Wall clock time and date at job start Tue Mar 31 2020 12:56:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.31001 * 1
3 3 C 1.50697 * 119.99741 * 2 1
4 4 C 1.50702 * 109.47339 * 125.00022 * 3 2 1
5 5 C 1.38259 * 119.92384 * 270.02029 * 4 3 2
6 6 C 1.38241 * 120.14523 * 179.74402 * 5 4 3
7 7 C 1.38564 * 119.99646 * 0.50417 * 6 5 4
8 8 O 1.35998 * 120.07264 * 179.73911 * 7 6 5
9 9 C 1.42903 * 116.99552 * 359.73619 * 8 7 6
10 10 C 1.50709 * 109.46631 * 179.97438 * 9 8 7
11 11 O 1.21279 * 120.00080 * 0.02562 * 10 9 8
12 12 N 1.34777 * 119.99692 * 180.02562 * 10 9 8
13 13 C 1.46497 * 120.00015 * 180.02562 * 12 10 9
14 14 H 1.09003 * 109.46733 * 325.00143 * 13 12 10
15 15 C 1.53000 * 109.47145 * 84.99707 * 13 12 10
16 16 C 1.50694 * 109.47115 * 204.99781 * 13 12 10
17 17 H 1.08000 * 120.00563 * 359.97438 * 16 13 12
18 18 C 1.37885 * 119.99902 * 180.02562 * 16 13 12
19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 13
20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 13
21 21 H 1.48506 * 109.46985 * 179.97438 * 20 18 16
22 22 H 1.48494 * 109.47276 * 299.99832 * 20 18 16
23 23 H 1.48498 * 109.47150 * 60.00043 * 20 18 16
24 24 C 1.39156 * 119.85675 * 359.47578 * 7 6 5
25 25 O 1.35989 * 120.07412 * 180.24697 * 24 7 6
26 26 C 1.42905 * 117.00236 * 179.97438 * 25 24 7
27 27 C 1.38236 * 119.92748 * 89.99600 * 4 3 2
28 28 H 1.08011 * 119.99907 * 180.02562 * 1 2 3
29 29 H 1.08001 * 120.00553 * 0.02562 * 1 2 3
30 30 H 1.07994 * 119.99917 * 179.97438 * 2 1 3
31 31 H 1.08999 * 109.47552 * 4.99425 * 3 2 1
32 32 H 1.09004 * 109.46834 * 244.99805 * 3 2 1
33 33 H 1.08000 * 119.92539 * 0.02562 * 5 4 3
34 34 H 1.07996 * 120.00269 * 180.25665 * 6 5 4
35 35 H 1.09003 * 109.47496 * 59.99986 * 9 8 7
36 36 H 1.08992 * 109.47046 * 299.99342 * 9 8 7
37 37 H 0.97005 * 120.00104 * 359.97438 * 12 10 9
38 38 H 1.08997 * 109.47359 * 180.02562 * 15 13 12
39 39 H 1.09007 * 109.47356 * 300.00099 * 15 13 12
40 40 H 1.09000 * 109.47156 * 59.99824 * 15 13 12
41 41 H 0.97001 * 119.99646 * 179.97438 * 19 18 16
42 42 H 1.08994 * 109.46858 * 60.00208 * 26 25 24
43 43 H 1.08997 * 109.47245 * 180.02562 * 26 25 24
44 44 H 1.09002 * 109.46556 * 300.00498 * 26 25 24
45 45 H 1.07994 * 120.00371 * 0.02562 * 27 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0634 1.3051 0.0000
4 6 3.0204 1.3328 1.1639
5 6 2.6081 1.8358 2.3839
6 6 3.4805 1.8585 3.4561
7 6 4.7745 1.3860 3.3064
8 8 5.6357 1.4125 4.3586
9 6 5.1410 1.9465 5.5884
10 6 6.2273 1.8942 6.6317
11 8 7.3177 1.4444 6.3498
12 7 5.9869 2.3473 7.8781
13 6 7.0430 2.2970 8.8921
14 1 7.6486 1.4032 8.7419
15 6 7.9277 3.5391 8.7692
16 6 6.4206 2.2573 10.2640
17 1 5.3459 2.2689 10.3700
18 6 7.2233 2.2073 11.3840
19 7 8.5320 2.1937 11.2550
20 14 6.4518 2.1589 13.0845
21 1 7.5223 2.1078 14.1125
22 1 5.6267 3.3766 13.2886
23 1 5.5931 0.9533 13.2044
24 6 5.1893 0.8793 2.0785
25 8 6.4567 0.4099 1.9281
26 6 6.8126 -0.0958 0.6397
27 6 4.3082 0.8547 1.0093
28 1 -0.5400 -0.9354 0.0004
29 1 -0.5401 0.9353 -0.0004
30 1 1.8500 -0.9353 0.0004
31 1 1.3585 2.1317 0.0895
32 1 2.6213 1.4026 -0.9314
33 1 1.6009 2.2076 2.5009
34 1 3.1548 2.2481 4.4092
35 1 4.2874 1.3572 5.9233
36 1 4.8317 2.9806 5.4371
37 1 5.1149 2.7074 8.1035
38 1 8.7138 3.5015 9.5233
39 1 8.3780 3.5678 7.7768
40 1 7.3221 4.4329 8.9193
41 1 9.0967 2.1589 12.0429
42 1 6.7027 0.6937 -0.1035
43 1 7.8475 -0.4377 0.6568
44 1 6.1590 -0.9297 0.3836
45 1 4.6278 0.4623 0.0553
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000064333315.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:56:07
Heat of formation + Delta-G solvation = -90.190577 kcal
Electronic energy + Delta-G solvation = -25816.130246 eV
Core-core repulsion = 21992.154996 eV
Total energy + Delta-G solvation = -3823.975250 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.162 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-41.67877 -40.65151 -39.25164 -38.43714 -36.71864 -35.45975 -34.38333 -31.92916
-31.50466 -31.02865 -28.95779 -28.32318 -27.34234 -26.61268 -23.79027 -22.88678
-22.41793 -21.28285 -20.62715 -19.57672 -19.05416 -18.15571 -17.73434 -17.43257
-17.13829 -17.02599 -16.54471 -16.08375 -16.01020 -15.60373 -15.35344 -15.26369
-14.96086 -14.67221 -14.44633 -14.23728 -13.83987 -13.68052 -13.38330 -13.05242
-13.01392 -12.87474 -12.74656 -12.71369 -12.28262 -12.25033 -12.18255 -12.12112
-12.09060 -12.02241 -11.58080 -11.13763 -10.79546 -10.58642 -10.19189 -9.83783
-9.67521 -8.75022 -8.17481 -6.35724 0.28977 0.42571 1.45711 1.47553
1.48562 1.56085 1.66650 1.72849 2.40294 2.41131 2.71242 2.86642
3.12957 3.72071 3.83098 3.90541 4.02476 4.10414 4.14303 4.18872
4.24157 4.32348 4.37959 4.42431 4.45979 4.66491 4.69836 4.73287
4.82365 4.90282 4.99295 5.06959 5.13179 5.17637 5.28902 5.39886
5.57014 5.59312 5.64850 5.71576 5.83730 5.86843 5.95113 6.07116
6.09991 6.62462 6.70982 6.88827 7.30569 7.48488 8.88911
Molecular weight = 319.16amu
Principal moments of inertia in cm(-1)
A = 0.020583 B = 0.002319 C = 0.002147
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1360.041855 B =12070.092365 C =13037.180791
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.191 4.191
2 C -0.159 4.159
3 C -0.046 4.046
4 C -0.078 4.078
5 C -0.111 4.111
6 C -0.170 4.170
7 C 0.064 3.936
8 O -0.318 6.318
9 C 0.051 3.949
10 C 0.497 3.503
11 O -0.590 6.590
12 N -0.696 5.696
13 C 0.271 3.729
14 H -0.005 1.005
15 C -0.135 4.135
16 C -0.546 4.546
17 H 0.079 0.921
18 C 0.011 3.989
19 N -0.919 5.919
20 Si 0.977 3.023
21 H -0.288 1.288
22 H -0.261 1.261
23 H -0.270 1.270
24 C 0.077 3.923
25 O -0.342 6.342
26 C 0.019 3.981
27 C -0.167 4.167
28 H 0.101 0.899
29 H 0.107 0.893
30 H 0.103 0.897
31 H 0.092 0.908
32 H 0.092 0.908
33 H 0.153 0.847
34 H 0.158 0.842
35 H 0.120 0.880
36 H 0.123 0.877
37 H 0.411 0.589
38 H 0.067 0.933
39 H 0.009 0.991
40 H 0.045 0.955
41 H 0.266 0.734
42 H 0.070 0.930
43 H 0.106 0.894
44 H 0.068 0.932
45 H 0.155 0.845
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.116 -0.384 -23.887 29.982
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.228 4.228
2 C -0.177 4.177
3 C -0.083 4.083
4 C -0.078 4.078
5 C -0.129 4.129
6 C -0.188 4.188
7 C 0.019 3.981
8 O -0.231 6.231
9 C -0.027 4.027
10 C 0.283 3.717
11 O -0.470 6.470
12 N -0.347 5.347
13 C 0.168 3.832
14 H 0.013 0.987
15 C -0.194 4.194
16 C -0.585 4.585
17 H 0.097 0.903
18 C -0.189 4.189
19 N -0.557 5.557
20 Si 0.801 3.199
21 H -0.214 1.214
22 H -0.186 1.186
23 H -0.195 1.195
24 C 0.031 3.969
25 O -0.256 6.256
26 C -0.075 4.075
27 C -0.186 4.186
28 H 0.119 0.881
29 H 0.126 0.874
30 H 0.122 0.878
31 H 0.110 0.890
32 H 0.110 0.890
33 H 0.171 0.829
34 H 0.175 0.825
35 H 0.138 0.862
36 H 0.140 0.860
37 H 0.247 0.753
38 H 0.086 0.914
39 H 0.028 0.972
40 H 0.064 0.936
41 H 0.075 0.925
42 H 0.088 0.912
43 H 0.125 0.875
44 H 0.087 0.913
45 H 0.172 0.828
Dipole moment (debyes) X Y Z Total
from point charges -16.809 -0.781 -23.824 29.167
hybrid contribution 0.025 -0.128 1.052 1.060
sum -16.783 -0.909 -22.771 28.303
Atomic orbital electron populations
1.24026 0.95703 1.02717 1.00307 1.22888 0.96200 0.98014 1.00604
1.19738 0.96653 0.96405 0.95499 1.19764 0.93540 0.98364 0.96132
1.21068 1.00298 1.00168 0.91372 1.21380 0.91110 1.04044 1.02293
1.18806 0.90812 1.02222 0.86280 1.86229 1.39098 1.79427 1.18383
1.22584 0.95335 1.02657 0.82133 1.20829 0.89008 0.77833 0.84017
1.90685 1.27659 1.47737 1.80933 1.46096 1.17312 1.61844 1.09494
1.18384 0.85648 0.93594 0.85614 0.98666 1.21914 1.00810 0.98423
0.98219 1.21503 0.94107 1.52626 0.90216 0.90331 1.25869 0.95199
0.94090 1.03708 1.70063 1.04658 1.49831 1.31145 0.85330 0.77790
0.79177 0.77619 1.21376 1.18583 1.19546 1.18659 0.85733 0.99734
0.92725 1.86222 1.26966 1.76487 1.35941 1.23317 1.02693 0.99174
0.82326 1.21142 0.93959 1.05495 0.97956 0.88053 0.87445 0.87849
0.88983 0.89009 0.82927 0.82490 0.86231 0.85955 0.75329 0.91385
0.97221 0.93575 0.92531 0.91158 0.87519 0.91320 0.82757
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.19 -1.87 14.32 67.78 0.97 -0.90 16
2 C -0.16 -1.81 9.50 25.64 0.24 -1.57 16
3 C -0.05 -0.49 5.78 29.10 0.17 -0.32 16
4 C -0.08 -1.27 5.12 -19.86 -0.10 -1.38 16
5 C -0.11 -1.86 9.69 22.28 0.22 -1.64 16
6 C -0.17 -3.56 9.04 22.35 0.20 -3.36 16
7 C 0.06 1.88 6.70 22.57 0.15 2.03 16
8 O -0.32 -11.61 9.46 -67.11 -0.63 -12.24 16
9 C 0.05 1.51 5.22 71.24 0.37 1.88 16
10 C 0.50 21.06 7.87 87.66 0.69 21.75 16
11 O -0.59 -32.21 16.16 16.01 0.26 -31.95 16
12 N -0.70 -28.97 5.07 -446.10 -2.26 -31.23 16
13 C 0.27 14.31 2.56 44.24 0.11 14.43 16
14 H 0.00 -0.29 7.58 -2.39 -0.02 -0.31 16
15 C -0.13 -6.99 9.26 71.98 0.67 -6.32 16
16 C -0.55 -28.82 8.73 25.60 0.22 -28.60 16
17 H 0.08 3.78 7.74 -2.91 -0.02 3.76 16
18 C 0.01 0.61 5.30 84.66 0.45 1.06 16
19 N -0.92 -53.30 11.32 21.45 0.24 -53.06 16
20 Si 0.98 41.82 29.54 68.60 2.03 43.84 16
21 H -0.29 -12.35 7.11 99.48 0.71 -11.64 16
22 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16
23 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16
24 C 0.08 2.14 6.70 22.57 0.15 2.29 16
25 O -0.34 -10.47 10.28 -79.56 -0.82 -11.29 16
26 C 0.02 0.35 9.81 113.37 1.11 1.46 16
27 C -0.17 -3.27 8.69 22.35 0.19 -3.08 16
28 H 0.10 0.89 8.06 -2.91 -0.02 0.87 16
29 H 0.11 0.80 7.84 -2.91 -0.02 0.78 16
30 H 0.10 1.26 8.06 -2.91 -0.02 1.23 16
31 H 0.09 0.74 7.74 -2.39 -0.02 0.73 16
32 H 0.09 0.78 8.08 -2.38 -0.02 0.76 16
33 H 0.15 1.68 8.06 -2.91 -0.02 1.65 16
34 H 0.16 2.46 6.30 -2.91 -0.02 2.45 16
35 H 0.12 2.71 7.65 -2.39 -0.02 2.69 16
36 H 0.12 2.70 7.67 -2.39 -0.02 2.68 16
37 H 0.41 13.43 8.54 -92.70 -0.79 12.64 16
38 H 0.07 3.85 6.07 -2.39 -0.01 3.83 16
39 H 0.01 0.46 8.14 -2.38 -0.02 0.44 16
40 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16
41 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16
42 H 0.07 0.98 7.66 -2.39 -0.02 0.96 16
43 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16
44 H 0.07 0.98 7.67 -2.39 -0.02 0.96 16
45 H 0.15 2.18 6.30 -2.91 -0.02 2.16 16
Total: -1.00 -79.10 381.18 4.84 -74.26
By element:
Atomic # 1 Polarization: 23.72 SS G_CDS: 0.20 Total: 23.93 kcal
Atomic # 6 Polarization: -8.08 SS G_CDS: 5.82 Total: -2.26 kcal
Atomic # 7 Polarization: -82.27 SS G_CDS: -2.02 Total: -84.29 kcal
Atomic # 8 Polarization: -54.29 SS G_CDS: -1.19 Total: -55.48 kcal
Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.84 kcal
Total: -79.10 4.84 -74.26 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000064333315.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -15.935 kcal
(2) G-P(sol) polarization free energy of solvation -79.096 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.031 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.841 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.255 kcal
(6) G-S(sol) free energy of system = (1) + (5) -90.191 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds