Wall clock time and date at job start Tue Mar 31 2020 12:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.86785 * 2 1 4 4 O 1.43746 * 109.87651 * 238.84534 * 2 1 3 5 5 C 1.44381 * 106.97447 * 267.08234 * 4 2 1 6 6 C 1.54990 * 103.49296 * 319.94676 * 5 4 2 7 7 C 1.54090 * 109.87980 * 121.01339 * 2 1 3 8 8 H 1.08999 * 110.49077 * 358.58525 * 7 2 1 9 9 C 1.50709 * 110.48462 * 236.07116 * 7 2 1 10 10 O 1.21282 * 120.00062 * 0.02562 * 9 7 2 11 11 N 1.34780 * 119.99653 * 179.97438 * 9 7 2 12 12 C 1.39921 * 119.99959 * 185.27239 * 11 9 7 13 13 C 1.38931 * 120.03989 * 33.32234 * 12 11 9 14 14 C 1.38124 * 120.04019 * 179.74809 * 13 12 11 15 15 C 1.38211 * 120.12422 * 0.25088 * 14 13 12 16 16 C 1.38768 * 120.08357 * 359.97438 * 15 14 13 17 17 O 1.35899 * 120.01942 * 179.97438 * 16 15 14 18 18 C 1.42900 * 116.99862 * 0.02562 * 17 16 15 19 19 C 1.53006 * 109.46964 * 179.97438 * 18 17 16 20 20 C 1.50698 * 109.47232 * 179.97438 * 19 18 17 21 21 H 1.07999 * 119.99877 * 0.02562 * 20 19 18 22 22 C 1.37875 * 120.00379 * 180.02562 * 20 19 18 23 23 N 1.31517 * 119.99711 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00401 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47020 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47220 * 119.99651 * 24 22 20 27 27 H 1.48504 * 109.47313 * 239.99988 * 24 22 20 28 28 C 1.38621 * 119.95931 * 0.02562 * 16 15 14 29 29 H 1.08995 * 109.47221 * 298.98694 * 1 2 3 30 30 H 1.09006 * 109.47607 * 58.99250 * 1 2 3 31 31 H 1.09001 * 109.46968 * 178.98619 * 1 2 3 32 32 H 1.09007 * 110.61323 * 78.44193 * 5 4 2 33 33 H 1.08997 * 110.62145 * 201.43806 * 5 4 2 34 34 H 1.09001 * 110.90431 * 278.82265 * 6 5 4 35 35 H 1.09001 * 110.91448 * 155.21839 * 6 5 4 36 36 H 0.97001 * 120.00238 * 5.27763 * 11 9 7 37 37 H 1.08002 * 119.98307 * 0.02562 * 13 12 11 38 38 H 1.07998 * 119.93972 * 180.23590 * 14 13 12 39 39 H 1.07997 * 119.95962 * 180.02562 * 15 14 13 40 40 H 1.09002 * 109.47314 * 299.99842 * 18 17 16 41 41 H 1.09005 * 109.47203 * 60.00112 * 18 17 16 42 42 H 1.09002 * 109.47373 * 300.00292 * 19 18 17 43 43 H 1.09005 * 109.46673 * 60.00272 * 19 18 17 44 44 H 0.96999 * 119.99875 * 180.02562 * 23 22 20 45 45 H 1.08007 * 120.06330 * 180.02562 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9004 1.0252 0.0000 4 8 2.0187 -0.6994 -1.1569 5 6 2.2281 -2.0723 -0.7621 6 6 2.8324 -1.9516 0.6600 7 6 2.0540 -0.7466 1.2419 8 1 1.2238 -1.0887 1.8599 9 6 2.9744 0.1398 2.0409 10 8 3.2027 1.2708 1.6670 11 7 3.5429 -0.3239 3.1715 12 6 4.3081 0.5317 3.9716 13 6 3.9750 1.8770 4.0680 14 6 4.7273 2.7205 4.8619 15 6 5.8159 2.2302 5.5581 16 6 6.1561 0.8883 5.4619 17 8 7.2271 0.4076 6.1466 18 6 7.9573 1.3399 6.9465 19 6 9.1178 0.6203 7.6368 20 6 9.8882 1.6035 8.4798 21 1 9.5806 2.6380 8.5197 22 6 10.9858 1.1825 9.2003 23 7 11.3607 -0.0772 9.1513 24 14 11.9403 2.4010 10.2459 25 1 11.3198 3.7452 10.1302 26 1 11.9136 1.9634 11.6647 27 1 13.3469 2.4634 9.7735 28 6 5.4035 0.0386 4.6661 29 1 -0.3633 0.4980 0.8989 30 1 -0.3634 0.5294 -0.8808 31 1 -0.3633 -1.0275 -0.0182 32 1 1.2813 -2.6117 -0.7323 33 1 2.9295 -2.5630 -1.4369 34 1 3.9003 -1.7382 0.6120 35 1 2.6433 -2.8542 1.2411 36 1 3.4216 -1.2508 3.4306 37 1 3.1245 2.2626 3.5254 38 1 4.4645 3.7652 4.9387 39 1 6.4020 2.8920 6.1784 40 1 8.3483 2.1351 6.3119 41 1 7.2962 1.7682 7.7000 42 1 8.7265 -0.1747 8.2715 43 1 9.7790 0.1918 6.8836 44 1 12.1326 -0.3735 9.6585 45 1 5.6665 -1.0062 4.5904 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092304290.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:29 Heat of formation + Delta-G solvation = -104.405437 kcal Electronic energy + Delta-G solvation = -25700.309481 eV Core-core repulsion = 21875.717828 eV Total energy + Delta-G solvation = -3824.591653 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.23285 -39.89830 -38.93725 -37.10968 -34.79223 -33.39680 -32.96524 -31.69438 -30.92775 -29.73549 -28.96804 -27.22450 -25.13314 -23.50612 -22.69273 -22.43834 -21.66479 -20.60883 -20.22004 -18.38804 -18.04593 -16.79804 -16.49137 -16.31356 -15.96977 -15.62512 -15.48976 -15.29011 -14.95091 -14.79765 -14.45401 -14.31085 -13.80516 -13.54060 -13.24464 -13.03656 -12.78688 -12.55076 -12.40842 -12.33370 -11.99338 -11.83272 -11.71968 -11.45473 -11.38274 -11.35366 -10.96435 -10.79974 -10.56676 -10.39038 -10.16264 -9.99617 -9.82692 -9.67760 -9.30713 -8.48479 -8.37735 -7.81758 -6.12493 -4.17018 1.25798 1.63494 2.28465 2.63059 3.25392 3.32617 3.36252 3.39466 3.81997 3.88602 3.94942 4.12506 4.26891 4.39958 4.57425 4.62329 4.73348 4.93860 4.97334 5.04809 5.06771 5.21784 5.24160 5.29999 5.32098 5.32560 5.44431 5.46477 5.61342 5.66646 5.71732 5.80293 6.01018 6.01990 6.23805 6.29609 6.46512 6.50851 6.57730 6.69976 6.92932 7.11543 7.47659 7.61317 7.76718 7.79092 8.01763 8.21552 8.88779 9.47492 10.99109 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.033883 B = 0.001955 C = 0.001883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.166233 B =14322.258884 C =14866.055307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.080 3.920 3 H 0.119 0.881 4 O -0.366 6.366 5 C 0.046 3.954 6 C -0.148 4.148 7 C -0.141 4.141 8 H 0.115 0.885 9 C 0.523 3.477 10 O -0.511 6.511 11 N -0.668 5.668 12 C 0.175 3.825 13 C -0.169 4.169 14 C -0.062 4.062 15 C -0.223 4.223 16 C 0.164 3.836 17 O -0.315 6.315 18 C 0.065 3.935 19 C 0.025 3.975 20 C -0.526 4.526 21 H 0.059 0.941 22 C 0.060 3.940 23 N -0.889 5.889 24 Si 0.899 3.101 25 H -0.272 1.272 26 H -0.282 1.282 27 H -0.282 1.282 28 C -0.188 4.188 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.097 0.903 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.411 0.589 37 H 0.130 0.870 38 H 0.125 0.875 39 H 0.132 0.868 40 H 0.052 0.948 41 H 0.052 0.948 42 H 0.028 0.972 43 H 0.028 0.972 44 H 0.263 0.737 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.133 -4.101 -16.507 28.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.022 3.978 3 H 0.136 0.864 4 O -0.285 6.285 5 C -0.030 4.030 6 C -0.186 4.186 7 C -0.163 4.163 8 H 0.133 0.867 9 C 0.310 3.690 10 O -0.385 6.385 11 N -0.313 5.313 12 C 0.082 3.918 13 C -0.189 4.189 14 C -0.080 4.080 15 C -0.242 4.242 16 C 0.116 3.884 17 O -0.227 6.227 18 C -0.009 4.009 19 C -0.012 4.012 20 C -0.564 4.564 21 H 0.077 0.923 22 C -0.143 4.143 23 N -0.528 5.528 24 Si 0.727 3.273 25 H -0.196 1.196 26 H -0.208 1.208 27 H -0.208 1.208 28 C -0.209 4.209 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.115 0.885 34 H 0.104 0.896 35 H 0.110 0.890 36 H 0.247 0.753 37 H 0.147 0.853 38 H 0.143 0.857 39 H 0.150 0.850 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.046 0.954 43 H 0.046 0.954 44 H 0.072 0.928 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -22.755 -3.527 -16.937 28.585 hybrid contribution 0.520 0.139 1.124 1.246 sum -22.236 -3.388 -15.813 27.494 Atomic orbital electron populations 1.22285 0.94981 1.02463 1.02995 1.22803 0.93971 0.98367 0.82654 0.86384 1.88971 1.86072 1.20502 1.32980 1.23555 0.99971 0.84863 0.94632 1.23202 1.01169 0.96979 0.97287 1.22801 0.98694 0.96476 0.98316 0.86698 1.20406 0.80453 0.88031 0.80112 1.90732 1.60159 1.19560 1.68013 1.43434 1.50653 1.14135 1.23032 1.17280 0.91185 0.90533 0.92811 1.20865 1.02911 0.92298 1.02867 1.20782 0.93685 0.99310 0.94253 1.21407 1.01603 0.95186 1.05989 1.18814 0.87387 0.91565 0.90635 1.86162 1.38198 1.40101 1.58281 1.23365 0.93809 0.91991 0.91743 1.19137 0.90327 0.96468 0.95299 1.21008 1.12255 0.95308 1.27834 0.92268 1.24997 0.97168 0.95375 0.96715 1.69986 1.26287 1.14968 1.41518 0.86424 0.79767 0.81169 0.79989 1.19619 1.20838 1.20835 1.19983 0.96307 1.00684 1.03909 0.91359 0.91342 0.92310 0.91802 0.88498 0.89629 0.88979 0.75338 0.85252 0.85677 0.84977 0.92978 0.92984 0.95387 0.95383 0.92756 0.85103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.05 9.30 37.16 0.35 -0.70 16 2 C 0.08 0.67 3.70 -26.16 -0.10 0.58 16 3 H 0.12 1.26 6.44 -51.93 -0.33 0.92 16 4 O -0.37 -3.52 11.19 -35.23 -0.39 -3.92 16 5 C 0.05 0.28 7.66 38.21 0.29 0.57 16 6 C -0.15 -0.81 6.69 -24.73 -0.17 -0.98 16 7 C -0.14 -0.96 3.07 -90.24 -0.28 -1.24 16 8 H 0.12 0.50 7.70 -51.93 -0.40 0.10 16 9 C 0.52 5.37 6.76 -10.98 -0.07 5.29 16 10 O -0.51 -7.19 12.94 5.56 0.07 -7.12 16 11 N -0.67 -6.47 5.33 -9.88 -0.05 -6.52 16 12 C 0.18 2.32 6.28 -83.72 -0.53 1.80 16 13 C -0.17 -2.35 8.65 -39.37 -0.34 -2.69 16 14 C -0.06 -0.85 10.03 -39.63 -0.40 -1.25 16 15 C -0.22 -3.50 9.04 -39.40 -0.36 -3.86 16 16 C 0.16 2.82 6.68 -39.24 -0.26 2.56 16 17 O -0.31 -6.36 10.13 -19.42 -0.20 -6.56 16 18 C 0.06 1.38 4.68 37.16 0.17 1.55 16 19 C 0.02 0.65 5.34 -27.88 -0.15 0.50 16 20 C -0.53 -14.57 9.11 -34.44 -0.31 -14.88 16 21 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 22 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 23 N -0.89 -26.31 13.29 55.43 0.74 -25.57 16 24 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 25 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 26 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 27 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 28 C -0.19 -2.76 9.90 -39.25 -0.39 -3.15 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.30 8.11 -51.93 -0.42 -0.12 16 32 H 0.06 0.28 8.11 -51.93 -0.42 -0.14 16 33 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.09 0.59 7.86 -51.93 -0.41 0.18 16 35 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.41 2.59 8.82 -40.82 -0.36 2.23 16 37 H 0.13 1.76 6.41 -52.49 -0.34 1.42 16 38 H 0.13 1.42 8.06 -52.49 -0.42 0.99 16 39 H 0.13 2.02 6.29 -52.49 -0.33 1.69 16 40 H 0.05 1.06 7.66 -51.93 -0.40 0.66 16 41 H 0.05 1.04 7.66 -51.93 -0.40 0.65 16 42 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 45 H 0.13 1.72 8.06 -52.48 -0.42 1.29 16 LS Contribution 372.17 15.07 5.61 5.61 Total: -1.00 -33.28 372.17 -8.61 -41.89 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -6.73 Total: 0.35 kcal Atomic # 6 Polarization: -11.69 SS G_CDS: -2.63 Total: -14.32 kcal Atomic # 7 Polarization: -32.77 SS G_CDS: 0.68 Total: -32.09 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: -0.52 Total: -17.60 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.28 -8.61 -41.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092304290.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.519 kcal (2) G-P(sol) polarization free energy of solvation -33.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds