Wall clock time and date at job start Tue Mar 31 2020 12:47:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.09002 * 109.46241 * 2 1
4 4 N 1.46502 * 109.46960 * 119.99836 * 2 1 3
5 5 C 1.34773 * 119.99980 * 274.72805 * 4 2 1
6 6 O 1.21281 * 120.00292 * 0.27686 * 5 4 2
7 7 C 1.50703 * 120.00006 * 180.27980 * 5 4 2
8 8 C 1.50691 * 109.47220 * 179.97438 * 7 5 4
9 9 C 1.38324 * 119.96799 * 269.72198 * 8 7 5
10 10 C 1.38278 * 120.14105 * 179.76555 * 9 8 7
11 11 C 1.38119 * 120.06608 * 0.51269 * 10 9 8
12 12 C 1.38847 * 119.93471 * 359.74043 * 11 10 9
13 13 O 1.35749 * 120.07323 * 179.97438 * 12 11 10
14 14 C 1.34828 * 116.99975 * 354.39111 * 13 12 11
15 15 H 1.08002 * 119.99994 * 5.07029 * 14 13 12
16 16 C 1.38657 * 120.00346 * 185.06703 * 14 13 12
17 17 N 1.31551 * 119.99621 * 0.02562 * 16 14 13
18 18 Si 1.86804 * 120.00036 * 180.02562 * 16 14 13
19 19 H 1.48498 * 109.47042 * 90.00071 * 18 16 14
20 20 H 1.48496 * 109.47048 * 210.00181 * 18 16 14
21 21 H 1.48501 * 109.46880 * 330.00029 * 18 16 14
22 22 C 1.38085 * 119.96757 * 89.99640 * 8 7 5
23 23 C 1.52997 * 109.47506 * 240.00189 * 2 1 3
24 24 H 1.09003 * 110.80315 * 308.15448 * 23 2 1
25 25 C 1.54800 * 110.90921 * 184.52191 * 23 2 1
26 26 C 1.54100 * 104.19138 * 220.92180 * 25 23 2
27 27 O 1.43745 * 107.29118 * 357.97031 * 26 25 23
28 28 C 1.44381 * 106.97589 * 26.51104 * 27 26 25
29 29 H 1.09005 * 109.46923 * 174.99670 * 1 2 3
30 30 H 1.08993 * 109.47595 * 294.99778 * 1 2 3
31 31 H 1.09003 * 109.47602 * 55.00535 * 1 2 3
32 32 H 0.97001 * 119.99455 * 95.00695 * 4 2 1
33 33 H 1.09004 * 109.46822 * 299.99787 * 7 5 4
34 34 H 1.08996 * 109.47294 * 59.99653 * 7 5 4
35 35 H 1.08006 * 119.92366 * 359.97438 * 9 8 7
36 36 H 1.08005 * 119.96269 * 180.25250 * 10 9 8
37 37 H 1.08009 * 120.03002 * 179.76566 * 11 10 9
38 38 H 0.97001 * 119.99857 * 180.02562 * 17 16 14
39 39 H 1.08000 * 120.03323 * 0.02562 * 22 8 7
40 40 H 1.09000 * 110.49262 * 339.59836 * 25 23 2
41 41 H 1.08999 * 110.48892 * 102.10881 * 25 23 2
42 42 H 1.09003 * 109.88478 * 117.39124 * 26 25 23
43 43 H 1.08998 * 109.88031 * 238.54853 * 26 25 23
44 44 H 1.08996 * 110.61767 * 201.43855 * 28 27 26
45 45 H 1.08998 * 110.61644 * 78.44049 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8932 1.0277 0.0000
4 7 2.0183 -0.6906 1.1962
5 6 2.1522 -0.0169 2.3558
6 8 1.8637 1.1598 2.4103
7 6 2.6605 -0.7258 3.5847
8 6 2.7168 0.2440 4.7368
9 6 3.8687 0.9734 4.9702
10 6 3.9227 1.8678 6.0234
11 6 2.8294 2.0277 6.8522
12 6 1.6735 1.2932 6.6237
13 8 0.5975 1.4478 7.4368
14 6 0.7542 2.2417 8.5152
15 1 1.6766 2.7855 8.6560
16 6 -0.2689 2.3603 9.4435
17 7 -1.3924 1.6976 9.2723
18 14 -0.0520 3.4609 10.9372
19 1 -0.5218 4.8321 10.6141
20 1 -0.8452 2.9199 12.0700
21 1 1.3835 3.5055 11.3148
22 6 1.6205 0.3995 5.5617
23 6 2.0401 -0.7212 -1.2492
24 1 1.5757 -1.7025 -1.3464
25 6 3.5834 -0.8400 -1.2271
26 6 4.0057 -0.5478 -2.6800
27 8 2.8038 -0.3397 -3.4406
28 6 1.7984 0.1341 -2.5190
29 1 -0.3633 -1.0238 -0.0896
30 1 -0.3634 0.4342 0.9313
31 1 -0.3634 0.5894 -0.8419
32 1 2.2491 -1.6317 1.1526
33 1 1.9893 -1.5477 3.8337
34 1 3.6589 -1.1179 3.3912
35 1 4.7266 0.8464 4.3264
36 1 4.8222 2.4388 6.2006
37 1 2.8735 2.7237 7.6769
38 1 -2.1083 1.7808 9.9215
39 1 0.7231 -0.1739 5.3819
40 1 4.0132 -0.1025 -0.5492
41 1 3.8844 -1.8461 -0.9351
42 1 4.6249 0.3486 -2.7129
43 1 4.5573 -1.3969 -3.0835
44 1 0.7992 -0.0431 -2.9168
45 1 1.9445 1.1923 -2.3025
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000089815925.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:47:09
Heat of formation + Delta-G solvation = -118.418529 kcal
Electronic energy + Delta-G solvation = -26096.060165 eV
Core-core repulsion = 22270.860859 eV
Total energy + Delta-G solvation = -3825.199306 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.162 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-41.32395 -40.70602 -40.02115 -38.23970 -36.74296 -34.34898 -33.73131 -32.85501
-31.51818 -30.84237 -29.22985 -28.33007 -27.23851 -24.84902 -23.30035 -23.09215
-22.68496 -21.45948 -21.32325 -19.49638 -18.80761 -18.08293 -17.70028 -17.14551
-16.80736 -16.54217 -16.27701 -16.14770 -15.98309 -15.82525 -15.49395 -14.92884
-14.82295 -14.49793 -14.34698 -14.27418 -14.00588 -13.83643 -13.61077 -13.36336
-12.97035 -12.80075 -12.63106 -12.46977 -12.40296 -12.31476 -12.21300 -12.11617
-12.06414 -11.94991 -11.53459 -11.20386 -10.91105 -10.79234 -10.65661 -10.08532
-9.62651 -8.97320 -8.47326 -6.15828 0.52926 0.76484 1.33505 1.43372
1.51559 1.71748 2.17098 2.20681 2.85179 2.94998 3.18445 3.44953
3.57856 3.65957 3.82140 3.90673 4.10389 4.14658 4.18229 4.24430
4.27540 4.32712 4.42702 4.45693 4.50117 4.59061 4.66384 4.74033
4.74569 4.80899 4.83167 4.87224 5.00470 5.05071 5.08586 5.13127
5.19127 5.29674 5.32000 5.55114 5.65808 5.73442 5.76113 5.89310
6.02861 6.24538 6.63068 6.97268 7.36151 7.79191 8.76329
Molecular weight = 319.16amu
Principal moments of inertia in cm(-1)
A = 0.026986 B = 0.002297 C = 0.002195
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1037.314753 B =12187.379320 C =12754.493616
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C 0.156 3.844
3 H 0.065 0.935
4 N -0.711 5.711
5 C 0.516 3.484
6 O -0.578 6.578
7 C -0.092 4.092
8 C -0.025 4.025
9 C -0.180 4.180
10 C -0.074 4.074
11 C -0.248 4.248
12 C 0.111 3.889
13 O -0.235 6.235
14 C -0.414 4.414
15 H 0.100 0.900
16 C -0.025 4.025
17 N -0.922 5.922
18 Si 1.020 2.980
19 H -0.265 1.265
20 H -0.269 1.269
21 H -0.252 1.252
22 C -0.193 4.193
23 C -0.117 4.117
24 H 0.110 0.890
25 C -0.147 4.147
26 C 0.040 3.960
27 O -0.400 6.400
28 C 0.051 3.949
29 H 0.076 0.924
30 H 0.030 0.970
31 H 0.077 0.923
32 H 0.418 0.582
33 H 0.120 0.880
34 H 0.145 0.855
35 H 0.148 0.852
36 H 0.145 0.855
37 H 0.117 0.883
38 H 0.272 0.728
39 H 0.105 0.895
40 H 0.071 0.929
41 H 0.101 0.899
42 H 0.056 0.944
43 H 0.097 0.903
44 H 0.108 0.892
45 H 0.059 0.941
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.108 -9.114 -21.832 26.577
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.222 4.222
2 C 0.051 3.949
3 H 0.083 0.917
4 N -0.364 5.364
5 C 0.303 3.697
6 O -0.457 6.457
7 C -0.131 4.131
8 C -0.026 4.026
9 C -0.199 4.199
10 C -0.092 4.092
11 C -0.267 4.267
12 C 0.061 3.939
13 O -0.142 6.142
14 C -0.490 4.490
15 H 0.117 0.883
16 C -0.222 4.222
17 N -0.561 5.561
18 Si 0.839 3.161
19 H -0.190 1.190
20 H -0.193 1.193
21 H -0.176 1.176
22 C -0.212 4.212
23 C -0.136 4.136
24 H 0.128 0.872
25 C -0.185 4.185
26 C -0.036 4.036
27 O -0.320 6.320
28 C -0.026 4.026
29 H 0.095 0.905
30 H 0.050 0.950
31 H 0.096 0.904
32 H 0.255 0.745
33 H 0.139 0.861
34 H 0.163 0.837
35 H 0.166 0.834
36 H 0.162 0.838
37 H 0.134 0.866
38 H 0.081 0.919
39 H 0.123 0.877
40 H 0.089 0.911
41 H 0.119 0.881
42 H 0.075 0.925
43 H 0.115 0.885
44 H 0.126 0.874
45 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges 11.468 -8.443 -21.949 26.164
hybrid contribution -0.419 0.478 1.191 1.350
sum 11.049 -7.965 -20.758 24.828
Atomic orbital electron populations
1.22204 0.95078 1.03205 1.01758 1.20798 0.94059 0.96415 0.83626
0.91676 1.45861 1.67377 1.14637 1.08573 1.20882 0.76802 0.86821
0.85171 1.90761 1.51014 1.18570 1.85343 1.20711 1.06380 0.97244
0.88758 1.19216 0.92365 0.96755 0.94226 1.20976 0.98781 0.99916
1.00186 1.21135 0.97153 0.97131 0.93816 1.21291 0.95122 1.05522
1.04804 1.19890 0.87710 0.94528 0.91760 1.83934 1.32840 1.62760
1.34653 1.21820 1.03905 1.24056 0.99224 0.88286 1.26618 0.94086
0.99533 1.01952 1.70189 1.05874 1.42401 1.37617 0.84574 0.79476
0.77003 0.75050 1.18951 1.19339 1.17584 1.20228 1.00226 1.02850
0.97942 1.22959 0.96553 1.00890 0.93219 0.87190 1.22986 0.94432
1.04332 0.96715 1.23315 0.87599 1.01658 0.91068 1.88864 1.22249
1.86996 1.33869 1.23662 0.93383 0.97378 0.88195 0.90534 0.95041
0.90406 0.74495 0.86148 0.83742 0.83434 0.83770 0.86557 0.91854
0.87668 0.91062 0.88083 0.92533 0.88459 0.87402 0.92323
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.84 9.33 71.98 0.67 -2.16 16
2 C 0.16 2.52 2.04 44.99 0.09 2.61 16
3 H 0.07 1.43 7.42 -2.39 -0.02 1.41 16
4 N -0.71 -11.17 4.61 -442.53 -2.04 -13.21 16
5 C 0.52 12.99 7.79 87.66 0.68 13.68 16
6 O -0.58 -21.61 15.69 -3.03 -0.05 -21.65 16
7 C -0.09 -2.01 5.83 29.10 0.17 -1.84 16
8 C -0.02 -0.86 4.37 -19.88 -0.09 -0.95 16
9 C -0.18 -5.86 9.70 22.30 0.22 -5.64 16
10 C -0.07 -2.72 10.04 22.25 0.22 -2.50 16
11 C -0.25 -11.55 9.17 22.39 0.21 -11.34 16
12 C 0.11 5.89 6.65 22.58 0.15 6.04 16
13 O -0.23 -14.86 9.76 -22.71 -0.22 -15.09 16
14 C -0.41 -25.15 9.49 67.92 0.64 -24.51 16
15 H 0.10 5.55 5.20 -2.91 -0.02 5.54 16
16 C -0.02 -1.46 5.49 84.83 0.47 -1.00 16
17 N -0.92 -58.27 13.67 21.61 0.30 -57.98 16
18 Si 1.02 44.23 29.55 68.60 2.03 46.26 16
19 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16
20 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16
21 H -0.25 -10.14 7.11 99.48 0.71 -9.43 16
22 C -0.19 -8.74 9.65 22.39 0.22 -8.52 16
23 C -0.12 -1.24 2.70 -9.50 -0.03 -1.26 16
24 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16
25 C -0.15 -1.39 6.12 31.58 0.19 -1.19 16
26 C 0.04 0.47 7.70 72.35 0.56 1.03 16
27 O -0.40 -6.67 11.52 -148.98 -1.72 -8.39 16
28 C 0.05 0.66 6.69 72.66 0.49 1.14 16
29 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16
30 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16
31 H 0.08 1.12 7.85 -2.39 -0.02 1.10 16
32 H 0.42 3.36 8.56 -92.71 -0.79 2.57 16
33 H 0.12 2.21 8.09 -2.39 -0.02 2.19 16
34 H 0.14 1.87 8.08 -2.39 -0.02 1.85 16
35 H 0.15 3.54 8.06 -2.91 -0.02 3.51 16
36 H 0.14 4.15 8.06 -2.91 -0.02 4.12 16
37 H 0.12 5.48 5.64 -2.91 -0.02 5.47 16
38 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16
39 H 0.11 4.76 8.06 -2.91 -0.02 4.74 16
40 H 0.07 0.84 7.85 -2.39 -0.02 0.82 16
41 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16
42 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16
43 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16
44 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16
45 H 0.06 0.82 7.94 -2.39 -0.02 0.81 16
Total: -1.00 -85.19 374.97 3.36 -81.83
By element:
Atomic # 1 Polarization: 24.45 SS G_CDS: 0.21 Total: 24.66 kcal
Atomic # 6 Polarization: -41.29 SS G_CDS: 4.86 Total: -36.43 kcal
Atomic # 7 Polarization: -69.44 SS G_CDS: -1.74 Total: -71.19 kcal
Atomic # 8 Polarization: -43.15 SS G_CDS: -1.99 Total: -45.13 kcal
Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal
Total: -85.19 3.36 -81.83 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000089815925.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -36.590 kcal
(2) G-P(sol) polarization free energy of solvation -85.193 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.783 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.364 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.829 kcal
(6) G-S(sol) free energy of system = (1) + (5) -118.419 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds