Wall clock time and date at job start Tue Mar 31 2020 12:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35987 * 116.99866 * 2 1 4 4 C 1.38719 * 120.06521 * 359.97438 * 3 2 1 5 5 C 1.37951 * 119.89454 * 179.97438 * 4 3 2 6 6 C 1.39120 * 120.29869 * 359.97438 * 5 4 3 7 7 C 1.38357 * 119.78015 * 0.15729 * 6 5 4 8 8 C 1.38511 * 119.88205 * 359.78030 * 7 6 5 9 9 C 1.50776 * 121.41236 * 179.70451 * 7 6 5 10 10 C 1.53063 * 109.68275 * 17.80196 * 9 7 6 11 11 H 1.09006 * 109.70157 * 71.43489 * 10 9 7 12 12 C 1.50708 * 109.70555 * 192.03845 * 10 9 7 13 13 O 1.21274 * 119.99554 * 8.76080 * 12 10 9 14 14 N 1.34771 * 119.99943 * 188.75983 * 12 10 9 15 15 C 1.46503 * 119.99773 * 184.20063 * 14 12 10 16 16 C 1.46500 * 120.00283 * 4.20060 * 14 12 10 17 17 H 1.08992 * 109.47068 * 354.37817 * 16 14 12 18 18 C 1.53002 * 109.47045 * 234.37722 * 16 14 12 19 19 C 1.50704 * 109.47096 * 114.37680 * 16 14 12 20 20 H 1.08006 * 119.99468 * 0.02562 * 19 16 14 21 21 C 1.37875 * 120.00165 * 179.97438 * 19 16 14 22 22 N 1.31514 * 119.99808 * 359.97438 * 21 19 16 23 23 Si 1.86790 * 120.00115 * 180.02562 * 21 19 16 24 24 H 1.48502 * 109.47468 * 59.99951 * 23 21 19 25 25 H 1.48496 * 109.47212 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47311 * 299.99911 * 23 21 19 27 27 C 1.53415 * 108.28123 * 311.73561 * 10 9 7 28 28 O 1.35943 * 118.44043 * 180.20290 * 6 5 4 29 29 H 1.09000 * 109.47086 * 300.00423 * 1 2 3 30 30 H 1.08999 * 109.46671 * 60.00380 * 1 2 3 31 31 H 1.09001 * 109.46995 * 180.02562 * 1 2 3 32 32 H 1.08001 * 120.05849 * 359.95923 * 4 3 2 33 33 H 1.08001 * 119.84935 * 180.02562 * 5 4 3 34 34 H 1.08001 * 119.85834 * 180.15192 * 8 7 6 35 35 H 1.08999 * 109.43624 * 257.73579 * 9 7 6 36 36 H 1.08998 * 109.43988 * 137.87213 * 9 7 6 37 37 H 1.08993 * 109.47234 * 84.75834 * 15 14 12 38 38 H 1.08995 * 109.47032 * 204.75912 * 15 14 12 39 39 H 1.09007 * 109.46868 * 324.76165 * 15 14 12 40 40 H 1.08995 * 109.46942 * 60.00125 * 18 16 14 41 41 H 1.09001 * 109.46524 * 180.02562 * 18 16 14 42 42 H 1.09007 * 109.46811 * 299.99875 * 18 16 14 43 43 H 0.96995 * 120.00083 * 179.97438 * 22 21 19 44 44 H 1.09003 * 109.68420 * 184.46633 * 27 10 9 45 45 H 1.08992 * 109.68577 * 304.98559 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2922 2.3759 -0.0005 5 6 1.9221 3.6032 0.0000 6 6 3.3112 3.6791 0.0016 7 6 4.0629 2.5176 -0.0006 8 6 3.4296 1.2858 0.0002 9 6 5.5702 2.5570 -0.0056 10 6 6.0511 3.9423 0.4331 11 1 5.8673 4.0745 1.4994 12 6 7.5247 4.0819 0.1498 13 8 8.1012 3.2322 -0.4955 14 7 8.2018 5.1509 0.6136 15 6 9.6120 5.3340 0.2614 16 6 7.5276 6.1299 1.4700 17 1 6.4683 5.8831 1.5396 18 6 7.6871 7.5281 0.8696 19 6 8.1417 6.1009 2.8459 20 1 8.9533 5.4215 3.0608 21 6 7.6681 6.9425 3.8301 22 7 6.6809 7.7708 3.5679 23 14 8.4298 6.9071 5.5353 24 1 9.8731 7.2431 5.4399 25 1 7.7463 7.8993 6.4033 26 1 8.2750 5.5502 6.1185 27 6 5.2697 4.9969 -0.3611 28 8 3.8924 4.9081 0.0063 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.2135 2.3217 -0.0016 33 1 1.3342 4.5092 0.0000 34 1 4.0168 0.3793 0.0009 35 1 5.9351 2.3480 -1.0112 36 1 5.9550 1.8046 0.6828 37 1 9.6833 5.8343 -0.7043 38 1 10.1006 5.9421 1.0226 39 1 10.1013 4.3616 0.2039 40 1 7.2430 7.5490 -0.1256 41 1 7.1859 8.2565 1.5070 42 1 8.7466 7.7749 0.7999 43 1 6.3475 8.3626 4.2603 44 1 5.6495 5.9908 -0.1244 45 1 5.3783 4.8072 -1.4289 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103442593.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:46 Heat of formation + Delta-G solvation = -100.437807 kcal Electronic energy + Delta-G solvation = -27532.232773 eV Core-core repulsion = 23707.813170 eV Total energy + Delta-G solvation = -3824.419603 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.12499 -40.87525 -39.92935 -37.53368 -37.29370 -35.25287 -34.58403 -31.98349 -31.05830 -30.88117 -28.37546 -27.83720 -27.29778 -26.63125 -24.77208 -23.66811 -23.17871 -21.41517 -19.78603 -18.93754 -18.81500 -18.58365 -18.01598 -17.68745 -16.83454 -16.63867 -16.43678 -16.31161 -15.93066 -15.46784 -15.39821 -15.09834 -14.67347 -14.52927 -14.28263 -14.07098 -14.02444 -13.70811 -13.67993 -13.49885 -13.07044 -12.92328 -12.80842 -12.74432 -12.64334 -12.48833 -12.20149 -12.13113 -12.01283 -11.96304 -11.59629 -11.31285 -11.24844 -10.77061 -10.49808 -9.86804 -9.43612 -8.72448 -8.15067 -6.30143 0.21082 0.43052 1.42713 1.44372 1.50360 1.58456 2.11876 2.34128 2.42586 2.46523 2.69117 3.13125 3.43022 3.54851 3.61956 3.80115 3.87127 3.98537 4.12680 4.26812 4.38102 4.45099 4.46422 4.46605 4.54167 4.66189 4.67234 4.70018 4.76364 4.85930 4.90149 4.92377 4.95064 4.96740 5.01863 5.04037 5.29836 5.37257 5.40804 5.54605 5.55786 5.70788 5.98188 6.19354 6.30745 6.52918 6.58865 6.79624 7.20912 7.42213 8.87240 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.015235 B = 0.003611 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.425919 B = 7752.305023 C = 8468.788465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.334 6.334 3 C 0.091 3.909 4 C -0.168 4.168 5 C -0.111 4.111 6 C 0.071 3.929 7 C -0.122 4.122 8 C -0.127 4.127 9 C -0.052 4.052 10 C -0.137 4.137 11 H 0.096 0.904 12 C 0.518 3.482 13 O -0.585 6.585 14 N -0.594 5.594 15 C 0.093 3.907 16 C 0.254 3.746 17 H 0.048 0.952 18 C -0.142 4.142 19 C -0.548 4.548 20 H 0.051 0.949 21 C 0.030 3.970 22 N -0.904 5.904 23 Si 0.950 3.050 24 H -0.272 1.272 25 H -0.282 1.282 26 H -0.279 1.279 27 C 0.081 3.919 28 O -0.318 6.318 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.118 0.882 32 H 0.165 0.835 33 H 0.149 0.851 34 H 0.140 0.860 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.061 0.939 38 H 0.075 0.925 39 H 0.059 0.941 40 H 0.034 0.966 41 H 0.075 0.925 42 H 0.038 0.962 43 H 0.266 0.734 44 H 0.113 0.887 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.417 -8.630 -7.607 16.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.249 6.249 3 C 0.047 3.953 4 C -0.186 4.186 5 C -0.130 4.130 6 C 0.026 3.974 7 C -0.123 4.123 8 C -0.146 4.146 9 C -0.089 4.089 10 C -0.158 4.158 11 H 0.114 0.886 12 C 0.306 3.694 13 O -0.468 6.468 14 N -0.323 5.323 15 C -0.050 4.050 16 C 0.152 3.848 17 H 0.066 0.934 18 C -0.200 4.200 19 C -0.587 4.587 20 H 0.069 0.931 21 C -0.171 4.171 22 N -0.542 5.542 23 Si 0.777 3.223 24 H -0.197 1.197 25 H -0.207 1.207 26 H -0.204 1.204 27 C 0.005 3.995 28 O -0.233 6.233 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.136 0.864 32 H 0.183 0.817 33 H 0.167 0.833 34 H 0.157 0.843 35 H 0.109 0.891 36 H 0.105 0.895 37 H 0.079 0.921 38 H 0.093 0.907 39 H 0.078 0.922 40 H 0.053 0.947 41 H 0.093 0.907 42 H 0.057 0.943 43 H 0.076 0.924 44 H 0.130 0.870 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.219 -8.887 -7.790 16.295 hybrid contribution 0.658 0.291 1.197 1.397 sum -10.560 -8.596 -6.593 15.129 Atomic orbital electron populations 1.23357 0.76440 1.05567 1.02360 1.86057 1.23448 1.26209 1.89166 1.18879 0.91980 0.85069 0.99421 1.21284 1.01395 0.90345 1.05567 1.20634 0.90754 0.99346 1.02243 1.18994 0.92926 0.83860 1.01575 1.19653 0.95417 0.92464 1.04800 1.20207 0.92226 0.97250 1.04921 1.20243 0.90048 0.95077 1.03567 1.21822 0.92557 0.98540 1.02909 0.88609 1.20311 0.89084 0.81076 0.78924 1.90579 1.70919 1.42115 1.43186 1.48311 1.12001 1.23956 1.48071 1.21505 0.81424 1.01556 1.00497 1.19011 0.93168 0.85222 0.87354 0.93447 1.21983 1.00353 0.99441 0.98225 1.21529 1.19372 1.21581 0.96199 0.93122 1.25471 0.95207 0.94682 1.01727 1.69927 1.26374 1.23129 1.34772 0.85728 0.78835 0.77675 0.80109 1.19699 1.20687 1.20448 1.22949 0.78404 0.99840 0.98304 1.86041 1.25845 1.26795 1.84581 0.91743 0.91459 0.86395 0.81740 0.83320 0.84251 0.89127 0.89528 0.92096 0.90664 0.92242 0.94749 0.90667 0.94262 0.92416 0.86954 0.90444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.32 16 2 O -0.33 -7.24 10.50 -93.41 -0.98 -8.22 16 3 C 0.09 2.25 6.68 22.45 0.15 2.40 16 4 C -0.17 -3.63 9.03 22.32 0.20 -3.42 16 5 C -0.11 -2.86 9.93 22.41 0.22 -2.64 16 6 C 0.07 2.24 6.47 22.51 0.15 2.38 16 7 C -0.12 -3.76 5.75 -19.75 -0.11 -3.87 16 8 C -0.13 -3.50 9.60 22.40 0.22 -3.28 16 9 C -0.05 -1.69 4.75 29.89 0.14 -1.55 16 10 C -0.14 -5.02 1.86 -11.38 -0.02 -5.04 16 11 H 0.10 3.92 7.20 -2.38 -0.02 3.91 16 12 C 0.52 21.03 6.96 87.66 0.61 21.64 16 13 O -0.59 -25.45 15.38 -3.01 -0.05 -25.50 16 14 N -0.59 -24.52 2.75 -826.80 -2.28 -26.80 16 15 C 0.09 3.39 9.30 127.77 1.19 4.58 16 16 C 0.25 11.47 1.69 44.25 0.07 11.55 16 17 H 0.05 2.28 4.53 -2.39 -0.01 2.26 16 18 C -0.14 -6.05 8.67 71.98 0.62 -5.42 16 19 C -0.55 -27.78 8.08 25.60 0.21 -27.57 16 20 H 0.05 2.62 7.81 -2.91 -0.02 2.60 16 21 C 0.03 1.55 5.30 84.65 0.45 2.00 16 22 N -0.90 -47.37 11.32 21.45 0.24 -47.13 16 23 Si 0.95 41.23 29.54 68.60 2.03 43.26 16 24 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 25 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 26 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 27 C 0.08 2.74 5.89 72.12 0.42 3.17 16 28 O -0.32 -11.06 10.27 -92.91 -0.95 -12.01 16 29 H 0.06 0.66 7.67 -2.39 -0.02 0.64 16 30 H 0.07 0.64 7.66 -2.39 -0.02 0.62 16 31 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.17 2.36 6.31 -2.91 -0.02 2.34 16 33 H 0.15 3.27 8.06 -2.91 -0.02 3.24 16 34 H 0.14 3.49 8.06 -2.91 -0.02 3.47 16 35 H 0.09 2.94 7.56 -2.39 -0.02 2.92 16 36 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 37 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.07 2.77 7.30 -2.39 -0.02 2.75 16 39 H 0.06 2.15 7.53 -2.38 -0.02 2.14 16 40 H 0.03 1.29 7.63 -2.39 -0.02 1.27 16 41 H 0.07 3.58 6.07 -2.39 -0.01 3.57 16 42 H 0.04 1.60 7.39 -2.38 -0.02 1.58 16 43 H 0.27 13.43 8.31 -92.71 -0.77 12.66 16 44 H 0.11 4.03 5.47 -2.39 -0.01 4.01 16 45 H 0.08 2.38 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -60.43 357.98 4.65 -55.78 By element: Atomic # 1 Polarization: 23.41 SS G_CDS: 1.00 Total: 24.41 kcal Atomic # 6 Polarization: -9.41 SS G_CDS: 5.63 Total: -3.78 kcal Atomic # 7 Polarization: -71.90 SS G_CDS: -2.03 Total: -73.93 kcal Atomic # 8 Polarization: -43.75 SS G_CDS: -1.98 Total: -45.73 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.26 kcal Total: -60.43 4.65 -55.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103442593.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.660 kcal (2) G-P(sol) polarization free energy of solvation -60.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds