Wall clock time and date at job start Tue Mar 31 2020 12:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.86920 * 2 1 4 4 O 1.43748 * 110.00121 * 121.08561 * 2 1 3 5 5 C 1.44382 * 106.97242 * 146.00700 * 4 2 1 6 6 C 1.55228 * 103.56711 * 320.01121 * 5 4 2 7 7 C 1.54101 * 109.87873 * 238.99048 * 2 1 3 8 8 H 1.08998 * 110.48653 * 119.58555 * 7 2 1 9 9 C 1.50702 * 110.48393 * 357.07284 * 7 2 1 10 10 O 1.21286 * 120.00026 * 274.84325 * 9 7 2 11 11 N 1.34778 * 120.00063 * 94.85279 * 9 7 2 12 12 C 1.39915 * 120.00159 * 184.52385 * 11 9 7 13 13 C 1.38925 * 120.04395 * 144.88095 * 12 11 9 14 14 C 1.38125 * 120.04207 * 180.02562 * 13 12 11 15 15 C 1.38216 * 120.12548 * 0.02716 * 14 13 12 16 16 C 1.38770 * 120.07969 * 0.22794 * 15 14 13 17 17 O 1.35898 * 120.01730 * 179.72449 * 16 15 14 18 18 C 1.42901 * 117.00080 * 0.02562 * 17 16 15 19 19 C 1.53004 * 109.47069 * 179.97438 * 18 17 16 20 20 C 1.50697 * 109.46952 * 179.97438 * 19 18 17 21 21 H 1.08000 * 120.00181 * 0.02562 * 20 19 18 22 22 C 1.37877 * 119.99974 * 180.02562 * 20 19 18 23 23 N 1.31512 * 120.00074 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00359 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47112 * 59.99520 * 24 22 20 26 26 H 1.48495 * 109.47782 * 180.02562 * 24 22 20 27 27 H 1.48512 * 109.46948 * 300.00148 * 24 22 20 28 28 C 1.38629 * 119.96180 * 359.49401 * 16 15 14 29 29 H 1.09000 * 109.47147 * 176.20028 * 1 2 3 30 30 H 1.09005 * 109.46580 * 296.20280 * 1 2 3 31 31 H 1.08996 * 109.47065 * 56.19479 * 1 2 3 32 32 H 1.09007 * 110.62007 * 78.43815 * 5 4 2 33 33 H 1.08995 * 110.61557 * 201.27439 * 5 4 2 34 34 H 1.08999 * 110.88712 * 278.74443 * 6 5 4 35 35 H 1.08993 * 111.02171 * 155.07259 * 6 5 4 36 36 H 0.96998 * 119.99886 * 4.51887 * 11 9 7 37 37 H 1.08001 * 119.98217 * 0.04681 * 13 12 11 38 38 H 1.07997 * 119.94176 * 180.02562 * 14 13 12 39 39 H 1.07997 * 119.96195 * 179.97438 * 15 14 13 40 40 H 1.08998 * 109.47151 * 299.99842 * 18 17 16 41 41 H 1.08997 * 109.47217 * 60.00065 * 18 17 16 42 42 H 1.08998 * 109.47338 * 300.00134 * 19 18 17 43 43 H 1.09005 * 109.46556 * 60.00447 * 19 18 17 44 44 H 0.97005 * 120.00732 * 180.02562 * 23 22 20 45 45 H 1.08001 * 120.06018 * 180.25206 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0217 -0.6974 1.1568 5 6 3.2417 -1.3609 0.7620 6 6 2.9247 -1.8882 -0.6632 7 6 2.0540 -0.7466 -1.2421 8 1 2.6578 -0.0821 -1.8601 9 6 0.9075 -1.3109 -2.0409 10 8 0.4389 -2.3910 -1.7495 11 7 0.4028 -0.6154 -3.0792 12 6 -0.7212 -1.0937 -3.7614 13 6 -1.6604 -0.2026 -4.2653 14 6 -2.7703 -0.6749 -4.9383 15 6 -2.9499 -2.0343 -5.1119 16 6 -2.0177 -2.9292 -4.6061 17 8 -2.1984 -4.2658 -4.7726 18 6 -3.3701 -4.6790 -5.4787 19 6 -3.4005 -6.2062 -5.5664 20 6 -4.6364 -6.6420 -6.3104 21 1 -5.3305 -5.9036 -6.6838 22 6 -4.8811 -7.9835 -6.5146 23 7 -4.0362 -8.8827 -6.0595 24 14 -6.4127 -8.5238 -7.4374 25 1 -6.3935 -7.9501 -8.8070 26 1 -6.4430 -10.0060 -7.5215 27 1 -7.6196 -8.0445 -6.7169 28 6 -0.8995 -2.4588 -3.9351 29 1 -0.3633 -1.0254 -0.0681 30 1 -0.3633 0.4538 0.9221 31 1 -0.3633 0.5717 -0.8539 32 1 4.0709 -0.6539 0.7321 33 1 3.4664 -2.1855 1.4384 34 1 2.3625 -2.8208 -0.6163 35 1 3.8374 -2.0147 -1.2453 36 1 0.8188 0.2169 -3.3535 37 1 -1.5226 0.8601 -4.1309 38 1 -3.4992 0.0193 -5.3296 39 1 -3.8189 -2.4007 -5.6381 40 1 -4.2559 -4.3274 -4.9498 41 1 -3.3560 -4.2579 -6.4839 42 1 -2.5147 -6.5575 -6.0955 43 1 -3.4145 -6.6276 -4.5612 44 1 -4.2080 -9.8265 -6.2034 45 1 -0.1709 -3.1537 -3.5444 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092304289.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:26 Heat of formation + Delta-G solvation = -123.024760 kcal Electronic energy + Delta-G solvation = -26235.678580 eV Core-core repulsion = 22410.279533 eV Total energy + Delta-G solvation = -3825.399047 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.14253 -40.96469 -39.75790 -38.35075 -35.79325 -35.37654 -33.67862 -32.61477 -32.47830 -30.99914 -30.23367 -27.44093 -26.99419 -24.78585 -23.57862 -23.40891 -23.17743 -21.96932 -20.86430 -19.64156 -18.45022 -18.33787 -17.69778 -17.14454 -17.00764 -16.87201 -16.80314 -16.68720 -16.40311 -16.16017 -15.67407 -15.03495 -14.60539 -14.47648 -14.35770 -14.29746 -13.87183 -13.48967 -13.42144 -13.33440 -13.20621 -13.03750 -12.73283 -12.64629 -12.61104 -12.32804 -12.18904 -12.03138 -11.89853 -11.78643 -11.62242 -11.46039 -11.24083 -10.95322 -10.63863 -10.58543 -9.45165 -9.03621 -8.28218 -6.43014 0.21969 0.47589 1.39337 1.44276 1.45543 1.52260 1.85606 2.28434 2.51505 2.79983 2.85174 3.05806 3.32271 3.54336 3.79625 3.90540 4.04093 4.14715 4.17087 4.19882 4.23795 4.24737 4.25473 4.31668 4.43817 4.51139 4.57161 4.59088 4.69012 4.75689 4.81463 4.89169 4.92933 5.11213 5.17100 5.25503 5.26865 5.32338 5.40234 5.42172 5.50885 5.66002 5.89912 5.91341 6.04511 6.37823 6.54518 6.71730 7.09506 7.27348 8.85106 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.020247 B = 0.002363 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.574541 B =11845.311573 C =12786.549511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.092 3.908 3 H 0.118 0.882 4 O -0.400 6.400 5 C 0.048 3.952 6 C -0.149 4.149 7 C -0.134 4.134 8 H 0.154 0.846 9 C 0.521 3.479 10 O -0.559 6.559 11 N -0.653 5.653 12 C 0.178 3.822 13 C -0.171 4.171 14 C -0.054 4.054 15 C -0.235 4.235 16 C 0.120 3.880 17 O -0.347 6.347 18 C 0.085 3.915 19 C 0.027 3.973 20 C -0.546 4.546 21 H 0.074 0.926 22 C -0.001 4.001 23 N -0.934 5.934 24 Si 0.980 3.020 25 H -0.261 1.261 26 H -0.283 1.283 27 H -0.263 1.263 28 C -0.188 4.188 29 H 0.033 0.967 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.059 0.941 35 H 0.112 0.888 36 H 0.434 0.566 37 H 0.172 0.828 38 H 0.166 0.834 39 H 0.131 0.869 40 H 0.060 0.940 41 H 0.065 0.935 42 H -0.003 1.003 43 H -0.007 1.007 44 H 0.267 0.733 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.399 28.241 7.962 32.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.034 3.966 3 H 0.136 0.864 4 O -0.320 6.320 5 C -0.028 4.028 6 C -0.187 4.187 7 C -0.155 4.155 8 H 0.171 0.829 9 C 0.310 3.690 10 O -0.436 6.436 11 N -0.301 5.301 12 C 0.083 3.917 13 C -0.191 4.191 14 C -0.072 4.072 15 C -0.254 4.254 16 C 0.074 3.926 17 O -0.262 6.262 18 C 0.011 3.989 19 C -0.010 4.010 20 C -0.584 4.584 21 H 0.092 0.908 22 C -0.199 4.199 23 N -0.573 5.573 24 Si 0.803 3.197 25 H -0.185 1.185 26 H -0.208 1.208 27 H -0.188 1.188 28 C -0.209 4.209 29 H 0.052 0.948 30 H 0.090 0.910 31 H 0.106 0.894 32 H 0.113 0.887 33 H 0.114 0.886 34 H 0.077 0.923 35 H 0.130 0.870 36 H 0.275 0.725 37 H 0.189 0.811 38 H 0.183 0.817 39 H 0.149 0.851 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.015 0.985 43 H 0.011 0.989 44 H 0.076 0.924 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 14.176 27.147 8.501 31.784 hybrid contribution -0.573 -1.091 -0.649 1.393 sum 13.603 26.056 7.852 30.424 Atomic orbital electron populations 1.22171 0.94873 1.01816 1.03792 1.22785 0.94494 0.96666 0.82650 0.86436 1.88904 1.41057 1.68404 1.33628 1.23764 0.87393 0.97225 0.94392 1.23253 1.00426 0.97585 0.97411 1.22948 0.94753 0.99946 0.97847 0.82853 1.21074 0.84231 0.84248 0.79478 1.90793 1.61092 1.22963 1.68708 1.43409 1.28584 1.27278 1.30823 1.17422 0.89103 0.90806 0.94381 1.21152 0.93765 1.00608 1.03600 1.21156 0.97185 0.93611 0.95282 1.21537 1.01237 0.95173 1.07456 1.19317 0.95095 0.82962 0.95192 1.86096 1.45859 1.21173 1.73045 1.22888 0.84430 0.96801 0.94767 1.18975 0.96848 0.89204 0.95957 1.21365 1.07353 0.92957 1.36732 0.90796 1.26117 1.00693 0.96588 0.96538 1.70133 1.38543 1.01748 1.46842 0.85281 0.78298 0.77011 0.79132 1.18536 1.20792 1.18750 1.20390 0.99103 0.96163 1.05207 0.94819 0.90988 0.89355 0.88714 0.88641 0.92264 0.87001 0.72524 0.81092 0.81652 0.85098 0.92140 0.91656 0.98506 0.98867 0.92410 0.86971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.01 8.44 71.98 0.61 -2.41 16 2 C 0.09 1.26 4.05 30.97 0.13 1.38 16 3 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 4 O -0.40 -7.75 11.19 -148.98 -1.67 -9.42 16 5 C 0.05 0.63 7.72 72.75 0.56 1.19 16 6 C -0.15 -2.24 6.67 31.98 0.21 -2.03 16 7 C -0.13 -1.70 3.43 -10.55 -0.04 -1.73 16 8 H 0.15 0.45 8.14 -2.39 -0.02 0.43 16 9 C 0.52 11.28 4.63 87.66 0.41 11.68 16 10 O -0.56 -19.14 12.26 -3.05 -0.04 -19.18 16 11 N -0.65 -10.95 5.08 -303.55 -1.54 -12.49 16 12 C 0.18 4.39 6.30 38.14 0.24 4.63 16 13 C -0.17 -3.19 9.96 22.41 0.22 -2.97 16 14 C -0.05 -1.16 10.03 22.24 0.22 -0.94 16 15 C -0.23 -7.28 9.04 22.39 0.20 -7.07 16 16 C 0.12 4.69 6.68 22.49 0.15 4.84 16 17 O -0.35 -16.48 10.13 -92.41 -0.94 -17.42 16 18 C 0.09 3.99 4.68 71.98 0.34 4.33 16 19 C 0.03 1.58 5.34 29.85 0.16 1.74 16 20 C -0.55 -31.83 9.11 25.60 0.23 -31.60 16 21 H 0.07 3.97 7.74 -2.91 -0.02 3.94 16 22 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 23 N -0.93 -58.72 13.29 21.45 0.28 -58.43 16 24 Si 0.98 44.39 29.54 68.60 2.03 46.42 16 25 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 26 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 27 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 28 C -0.19 -6.72 8.63 22.49 0.19 -6.53 16 29 H 0.03 0.89 6.53 -2.39 -0.02 0.88 16 30 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 31 H 0.09 1.19 7.62 -2.39 -0.02 1.17 16 32 H 0.09 0.65 8.14 -2.38 -0.02 0.63 16 33 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.06 1.40 6.92 -2.39 -0.02 1.39 16 35 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.43 2.75 8.82 -92.71 -0.82 1.94 16 37 H 0.17 1.55 8.06 -2.91 -0.02 1.53 16 38 H 0.17 2.27 8.06 -2.91 -0.02 2.25 16 39 H 0.13 3.97 6.29 -2.91 -0.02 3.95 16 40 H 0.06 2.65 7.66 -2.39 -0.02 2.63 16 41 H 0.07 2.80 7.66 -2.39 -0.02 2.79 16 42 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 43 H -0.01 -0.45 8.14 -2.38 -0.02 -0.47 16 44 H 0.27 15.67 8.31 -92.70 -0.77 14.90 16 45 H 0.11 4.66 6.23 -2.91 -0.02 4.64 16 Total: -1.00 -84.56 368.03 2.62 -81.94 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: 0.18 Total: 13.65 kcal Atomic # 6 Polarization: -29.38 SS G_CDS: 4.30 Total: -25.08 kcal Atomic # 7 Polarization: -69.67 SS G_CDS: -1.26 Total: -70.92 kcal Atomic # 8 Polarization: -43.37 SS G_CDS: -2.64 Total: -46.01 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -84.56 2.62 -81.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092304289.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.084 kcal (2) G-P(sol) polarization free energy of solvation -84.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds