Wall clock time and date at job start Tue Mar 31 2020 12:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46854 * 2 1 4 4 C 1.52997 * 109.46729 * 240.00495 * 2 1 3 5 5 H 1.08995 * 109.47735 * 60.00052 * 4 2 1 6 6 C 1.53001 * 109.47072 * 180.02562 * 4 2 1 7 7 N 1.46507 * 109.47089 * 299.99780 * 4 2 1 8 8 C 1.34780 * 119.99908 * 155.00457 * 7 4 2 9 9 O 1.21274 * 120.00105 * 359.97438 * 8 7 4 10 10 C 1.50700 * 119.99667 * 179.97438 * 8 7 4 11 11 O 1.45197 * 109.47032 * 179.97438 * 10 8 7 12 12 C 1.34802 * 117.00036 * 180.02562 * 11 10 8 13 13 O 1.21528 * 120.00126 * 0.02562 * 12 11 10 14 14 C 1.47288 * 119.99782 * 180.02562 * 12 11 10 15 15 C 1.39290 * 120.29171 * 354.20568 * 14 12 11 16 16 C 1.38204 * 120.08934 * 179.97438 * 15 14 12 17 17 C 1.38837 * 120.68218 * 0.02562 * 16 15 14 18 18 C 1.37598 * 120.58398 * 359.97438 * 17 16 15 19 19 C 1.40713 * 119.88596 * 359.74534 * 18 17 16 20 20 C 1.40858 * 120.33506 * 180.25142 * 19 18 17 21 21 H 1.08006 * 120.00129 * 146.08389 * 20 19 18 22 22 C 1.40303 * 119.99763 * 326.08582 * 20 19 18 23 23 N 1.30610 * 119.99950 * 350.69057 * 22 20 19 24 24 Si 1.86802 * 119.99732 * 170.69028 * 22 20 19 25 25 H 1.48499 * 109.47241 * 89.99967 * 24 22 20 26 26 H 1.48498 * 109.47012 * 210.00348 * 24 22 20 27 27 H 1.48501 * 109.47052 * 329.99956 * 24 22 20 28 28 H 1.08996 * 109.47363 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.46677 * 299.99696 * 1 2 3 30 30 H 1.09000 * 109.47494 * 59.99178 * 1 2 3 31 31 H 1.08995 * 109.46969 * 120.00078 * 2 1 3 32 32 H 1.09000 * 109.46942 * 60.00481 * 3 2 1 33 33 H 1.09001 * 109.46623 * 180.02562 * 3 2 1 34 34 H 1.08995 * 109.47397 * 299.99817 * 3 2 1 35 35 H 1.08996 * 109.47085 * 299.99650 * 6 4 2 36 36 H 1.09003 * 109.47516 * 59.99623 * 6 4 2 37 37 H 1.09000 * 109.47296 * 179.97438 * 6 4 2 38 38 H 0.97000 * 119.99565 * 335.00541 * 7 4 2 39 39 H 1.08994 * 109.47463 * 300.00026 * 10 8 7 40 40 H 1.09002 * 109.46913 * 60.00134 * 10 8 7 41 41 H 1.08004 * 119.95535 * 359.95242 * 15 14 12 42 42 H 1.07991 * 119.66158 * 179.97438 * 16 15 14 43 43 H 1.08001 * 119.71171 * 179.97438 * 17 16 15 44 44 H 1.08004 * 120.06101 * 180.02562 * 18 17 16 45 45 H 0.97001 * 119.99534 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 -1.2493 5 1 1.6766 -0.2073 -2.1393 6 6 3.5699 -0.7217 -1.2491 7 7 1.5516 -2.1024 -1.2494 8 6 1.4228 -2.7716 -2.4122 9 8 1.7108 -2.2303 -3.4585 10 6 0.9210 -4.1926 -2.4121 11 8 0.8715 -4.6884 -3.7759 12 6 0.4404 -5.9535 -3.9519 13 8 0.1144 -6.6235 -2.9918 14 6 0.3644 -6.5237 -5.3078 15 6 0.6204 -5.7261 -6.4207 16 6 0.5484 -6.2656 -7.6911 17 6 0.2214 -7.6022 -7.8757 18 6 -0.0368 -8.4154 -6.7961 19 6 0.0354 -7.8928 -5.4916 20 6 -0.2219 -8.7180 -4.3794 21 1 0.3142 -8.5611 -3.4551 22 6 -1.1747 -9.7437 -4.4725 23 7 -1.9505 -9.8213 -5.5204 24 14 -1.3336 -10.9983 -3.0976 25 1 -2.3175 -10.5137 -2.0965 26 1 -1.7959 -12.2927 -3.6598 27 1 -0.0136 -11.1859 -2.4437 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 0.8899 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8899 35 1 3.9337 0.3057 -1.2488 36 1 3.9330 -1.2359 -0.3591 37 1 3.9332 -1.2359 -2.1389 38 1 1.3209 -2.5353 -0.4125 39 1 1.5939 -4.8156 -1.8229 40 1 -0.0781 -4.2251 -1.9776 41 1 0.8751 -4.6846 -6.2908 42 1 0.7478 -5.6409 -8.5491 43 1 0.1693 -8.0074 -8.8755 44 1 -0.2899 -9.4540 -6.9495 45 1 -2.6089 -10.5306 -5.5848 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000022842069.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:19 Heat of formation + Delta-G solvation = -135.140845 kcal Electronic energy + Delta-G solvation = -26288.851569 eV Core-core repulsion = 22462.927129 eV Total energy + Delta-G solvation = -3825.924440 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.50306 -40.72925 -39.08631 -38.14236 -36.98776 -35.62366 -34.40423 -32.10951 -31.63142 -31.18389 -29.43533 -27.74066 -27.34855 -24.84148 -24.13871 -22.91041 -21.69038 -21.49932 -21.11528 -19.41945 -18.63588 -18.19409 -17.60722 -17.38185 -17.24826 -16.84817 -16.01773 -15.93746 -15.45670 -15.38537 -15.14500 -14.76797 -14.52097 -14.45809 -14.34491 -13.98630 -13.62840 -13.51012 -13.43631 -13.09726 -12.94263 -12.87392 -12.86410 -12.60318 -12.48670 -12.35284 -11.99041 -11.97054 -11.78019 -11.69883 -11.56673 -11.47634 -11.19252 -11.02772 -10.71570 -10.18737 -9.53744 -9.34572 -8.74841 -6.46813 0.30090 0.97926 1.36015 1.40589 1.42423 1.48886 1.51824 1.98512 2.19206 2.46861 2.71050 3.56936 3.61397 3.70404 3.93299 4.06263 4.07802 4.10606 4.30555 4.40254 4.40660 4.49428 4.58021 4.59708 4.79468 4.81037 4.81572 4.94402 5.01498 5.02027 5.05071 5.15548 5.16839 5.25546 5.28107 5.34222 5.41965 5.45719 5.53928 5.58193 5.78613 5.97632 6.04771 6.25977 6.40342 6.60059 6.75777 6.85387 7.09831 7.18337 8.22304 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.017416 B = 0.002820 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.348530 B = 9926.790240 C =11100.231596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.094 4.094 3 C -0.147 4.147 4 C 0.144 3.856 5 H 0.065 0.935 6 C -0.163 4.163 7 N -0.704 5.704 8 C 0.523 3.477 9 O -0.562 6.562 10 C 0.042 3.958 11 O -0.354 6.354 12 C 0.508 3.492 13 O -0.535 6.535 14 C -0.276 4.276 15 C -0.041 4.041 16 C -0.240 4.240 17 C -0.082 4.082 18 C -0.173 4.173 19 C 0.120 3.880 20 C -0.450 4.450 21 H 0.088 0.912 22 C 0.033 3.967 23 N -0.811 5.811 24 Si 0.986 3.014 25 H -0.267 1.267 26 H -0.257 1.257 27 H -0.260 1.260 28 H 0.053 0.947 29 H 0.071 0.929 30 H 0.043 0.957 31 H 0.094 0.906 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.050 0.950 35 H 0.085 0.915 36 H 0.072 0.928 37 H 0.033 0.967 38 H 0.417 0.583 39 H 0.111 0.889 40 H 0.109 0.891 41 H 0.117 0.883 42 H 0.130 0.870 43 H 0.128 0.872 44 H 0.111 0.889 45 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.191 14.619 12.096 19.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.113 4.113 3 C -0.204 4.204 4 C 0.040 3.960 5 H 0.083 0.917 6 C -0.221 4.221 7 N -0.358 5.358 8 C 0.309 3.691 9 O -0.440 6.440 10 C -0.035 4.035 11 O -0.271 6.271 12 C 0.359 3.641 13 O -0.428 6.428 14 C -0.279 4.279 15 C -0.059 4.059 16 C -0.259 4.259 17 C -0.101 4.101 18 C -0.192 4.192 19 C 0.117 3.883 20 C -0.478 4.478 21 H 0.106 0.894 22 C -0.184 4.184 23 N -0.437 5.437 24 Si 0.806 3.194 25 H -0.192 1.192 26 H -0.180 1.180 27 H -0.184 1.184 28 H 0.073 0.927 29 H 0.090 0.910 30 H 0.062 0.938 31 H 0.112 0.888 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.069 0.931 35 H 0.104 0.896 36 H 0.091 0.909 37 H 0.052 0.948 38 H 0.254 0.746 39 H 0.129 0.871 40 H 0.127 0.873 41 H 0.135 0.865 42 H 0.148 0.852 43 H 0.146 0.854 44 H 0.129 0.871 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 5.112 14.716 11.540 19.387 hybrid contribution -0.448 -0.812 0.716 1.171 sum 4.664 13.904 12.255 19.112 Atomic orbital electron populations 1.21878 0.94858 1.02016 1.02080 1.21363 0.96112 0.97288 0.96499 1.21871 1.01869 0.94194 1.02492 1.21162 0.94508 0.80614 0.99687 0.91710 1.22221 0.94620 1.03399 1.01836 1.45789 1.66990 1.14878 1.08185 1.20140 0.77426 0.87163 0.84408 1.90713 1.50507 1.69754 1.33062 1.22765 1.04643 0.92991 0.83124 1.86628 1.79019 1.30927 1.30571 1.21350 0.73815 0.78364 0.90551 1.90699 1.48264 1.60634 1.43193 1.19065 1.24923 0.94761 0.89140 1.21116 0.94324 0.98106 0.92396 1.20810 1.12703 0.96165 0.96230 1.21245 0.96454 0.94038 0.98318 1.21316 1.06037 0.99779 0.92032 1.17822 0.86798 0.89446 0.94241 1.20217 1.17917 1.10492 0.99179 0.89381 1.26910 0.93608 0.98540 0.99339 1.69722 1.14863 1.30050 1.29026 0.85151 0.79702 0.76827 0.77729 1.19179 1.18035 1.18372 0.92743 0.91048 0.93758 0.88780 0.91028 0.91307 0.93057 0.89586 0.90882 0.94796 0.74554 0.87122 0.87314 0.86534 0.85163 0.85405 0.87118 0.89472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.04 71.98 0.65 -1.22 16 2 C -0.09 -1.05 2.55 -10.79 -0.03 -1.07 16 3 C -0.15 -1.38 8.84 71.98 0.64 -0.74 16 4 C 0.14 2.52 2.16 44.99 0.10 2.62 16 5 H 0.06 1.49 7.58 -2.39 -0.02 1.47 16 6 C -0.16 -2.67 9.13 71.98 0.66 -2.01 16 7 N -0.70 -13.58 4.38 -442.53 -1.94 -15.52 16 8 C 0.52 15.42 7.87 87.66 0.69 16.11 16 9 O -0.56 -21.81 16.16 15.79 0.26 -21.55 16 10 C 0.04 1.33 5.96 71.24 0.42 1.76 16 11 O -0.35 -15.33 9.02 -50.75 -0.46 -15.79 16 12 C 0.51 25.26 7.84 70.20 0.55 25.81 16 13 O -0.54 -27.90 13.39 19.74 0.26 -27.64 16 14 C -0.28 -14.47 5.92 -19.71 -0.12 -14.58 16 15 C -0.04 -1.92 9.60 22.51 0.22 -1.71 16 16 C -0.24 -10.30 10.03 22.41 0.22 -10.07 16 17 C -0.08 -3.64 10.01 22.26 0.22 -3.41 16 18 C -0.17 -8.86 8.62 22.72 0.20 -8.66 16 19 C 0.12 6.67 5.51 -21.10 -0.12 6.55 16 20 C -0.45 -25.09 7.67 23.41 0.18 -24.91 16 21 H 0.09 5.05 5.93 -2.91 -0.02 5.04 16 22 C 0.03 1.67 5.25 85.38 0.45 2.12 16 23 N -0.81 -41.70 11.13 21.89 0.24 -41.45 16 24 Si 0.99 39.20 29.57 68.60 2.03 41.23 16 25 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 26 H -0.26 -9.28 7.11 99.48 0.71 -8.57 16 27 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 28 H 0.05 0.70 7.44 -2.39 -0.02 0.69 16 29 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 30 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.07 0.56 6.43 -2.39 -0.02 0.54 16 34 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.09 1.10 6.43 -2.39 -0.02 1.08 16 36 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.42 5.29 8.39 -92.71 -0.78 4.51 16 39 H 0.11 3.10 8.14 -2.39 -0.02 3.08 16 40 H 0.11 3.09 8.14 -2.39 -0.02 3.07 16 41 H 0.12 5.12 7.62 -2.91 -0.02 5.09 16 42 H 0.13 4.64 8.06 -2.92 -0.02 4.61 16 43 H 0.13 4.72 8.06 -2.91 -0.02 4.70 16 44 H 0.11 5.78 6.58 -2.91 -0.02 5.76 16 45 H 0.29 13.50 8.29 -92.71 -0.77 12.73 16 Total: -1.00 -70.48 375.06 5.56 -64.93 By element: Atomic # 1 Polarization: 29.01 SS G_CDS: 0.23 Total: 29.24 kcal Atomic # 6 Polarization: -18.37 SS G_CDS: 4.93 Total: -13.44 kcal Atomic # 7 Polarization: -55.28 SS G_CDS: -1.70 Total: -56.97 kcal Atomic # 8 Polarization: -65.04 SS G_CDS: 0.06 Total: -64.98 kcal Atomic # 14 Polarization: 39.20 SS G_CDS: 2.03 Total: 41.23 kcal Total: -70.48 5.56 -64.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000022842069.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.213 kcal (2) G-P(sol) polarization free energy of solvation -70.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds