16 26 O -0.52 -15.48 15.27 21.97 0.34 -15.14 16 27 O -0.52 -10.99 13.03 -51.49 -0.67 -11.66 16 28 C -0.10 -1.87 4.86 30.65 0.15 -1.72 16 29 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 31 H 0.03 0.88 4.92 -2.39 -0.01 0.87 16 32 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.04 0.84 4.92 -2.38 -0.01 0.83 16 35 H 0.09 1.57 8.06 -2.39 -0.02 1.55 16 36 H 0.10 2.26 8.00 -2.39 -0.02 2.24 16 37 H 0.08 2.34 5.63 -2.39 -0.01 2.33 16 38 H 0.11 3.76 5.93 -2.91 -0.02 3.74 16 39 H 0.11 5.29 5.64 -2.91 -0.02 5.27 16 40 H 0.26 16.92 7.97 -92.71 -0.74 16.18 16 41 H 0.12 4.68 8.06 -2.91 -0.02 4.66 16 42 H 0.15 3.64 8.03 -2.91 -0.02 3.62 16 43 H 0.43 5.32 9.10 -74.06 -0.67 4.64 16 44 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -73.35 349.27 2.39 -70.97 By element: Atomic # 1 Polarization: 31.54 SS G_CDS: 0.39 Total: 31.93 kcal Atomic # 6 Polarization: -43.30 SS G_CDS: 4.11 Total: -39.18 kcal Atomic # 7 Polarization: -68.74 SS G_CDS: -3.63 Total: -72.36 kcal Atomic # 8 Polarization: -41.11 SS G_CDS: -0.54 Total: -41.65 kcal Atomic # 14 Polarization: 48.25 SS G_CDS: 2.05 Total: 50.31 kcal Total: -73.35 2.39 -70.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594423901.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.703 kcal (2) G-P(sol) polarization free energy of solvation -73.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds