Wall clock time and date at job start Tue Mar 31 2020 12:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35987 * 116.99866 * 2 1 4 4 C 1.38719 * 120.06521 * 359.97438 * 3 2 1 5 5 C 1.37951 * 119.89454 * 179.97438 * 4 3 2 6 6 C 1.39120 * 120.29869 * 359.97438 * 5 4 3 7 7 C 1.38357 * 119.78015 * 0.15729 * 6 5 4 8 8 C 1.38511 * 119.88205 * 359.78030 * 7 6 5 9 9 C 1.50776 * 121.41236 * 179.70451 * 7 6 5 10 10 C 1.53063 * 109.68275 * 17.80196 * 9 7 6 11 11 H 1.09006 * 109.70157 * 71.43489 * 10 9 7 12 12 C 1.50708 * 109.70555 * 192.03845 * 10 9 7 13 13 O 1.21274 * 119.99554 * 8.76080 * 12 10 9 14 14 N 1.34771 * 119.99943 * 188.75983 * 12 10 9 15 15 C 1.46503 * 119.99773 * 184.20063 * 14 12 10 16 16 C 1.46500 * 120.00283 * 4.20060 * 14 12 10 17 17 H 1.08992 * 109.47068 * 354.37817 * 16 14 12 18 18 C 1.53002 * 109.47045 * 234.37722 * 16 14 12 19 19 C 1.50704 * 109.47096 * 114.37680 * 16 14 12 20 20 H 1.08006 * 119.99468 * 0.02562 * 19 16 14 21 21 C 1.37875 * 120.00165 * 179.97438 * 19 16 14 22 22 N 1.31514 * 119.99808 * 359.97438 * 21 19 16 23 23 Si 1.86790 * 120.00115 * 180.02562 * 21 19 16 24 24 H 1.48502 * 109.47468 * 59.99951 * 23 21 19 25 25 H 1.48496 * 109.47212 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47311 * 299.99911 * 23 21 19 27 27 C 1.53415 * 108.28123 * 311.73561 * 10 9 7 28 28 O 1.35943 * 118.44043 * 180.20290 * 6 5 4 29 29 H 1.09000 * 109.47086 * 300.00423 * 1 2 3 30 30 H 1.08999 * 109.46671 * 60.00380 * 1 2 3 31 31 H 1.09001 * 109.46995 * 180.02562 * 1 2 3 32 32 H 1.08001 * 120.05849 * 359.95923 * 4 3 2 33 33 H 1.08001 * 119.84935 * 180.02562 * 5 4 3 34 34 H 1.08001 * 119.85834 * 180.15192 * 8 7 6 35 35 H 1.08999 * 109.43624 * 257.73579 * 9 7 6 36 36 H 1.08998 * 109.43988 * 137.87213 * 9 7 6 37 37 H 1.08993 * 109.47234 * 84.75834 * 15 14 12 38 38 H 1.08995 * 109.47032 * 204.75912 * 15 14 12 39 39 H 1.09007 * 109.46868 * 324.76165 * 15 14 12 40 40 H 1.08995 * 109.46942 * 60.00125 * 18 16 14 41 41 H 1.09001 * 109.46524 * 180.02562 * 18 16 14 42 42 H 1.09007 * 109.46811 * 299.99875 * 18 16 14 43 43 H 0.96995 * 120.00083 * 179.97438 * 22 21 19 44 44 H 1.09003 * 109.68420 * 184.46633 * 27 10 9 45 45 H 1.08992 * 109.68577 * 304.98559 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2922 2.3759 -0.0005 5 6 1.9221 3.6032 0.0000 6 6 3.3112 3.6791 0.0016 7 6 4.0629 2.5176 -0.0006 8 6 3.4296 1.2858 0.0002 9 6 5.5702 2.5570 -0.0056 10 6 6.0511 3.9423 0.4331 11 1 5.8673 4.0745 1.4994 12 6 7.5247 4.0819 0.1498 13 8 8.1012 3.2322 -0.4955 14 7 8.2018 5.1509 0.6136 15 6 9.6120 5.3340 0.2614 16 6 7.5276 6.1299 1.4700 17 1 6.4683 5.8831 1.5396 18 6 7.6871 7.5281 0.8696 19 6 8.1417 6.1009 2.8459 20 1 8.9533 5.4215 3.0608 21 6 7.6681 6.9425 3.8301 22 7 6.6809 7.7708 3.5679 23 14 8.4298 6.9071 5.5353 24 1 9.8731 7.2431 5.4399 25 1 7.7463 7.8993 6.4033 26 1 8.2750 5.5502 6.1185 27 6 5.2697 4.9969 -0.3611 28 8 3.8924 4.9081 0.0063 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.2135 2.3217 -0.0016 33 1 1.3342 4.5092 0.0000 34 1 4.0168 0.3793 0.0009 35 1 5.9351 2.3480 -1.0112 36 1 5.9550 1.8046 0.6828 37 1 9.6833 5.8343 -0.7043 38 1 10.1006 5.9421 1.0226 39 1 10.1013 4.3616 0.2039 40 1 7.2430 7.5490 -0.1256 41 1 7.1859 8.2565 1.5070 42 1 8.7466 7.7749 0.7999 43 1 6.3475 8.3626 4.2603 44 1 5.6495 5.9908 -0.1244 45 1 5.3783 4.8072 -1.4289 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103442593.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:47 Heat of formation + Delta-G solvation = -84.817799 kcal Electronic energy + Delta-G solvation = -27531.555439 eV Core-core repulsion = 23707.813170 eV Total energy + Delta-G solvation = -3823.742269 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.87505 -39.61712 -38.67327 -36.32631 -35.70164 -33.93968 -32.71120 -30.80049 -29.89946 -29.23220 -27.34528 -26.65214 -25.55232 -25.19950 -23.46372 -22.58352 -21.47956 -20.20334 -18.22543 -17.83382 -17.62334 -16.94962 -16.55956 -16.30970 -15.80339 -15.22451 -15.06833 -14.69644 -14.68080 -14.24230 -14.00423 -13.63283 -13.46148 -13.18152 -13.01427 -12.88370 -12.71369 -12.54911 -12.13321 -11.97025 -11.75609 -11.67065 -11.37521 -11.11777 -10.98148 -10.91232 -10.80381 -10.76726 -10.41937 -10.33418 -10.25698 -10.17464 -9.43885 -9.12747 -8.78274 -8.57140 -7.74221 -7.63532 -6.21366 -4.30749 1.27050 1.51904 3.17098 3.18899 3.21701 3.27167 3.30355 3.50055 3.73472 3.89127 4.29042 4.72471 4.76332 4.87427 4.92900 4.98413 5.00583 5.09330 5.12286 5.16083 5.28506 5.39436 5.45631 5.71294 5.74747 5.82956 5.93329 6.00281 6.08595 6.13533 6.17765 6.28935 6.33727 6.40984 6.50769 6.53135 6.59660 6.63545 6.80651 7.12118 7.29741 7.31198 7.60676 7.64301 7.80700 8.05407 8.32398 8.68707 8.88443 9.37751 10.82921 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.015235 B = 0.003611 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.425919 B = 7752.305023 C = 8468.788465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.320 6.320 3 C 0.089 3.911 4 C -0.177 4.177 5 C -0.110 4.110 6 C 0.101 3.899 7 C -0.112 4.112 8 C -0.115 4.115 9 C -0.060 4.060 10 C -0.144 4.144 11 H 0.118 0.882 12 C 0.519 3.481 13 O -0.569 6.569 14 N -0.589 5.589 15 C 0.094 3.906 16 C 0.247 3.753 17 H 0.059 0.941 18 C -0.152 4.152 19 C -0.534 4.534 20 H 0.061 0.939 21 C 0.069 3.931 22 N -0.885 5.885 23 Si 0.898 3.102 24 H -0.276 1.276 25 H -0.285 1.285 26 H -0.276 1.276 27 C 0.073 3.927 28 O -0.305 6.305 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.096 0.904 32 H 0.131 0.869 33 H 0.133 0.867 34 H 0.132 0.868 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.041 0.959 38 H 0.077 0.923 39 H 0.059 0.941 40 H 0.013 0.987 41 H 0.097 0.903 42 H 0.035 0.965 43 H 0.266 0.734 44 H 0.124 0.876 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.004 -7.923 -7.308 14.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.234 6.234 3 C 0.045 3.955 4 C -0.196 4.196 5 C -0.129 4.129 6 C 0.056 3.944 7 C -0.113 4.113 8 C -0.134 4.134 9 C -0.097 4.097 10 C -0.165 4.165 11 H 0.135 0.865 12 C 0.306 3.694 13 O -0.451 6.451 14 N -0.319 5.319 15 C -0.049 4.049 16 C 0.146 3.854 17 H 0.077 0.923 18 C -0.211 4.211 19 C -0.573 4.573 20 H 0.079 0.921 21 C -0.135 4.135 22 N -0.523 5.523 23 Si 0.726 3.274 24 H -0.202 1.202 25 H -0.211 1.211 26 H -0.201 1.201 27 C -0.002 4.002 28 O -0.219 6.219 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.115 0.885 32 H 0.149 0.851 33 H 0.151 0.849 34 H 0.150 0.850 35 H 0.110 0.890 36 H 0.106 0.894 37 H 0.060 0.940 38 H 0.096 0.904 39 H 0.077 0.923 40 H 0.032 0.968 41 H 0.115 0.885 42 H 0.054 0.946 43 H 0.076 0.924 44 H 0.141 0.859 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.803 -8.173 -7.486 14.796 hybrid contribution 0.319 0.176 1.121 1.179 sum -9.484 -7.996 -6.365 13.943 Atomic orbital electron populations 1.22998 0.78845 1.03589 1.01205 1.86061 1.20957 1.26885 1.89516 1.18758 0.92112 0.84092 1.00547 1.20945 0.99754 0.91495 1.07397 1.20350 0.91565 0.97955 1.03014 1.18676 0.91851 0.84344 0.99544 1.19717 0.96069 0.91866 1.03667 1.20087 0.91243 0.97521 1.04554 1.20341 0.89128 0.96415 1.03844 1.21921 0.93742 0.96790 1.04035 0.86455 1.20007 0.88329 0.81617 0.79440 1.90597 1.70338 1.41742 1.42385 1.48289 1.11196 1.24105 1.48287 1.21413 0.82527 1.01348 0.99631 1.19230 0.93853 0.84341 0.87967 0.92326 1.22155 1.00313 1.00869 0.97715 1.21302 1.19539 1.21811 0.94640 0.92062 1.24876 0.94790 0.94838 0.98960 1.69831 1.25650 1.22748 1.34036 0.86544 0.79375 0.77992 0.83492 1.20156 1.21087 1.20147 1.23082 0.78304 1.00944 0.97872 1.86082 1.26101 1.25694 1.83981 0.92789 0.92859 0.88547 0.85133 0.84882 0.84962 0.88973 0.89449 0.94048 0.90389 0.92272 0.96788 0.88489 0.94583 0.92394 0.85859 0.91778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.32 -3.85 10.50 -19.70 -0.21 -4.06 16 3 C 0.09 1.18 6.68 -39.30 -0.26 0.92 16 4 C -0.18 -2.15 9.03 -39.51 -0.36 -2.51 16 5 C -0.11 -1.51 9.93 -39.36 -0.39 -1.90 16 6 C 0.10 1.61 6.47 -39.21 -0.25 1.35 16 7 C -0.11 -1.73 5.75 -104.44 -0.60 -2.33 16 8 C -0.12 -1.63 9.60 -39.38 -0.38 -2.01 16 9 C -0.06 -0.96 4.75 -27.81 -0.13 -1.09 16 10 C -0.14 -2.57 1.86 -91.52 -0.17 -2.74 16 11 H 0.12 2.30 7.20 -51.93 -0.37 1.93 16 12 C 0.52 10.44 6.96 -10.98 -0.08 10.37 16 13 O -0.57 -12.37 15.38 5.56 0.09 -12.29 16 14 N -0.59 -12.12 2.75 -175.26 -0.48 -12.61 16 15 C 0.09 1.74 9.30 59.85 0.56 2.30 16 16 C 0.25 5.52 1.69 -69.08 -0.12 5.40 16 17 H 0.06 1.37 4.53 -51.93 -0.24 1.13 16 18 C -0.15 -3.26 8.67 37.16 0.32 -2.94 16 19 C -0.53 -13.41 8.08 -34.44 -0.28 -13.69 16 20 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 21 C 0.07 1.74 5.30 -17.82 -0.09 1.65 16 22 N -0.89 -23.04 11.32 55.43 0.63 -22.41 16 23 Si 0.90 20.12 29.54 -169.99 -5.02 15.10 16 24 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 25 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 27 C 0.07 1.23 5.89 37.37 0.22 1.45 16 28 O -0.30 -5.25 10.27 -19.56 -0.20 -5.45 16 29 H 0.05 0.37 7.67 -51.93 -0.40 -0.03 16 30 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 31 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.13 1.20 6.31 -52.49 -0.33 0.87 16 33 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 34 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 35 H 0.09 1.48 7.56 -51.93 -0.39 1.09 16 36 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 37 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.08 1.45 7.30 -51.93 -0.38 1.07 16 39 H 0.06 1.08 7.53 -51.93 -0.39 0.69 16 40 H 0.01 0.26 7.63 -51.93 -0.40 -0.14 16 41 H 0.10 2.30 6.07 -51.93 -0.31 1.98 16 42 H 0.04 0.74 7.39 -51.93 -0.38 0.36 16 43 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 44 H 0.12 2.17 5.47 -51.93 -0.28 1.89 16 45 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 357.98 15.07 5.39 5.39 Total: -1.00 -28.58 357.98 -7.18 -35.76 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -6.36 Total: 5.10 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: -1.02 Total: -4.54 kcal Atomic # 7 Polarization: -35.16 SS G_CDS: 0.14 Total: -35.02 kcal Atomic # 8 Polarization: -21.47 SS G_CDS: -0.32 Total: -21.80 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -28.58 -7.18 -35.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103442593.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.056 kcal (2) G-P(sol) polarization free energy of solvation -28.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds