Wall clock time and date at job start Tue Mar 31 2020 12:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 110.42166 * 2 1 4 4 O 1.44424 * 110.37584 * 122.30881 * 2 1 3 5 5 C 1.44430 * 105.27983 * 159.34001 * 4 2 1 6 6 C 1.54478 * 104.79908 * 319.49275 * 5 4 2 7 7 C 1.54482 * 110.37201 * 237.68785 * 2 1 3 8 8 H 1.08998 * 110.62628 * 335.89632 * 7 2 1 9 9 C 1.50700 * 110.50960 * 98.54174 * 7 2 1 10 10 O 1.21290 * 120.00375 * 356.10309 * 9 7 2 11 11 N 1.34778 * 119.99815 * 176.09507 * 9 7 2 12 12 C 1.39921 * 119.99667 * 184.62560 * 11 9 7 13 13 C 1.38930 * 120.03907 * 144.93168 * 12 11 9 14 14 C 1.38130 * 120.04177 * 179.97438 * 13 12 11 15 15 C 1.38209 * 120.11793 * 0.02562 * 14 13 12 16 16 C 1.38765 * 120.08979 * 359.69686 * 15 14 13 17 17 O 1.35906 * 120.02141 * 180.27458 * 16 15 14 18 18 C 1.42895 * 116.99775 * 0.27958 * 17 16 15 19 19 C 1.53000 * 109.46916 * 179.97438 * 18 17 16 20 20 C 1.50703 * 109.47439 * 179.97438 * 19 18 17 21 21 H 1.08007 * 119.99438 * 0.02562 * 20 19 18 22 22 C 1.37874 * 120.00300 * 180.02562 * 20 19 18 23 23 N 1.31513 * 119.99801 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00012 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.46984 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46952 * 120.00507 * 24 22 20 27 27 H 1.48502 * 109.47079 * 239.99997 * 24 22 20 28 28 C 1.38620 * 119.96027 * 0.55827 * 16 15 14 29 29 H 1.08994 * 109.47074 * 182.31558 * 1 2 3 30 30 H 1.09002 * 109.46808 * 302.30726 * 1 2 3 31 31 H 1.08996 * 109.47155 * 62.31131 * 1 2 3 32 32 H 1.08994 * 110.37315 * 200.65876 * 5 4 2 33 33 H 1.08996 * 110.36962 * 78.31751 * 5 4 2 34 34 H 1.09009 * 110.50734 * 265.33074 * 6 5 4 35 35 H 1.09004 * 110.62732 * 142.68015 * 6 5 4 36 36 H 0.97003 * 120.00123 * 4.63140 * 11 9 7 37 37 H 1.08003 * 119.97965 * 359.95737 * 13 12 11 38 38 H 1.08000 * 119.94036 * 179.97438 * 14 13 12 39 39 H 1.08002 * 119.95148 * 180.02562 * 15 14 13 40 40 H 1.08993 * 109.47553 * 299.99930 * 18 17 16 41 41 H 1.09006 * 109.47207 * 60.00164 * 18 17 16 42 42 H 1.08993 * 109.47445 * 300.00600 * 19 18 17 43 43 H 1.09006 * 109.46998 * 60.00669 * 19 18 17 44 44 H 0.97000 * 119.99955 * 179.97438 * 23 22 20 45 45 H 1.07998 * 120.06764 * 179.74799 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 8 2.0328 -0.7236 1.1443 5 6 3.3874 -1.0872 0.7995 6 6 3.3177 -1.5057 -0.6859 7 6 2.0678 -0.7741 -1.2239 8 1 1.3285 -1.4919 -1.5794 9 6 2.4481 0.1800 -2.3267 10 8 2.2444 1.3687 -2.1974 11 7 3.0147 -0.2876 -3.4567 12 6 3.4562 0.6055 -4.4392 13 6 4.5955 0.3169 -5.1800 14 6 5.0311 1.1982 -6.1503 15 6 4.3355 2.3690 -6.3864 16 6 3.1937 2.6597 -5.6535 17 8 2.5077 3.8087 -5.8906 18 6 3.0154 4.6681 -6.9131 19 6 2.1179 5.9012 -7.0350 20 6 2.6537 6.8080 -8.1129 21 1 3.5450 6.5320 -8.6569 22 6 2.0061 7.9897 -8.4046 23 7 0.9211 8.3258 -7.7418 24 14 2.6699 9.1132 -9.7412 25 1 3.8920 8.5112 -10.3321 26 1 1.6419 9.2850 -10.7991 27 1 3.0029 10.4365 -9.1553 28 6 2.7564 1.7803 -4.6752 29 1 -0.3633 -1.0268 0.0415 30 1 -0.3633 0.5493 0.8686 31 1 -0.3633 0.4775 -0.9099 32 1 3.7242 -1.9223 1.4136 33 1 4.0525 -0.2324 0.9220 34 1 3.1954 -2.5854 -0.7731 35 1 4.2106 -1.1791 -1.2192 36 1 3.1164 -1.2431 -3.5888 37 1 5.1411 -0.5970 -4.9969 38 1 5.9172 0.9724 -6.7250 39 1 4.6783 3.0560 -7.1460 40 1 4.0280 4.9793 -6.6565 41 1 3.0292 4.1338 -7.8631 42 1 1.1055 5.5898 -7.2917 43 1 2.1038 6.4357 -6.0851 44 1 0.4656 9.1574 -7.9468 45 1 1.8703 2.0068 -4.1010 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092304293.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:30 Heat of formation + Delta-G solvation = -125.900502 kcal Electronic energy + Delta-G solvation = -25994.983459 eV Core-core repulsion = 22169.459710 eV Total energy + Delta-G solvation = -3825.523749 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.06346 -40.94818 -39.81524 -38.37913 -35.83984 -35.39294 -33.65819 -32.61475 -32.48853 -30.99491 -30.22042 -27.54381 -26.99106 -24.65393 -23.57370 -23.36658 -23.06267 -21.98200 -21.09943 -19.74624 -18.69708 -18.29017 -17.38537 -17.16540 -16.96692 -16.87822 -16.83261 -16.55523 -16.37126 -16.15825 -15.71675 -14.81325 -14.70352 -14.48345 -14.39472 -14.35978 -14.29938 -13.53415 -13.38540 -13.33566 -13.21770 -12.83289 -12.76913 -12.66612 -12.57024 -12.35145 -12.20475 -12.11822 -11.83181 -11.75864 -11.60625 -11.41927 -11.25125 -10.99702 -10.69845 -10.65220 -9.46577 -9.04718 -8.28394 -6.42795 0.20543 0.46934 1.39697 1.41403 1.43088 1.54941 1.81159 2.27858 2.50748 2.79434 2.81936 3.05942 3.42292 3.54579 3.63778 3.90274 4.00875 4.13906 4.15824 4.19953 4.24143 4.24394 4.27180 4.34413 4.43467 4.56402 4.57913 4.64162 4.69280 4.75377 4.82637 4.91130 5.00833 5.03087 5.17910 5.24065 5.26476 5.31024 5.39577 5.42703 5.50281 5.66380 5.78496 5.88966 6.04645 6.32506 6.54340 6.72409 7.03335 7.27629 8.85342 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.019885 B = 0.002310 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.768783 B =12118.365564 C =13215.719616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.080 3.920 3 H 0.057 0.943 4 O -0.386 6.386 5 C 0.035 3.965 6 C -0.138 4.138 7 C -0.130 4.130 8 H 0.145 0.855 9 C 0.516 3.484 10 O -0.558 6.558 11 N -0.651 5.651 12 C 0.175 3.825 13 C -0.171 4.171 14 C -0.054 4.054 15 C -0.234 4.234 16 C 0.121 3.879 17 O -0.347 6.347 18 C 0.085 3.915 19 C 0.026 3.974 20 C -0.544 4.544 21 H 0.074 0.926 22 C -0.002 4.002 23 N -0.933 5.933 24 Si 0.980 3.020 25 H -0.255 1.255 26 H -0.276 1.276 27 H -0.277 1.277 28 C -0.187 4.187 29 H 0.082 0.918 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.120 0.880 33 H 0.051 0.949 34 H 0.123 0.877 35 H 0.089 0.911 36 H 0.434 0.566 37 H 0.171 0.829 38 H 0.166 0.834 39 H 0.132 0.868 40 H 0.061 0.939 41 H 0.065 0.935 42 H -0.003 1.003 43 H -0.006 1.006 44 H 0.267 0.733 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.791 -28.672 11.914 32.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.022 3.978 3 H 0.075 0.925 4 O -0.305 6.305 5 C -0.042 4.042 6 C -0.176 4.176 7 C -0.152 4.152 8 H 0.162 0.838 9 C 0.305 3.695 10 O -0.435 6.435 11 N -0.298 5.298 12 C 0.080 3.920 13 C -0.191 4.191 14 C -0.072 4.072 15 C -0.253 4.253 16 C 0.075 3.925 17 O -0.261 6.261 18 C 0.011 3.989 19 C -0.011 4.011 20 C -0.581 4.581 21 H 0.092 0.908 22 C -0.200 4.200 23 N -0.573 5.573 24 Si 0.803 3.197 25 H -0.178 1.178 26 H -0.202 1.202 27 H -0.203 1.203 28 C -0.208 4.208 29 H 0.101 0.899 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.138 0.862 33 H 0.070 0.930 34 H 0.141 0.859 35 H 0.108 0.892 36 H 0.275 0.725 37 H 0.189 0.811 38 H 0.184 0.816 39 H 0.150 0.850 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.015 0.985 43 H 0.012 0.988 44 H 0.076 0.924 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 8.210 -27.716 12.379 31.446 hybrid contribution -0.144 1.147 -0.773 1.391 sum 8.066 -26.569 11.606 30.094 Atomic orbital electron populations 1.21778 0.91985 1.03731 1.02616 1.22854 0.96375 0.95037 0.83584 0.92504 1.89142 1.28329 1.74601 1.38444 1.23636 0.83669 1.00840 0.96024 1.23039 0.95857 1.03075 0.95581 1.22792 1.01702 0.97439 0.93236 0.83780 1.21171 0.75908 0.89213 0.83241 1.90799 1.53143 1.19112 1.80449 1.43305 1.59964 1.10594 1.15969 1.17442 0.93582 0.90229 0.90710 1.21152 0.95475 1.03288 0.99157 1.21158 0.98908 0.91126 0.96021 1.21545 0.97485 1.02010 1.04272 1.19306 0.92103 0.86338 0.94763 1.86099 1.53122 1.30476 1.56406 1.22889 0.97947 0.89824 0.88240 1.18987 0.94608 0.91149 0.96330 1.21421 1.12231 1.05073 1.19416 0.90807 1.26113 0.94957 0.99666 0.99263 1.70146 1.19818 1.24548 1.42758 0.85180 0.78753 0.77874 0.77892 1.17847 1.20160 1.20282 1.20395 1.03442 0.96577 1.00423 0.89904 0.91930 0.91554 0.86166 0.93021 0.85907 0.89225 0.72543 0.81125 0.81613 0.85047 0.92082 0.91668 0.98489 0.98793 0.92434 0.86792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 9.52 71.98 0.69 -1.83 16 2 C 0.08 1.55 3.25 31.10 0.10 1.66 16 3 H 0.06 1.48 6.96 -2.39 -0.02 1.47 16 4 O -0.39 -7.31 11.34 -148.98 -1.69 -9.00 16 5 C 0.03 0.41 7.63 72.48 0.55 0.97 16 6 C -0.14 -1.05 6.68 31.61 0.21 -0.84 16 7 C -0.13 -1.75 3.05 -10.53 -0.03 -1.79 16 8 H 0.14 1.14 7.88 -2.39 -0.02 1.12 16 9 C 0.52 11.00 6.82 87.66 0.60 11.60 16 10 O -0.56 -18.54 12.92 -3.06 -0.04 -18.58 16 11 N -0.65 -10.83 5.22 -303.54 -1.58 -12.42 16 12 C 0.18 4.27 6.30 38.14 0.24 4.51 16 13 C -0.17 -3.12 9.96 22.41 0.22 -2.90 16 14 C -0.05 -1.14 10.03 22.24 0.22 -0.91 16 15 C -0.23 -7.12 9.04 22.39 0.20 -6.92 16 16 C 0.12 4.64 6.68 22.49 0.15 4.79 16 17 O -0.35 -16.22 10.13 -92.49 -0.94 -17.16 16 18 C 0.09 3.93 4.68 71.98 0.34 4.27 16 19 C 0.03 1.52 5.34 29.85 0.16 1.68 16 20 C -0.54 -31.46 9.11 25.60 0.23 -31.23 16 21 H 0.07 3.95 7.74 -2.91 -0.02 3.93 16 22 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 23 N -0.93 -58.41 13.29 21.45 0.28 -58.12 16 24 Si 0.98 44.24 29.54 68.60 2.03 46.27 16 25 H -0.25 -10.73 7.11 99.48 0.71 -10.02 16 26 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 27 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 28 C -0.19 -6.60 8.63 22.49 0.19 -6.41 16 29 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.12 0.17 8.14 -2.38 -0.02 0.15 16 35 H 0.09 0.61 7.68 -2.38 -0.02 0.60 16 36 H 0.43 2.92 8.82 -92.71 -0.82 2.11 16 37 H 0.17 1.51 8.06 -2.91 -0.02 1.48 16 38 H 0.17 2.20 8.06 -2.91 -0.02 2.18 16 39 H 0.13 3.92 6.29 -2.91 -0.02 3.90 16 40 H 0.06 2.64 7.65 -2.39 -0.02 2.62 16 41 H 0.07 2.77 7.67 -2.38 -0.02 2.75 16 42 H 0.00 -0.21 8.14 -2.39 -0.02 -0.22 16 43 H -0.01 -0.40 8.14 -2.38 -0.02 -0.42 16 44 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 45 H 0.11 4.64 6.22 -2.91 -0.02 4.62 16 Total: -1.00 -81.80 372.43 2.78 -79.01 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: 0.18 Total: 13.00 kcal Atomic # 6 Polarization: -27.55 SS G_CDS: 4.54 Total: -23.00 kcal Atomic # 7 Polarization: -69.24 SS G_CDS: -1.30 Total: -70.54 kcal Atomic # 8 Polarization: -42.07 SS G_CDS: -2.67 Total: -44.74 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -81.80 2.78 -79.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092304293.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.887 kcal (2) G-P(sol) polarization free energy of solvation -81.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds