Wall clock time and date at job start Tue Mar 31 2020 12:56:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.31001 * 1
3 3 C 1.50697 * 119.99741 * 2 1
4 4 C 1.50702 * 109.47339 * 125.00022 * 3 2 1
5 5 C 1.38259 * 119.92384 * 270.02029 * 4 3 2
6 6 C 1.38241 * 120.14523 * 179.74402 * 5 4 3
7 7 C 1.38564 * 119.99646 * 0.50417 * 6 5 4
8 8 O 1.35998 * 120.07264 * 179.73911 * 7 6 5
9 9 C 1.42903 * 116.99552 * 359.73619 * 8 7 6
10 10 C 1.50709 * 109.46631 * 179.97438 * 9 8 7
11 11 O 1.21279 * 120.00080 * 0.02562 * 10 9 8
12 12 N 1.34777 * 119.99692 * 180.02562 * 10 9 8
13 13 C 1.46497 * 120.00015 * 180.02562 * 12 10 9
14 14 H 1.09003 * 109.46733 * 325.00143 * 13 12 10
15 15 C 1.53000 * 109.47145 * 84.99707 * 13 12 10
16 16 C 1.50694 * 109.47115 * 204.99781 * 13 12 10
17 17 H 1.08000 * 120.00563 * 359.97438 * 16 13 12
18 18 C 1.37885 * 119.99902 * 180.02562 * 16 13 12
19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 13
20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 13
21 21 H 1.48506 * 109.46985 * 179.97438 * 20 18 16
22 22 H 1.48494 * 109.47276 * 299.99832 * 20 18 16
23 23 H 1.48498 * 109.47150 * 60.00043 * 20 18 16
24 24 C 1.39156 * 119.85675 * 359.47578 * 7 6 5
25 25 O 1.35989 * 120.07412 * 180.24697 * 24 7 6
26 26 C 1.42905 * 117.00236 * 179.97438 * 25 24 7
27 27 C 1.38236 * 119.92748 * 89.99600 * 4 3 2
28 28 H 1.08011 * 119.99907 * 180.02562 * 1 2 3
29 29 H 1.08001 * 120.00553 * 0.02562 * 1 2 3
30 30 H 1.07994 * 119.99917 * 179.97438 * 2 1 3
31 31 H 1.08999 * 109.47552 * 4.99425 * 3 2 1
32 32 H 1.09004 * 109.46834 * 244.99805 * 3 2 1
33 33 H 1.08000 * 119.92539 * 0.02562 * 5 4 3
34 34 H 1.07996 * 120.00269 * 180.25665 * 6 5 4
35 35 H 1.09003 * 109.47496 * 59.99986 * 9 8 7
36 36 H 1.08992 * 109.47046 * 299.99342 * 9 8 7
37 37 H 0.97005 * 120.00104 * 359.97438 * 12 10 9
38 38 H 1.08997 * 109.47359 * 180.02562 * 15 13 12
39 39 H 1.09007 * 109.47356 * 300.00099 * 15 13 12
40 40 H 1.09000 * 109.47156 * 59.99824 * 15 13 12
41 41 H 0.97001 * 119.99646 * 179.97438 * 19 18 16
42 42 H 1.08994 * 109.46858 * 60.00208 * 26 25 24
43 43 H 1.08997 * 109.47245 * 180.02562 * 26 25 24
44 44 H 1.09002 * 109.46556 * 300.00498 * 26 25 24
45 45 H 1.07994 * 120.00371 * 0.02562 * 27 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0634 1.3051 0.0000
4 6 3.0204 1.3328 1.1639
5 6 2.6081 1.8358 2.3839
6 6 3.4805 1.8585 3.4561
7 6 4.7745 1.3860 3.3064
8 8 5.6357 1.4125 4.3586
9 6 5.1410 1.9465 5.5884
10 6 6.2273 1.8942 6.6317
11 8 7.3177 1.4444 6.3498
12 7 5.9869 2.3473 7.8781
13 6 7.0430 2.2970 8.8921
14 1 7.6486 1.4032 8.7419
15 6 7.9277 3.5391 8.7692
16 6 6.4206 2.2573 10.2640
17 1 5.3459 2.2689 10.3700
18 6 7.2233 2.2073 11.3840
19 7 8.5320 2.1937 11.2550
20 14 6.4518 2.1589 13.0845
21 1 7.5223 2.1078 14.1125
22 1 5.6267 3.3766 13.2886
23 1 5.5931 0.9533 13.2044
24 6 5.1893 0.8793 2.0785
25 8 6.4567 0.4099 1.9281
26 6 6.8126 -0.0958 0.6397
27 6 4.3082 0.8547 1.0093
28 1 -0.5400 -0.9354 0.0004
29 1 -0.5401 0.9353 -0.0004
30 1 1.8500 -0.9353 0.0004
31 1 1.3585 2.1317 0.0895
32 1 2.6213 1.4026 -0.9314
33 1 1.6009 2.2076 2.5009
34 1 3.1548 2.2481 4.4092
35 1 4.2874 1.3572 5.9233
36 1 4.8317 2.9806 5.4371
37 1 5.1149 2.7074 8.1035
38 1 8.7138 3.5015 9.5233
39 1 8.3780 3.5678 7.7768
40 1 7.3221 4.4329 8.9193
41 1 9.0967 2.1589 12.0429
42 1 6.7027 0.6937 -0.1035
43 1 7.8475 -0.4377 0.6568
44 1 6.1590 -0.9297 0.3836
45 1 4.6278 0.4623 0.0553
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000064333315.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:56:08
Heat of formation + Delta-G solvation = -68.826593 kcal
Electronic energy + Delta-G solvation = -25815.203834 eV
Core-core repulsion = 21992.154996 eV
Total energy + Delta-G solvation = -3823.048838 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.162 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-40.72057 -39.17146 -38.06427 -37.53222 -34.92272 -34.67676 -32.42992 -30.98132
-30.52215 -29.53519 -27.85904 -27.31833 -25.86951 -25.24952 -22.66004 -21.82080
-21.03913 -20.12001 -19.48570 -18.55613 -17.42761 -17.26281 -16.42495 -16.28511
-15.58703 -15.53667 -15.41762 -15.23765 -14.78589 -14.62731 -14.25601 -14.13157
-13.75716 -13.66400 -13.16048 -12.77615 -12.54024 -12.35104 -12.29113 -12.04842
-11.72220 -11.63303 -11.33861 -11.30043 -11.19652 -11.09346 -10.95821 -10.82065
-10.68877 -10.33317 -10.23707 -9.69891 -9.07482 -9.03352 -8.85313 -8.55936
-7.96123 -7.81801 -6.12678 -4.22461 1.11639 1.27425 1.97045 2.94497
3.19353 3.25290 3.28890 3.30966 3.32506 3.54283 4.18013 4.37856
4.52735 4.57322 4.73496 4.81694 4.83366 4.93433 5.01756 5.03223
5.10342 5.19087 5.24487 5.26751 5.32639 5.36626 5.43262 5.44090
5.55902 5.61681 5.94820 6.09354 6.26252 6.33664 6.44245 6.55116
6.81870 6.96133 7.00657 7.14054 7.41951 7.49271 7.58528 7.68475
7.90414 8.13891 8.60432 8.76247 9.06887 9.44685 10.93266
Molecular weight = 319.16amu
Principal moments of inertia in cm(-1)
A = 0.020583 B = 0.002319 C = 0.002147
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1360.041855 B =12070.092365 C =13037.180791
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C -0.145 4.145
3 C -0.050 4.050
4 C -0.085 4.085
5 C -0.110 4.110
6 C -0.174 4.174
7 C 0.105 3.895
8 O -0.275 6.275
9 C 0.038 3.962
10 C 0.503 3.497
11 O -0.529 6.529
12 N -0.706 5.706
13 C 0.266 3.734
14 H 0.050 0.950
15 C -0.148 4.148
16 C -0.535 4.535
17 H 0.061 0.939
18 C 0.066 3.934
19 N -0.883 5.883
20 Si 0.903 3.097
21 H -0.286 1.286
22 H -0.276 1.276
23 H -0.276 1.276
24 C 0.103 3.897
25 O -0.300 6.300
26 C 0.027 3.973
27 C -0.170 4.170
28 H 0.097 0.903
29 H 0.096 0.904
30 H 0.108 0.892
31 H 0.077 0.923
32 H 0.080 0.920
33 H 0.125 0.875
34 H 0.137 0.863
35 H 0.087 0.913
36 H 0.086 0.914
37 H 0.389 0.611
38 H 0.091 0.909
39 H 0.015 0.985
40 H 0.027 0.973
41 H 0.265 0.735
42 H 0.053 0.947
43 H 0.100 0.900
44 H 0.052 0.948
45 H 0.133 0.867
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.264 -1.231 -22.997 27.090
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.232 4.232
2 C -0.163 4.163
3 C -0.087 4.087
4 C -0.085 4.085
5 C -0.128 4.128
6 C -0.193 4.193
7 C 0.058 3.942
8 O -0.187 6.187
9 C -0.041 4.041
10 C 0.286 3.714
11 O -0.405 6.405
12 N -0.356 5.356
13 C 0.165 3.835
14 H 0.068 0.932
15 C -0.207 4.207
16 C -0.574 4.574
17 H 0.079 0.921
18 C -0.138 4.138
19 N -0.520 5.520
20 Si 0.731 3.269
21 H -0.211 1.211
22 H -0.202 1.202
23 H -0.202 1.202
24 C 0.057 3.943
25 O -0.213 6.213
26 C -0.068 4.068
27 C -0.189 4.189
28 H 0.115 0.885
29 H 0.115 0.885
30 H 0.126 0.874
31 H 0.095 0.905
32 H 0.098 0.902
33 H 0.143 0.857
34 H 0.155 0.845
35 H 0.104 0.896
36 H 0.104 0.896
37 H 0.222 0.778
38 H 0.110 0.890
39 H 0.035 0.965
40 H 0.046 0.954
41 H 0.075 0.925
42 H 0.071 0.929
43 H 0.118 0.882
44 H 0.071 0.929
45 H 0.151 0.849
Dipole moment (debyes) X Y Z Total
from point charges -12.890 -1.646 -22.907 26.336
hybrid contribution -1.131 0.180 0.929 1.475
sum -14.021 -1.466 -21.978 26.111
Atomic orbital electron populations
1.23851 0.95836 1.01901 1.01630 1.22883 0.95880 0.98151 0.99394
1.19693 0.96870 0.95919 0.96186 1.19366 0.93655 1.00236 0.95237
1.20685 0.99391 1.00868 0.91854 1.21106 0.92321 1.05040 1.00816
1.18395 0.89687 0.99410 0.86683 1.86313 1.36959 1.78221 1.17215
1.22668 0.97595 0.99882 0.83972 1.19844 0.88461 0.79719 0.83403
1.90716 1.24643 1.45291 1.79874 1.46419 1.17384 1.61803 1.09990
1.18779 0.84797 0.95811 0.84091 0.93232 1.22092 1.01287 0.97795
0.99497 1.21159 0.93226 1.52916 0.90049 0.92054 1.24900 0.94827
0.94630 0.99396 1.69896 1.03063 1.48940 1.30075 0.86481 0.78771
0.78620 0.83047 1.21121 1.20154 1.20173 1.18241 0.85388 0.98815
0.91852 1.86290 1.25974 1.75821 1.33187 1.23060 1.01930 0.98140
0.83695 1.20873 0.93988 1.06015 0.97993 0.88477 0.88549 0.87363
0.90453 0.90176 0.85718 0.84525 0.89555 0.89603 0.77837 0.89037
0.96545 0.95394 0.92462 0.92879 0.88153 0.92906 0.84908
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.20 -1.25 14.32 29.01 0.42 -0.83 16
2 C -0.15 -1.03 9.50 -36.03 -0.34 -1.37 16
3 C -0.05 -0.35 5.78 -29.04 -0.17 -0.52 16
4 C -0.08 -0.81 5.12 -104.61 -0.54 -1.34 16
5 C -0.11 -1.09 9.69 -39.57 -0.38 -1.47 16
6 C -0.17 -2.02 9.04 -39.46 -0.36 -2.38 16
7 C 0.10 1.55 6.70 -39.12 -0.26 1.29 16
8 O -0.28 -4.93 9.46 -47.36 -0.45 -5.37 16
9 C 0.04 0.58 5.22 36.01 0.19 0.77 16
10 C 0.50 10.45 7.87 -10.98 -0.09 10.37 16
11 O -0.53 -13.66 16.16 -14.35 -0.23 -13.89 16
12 N -0.71 -14.67 5.07 -54.93 -0.28 -14.95 16
13 C 0.27 6.84 2.56 -69.09 -0.18 6.66 16
14 H 0.05 1.48 7.58 -51.93 -0.39 1.08 16
15 C -0.15 -3.72 9.26 37.16 0.34 -3.38 16
16 C -0.54 -14.13 8.73 -34.44 -0.30 -14.43 16
17 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16
18 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16
19 N -0.88 -24.94 11.32 55.43 0.63 -24.32 16
20 Si 0.90 20.58 29.54 -169.99 -5.02 15.55 16
21 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16
22 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16
23 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16
24 C 0.10 1.42 6.70 -39.12 -0.26 1.16 16
25 O -0.30 -4.40 10.28 -34.21 -0.35 -4.75 16
26 C 0.03 0.25 9.81 101.05 0.99 1.24 16
27 C -0.17 -1.79 8.69 -39.46 -0.34 -2.13 16
28 H 0.10 0.55 8.06 -52.48 -0.42 0.13 16
29 H 0.10 0.53 7.84 -52.49 -0.41 0.12 16
30 H 0.11 0.77 8.06 -52.49 -0.42 0.34 16
31 H 0.08 0.47 7.74 -51.93 -0.40 0.07 16
32 H 0.08 0.48 8.08 -51.93 -0.42 0.06 16
33 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16
34 H 0.14 1.31 6.30 -52.49 -0.33 0.98 16
35 H 0.09 1.08 7.65 -51.93 -0.40 0.68 16
36 H 0.09 1.06 7.67 -51.93 -0.40 0.66 16
37 H 0.39 6.69 8.54 -40.82 -0.35 6.35 16
38 H 0.09 2.49 6.07 -51.93 -0.32 2.18 16
39 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16
40 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16
41 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16
42 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16
43 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16
44 H 0.05 0.39 7.67 -51.93 -0.40 -0.01 16
45 H 0.13 1.07 6.30 -52.49 -0.33 0.74 16
LS Contribution 381.18 15.07 5.74 5.74
Total: -1.00 -34.06 381.18 -7.95 -42.01
By element:
Atomic # 1 Polarization: 11.29 SS G_CDS: -6.62 Total: 4.67 kcal
Atomic # 6 Polarization: -3.32 SS G_CDS: -1.37 Total: -4.69 kcal
Atomic # 7 Polarization: -39.62 SS G_CDS: 0.35 Total: -39.27 kcal
Atomic # 8 Polarization: -22.98 SS G_CDS: -1.03 Total: -24.02 kcal
Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.55 kcal
Total LS contribution 5.74 Total: 5.74 kcal
Total: -34.06 -7.95 -42.01 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000064333315.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -26.817 kcal
(2) G-P(sol) polarization free energy of solvation -34.058 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.875 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.952 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.009 kcal
(6) G-S(sol) free energy of system = (1) + (5) -68.827 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.64 seconds