Wall clock time and date at job start Tue Mar 31 2020 12:52:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42905 * 1
3 3 C 1.35985 * 116.99800 * 2 1
4 4 C 1.38717 * 120.06624 * 359.97438 * 3 2 1
5 5 C 1.37946 * 119.89546 * 180.09822 * 4 3 2
6 6 C 1.39123 * 120.29608 * 359.97438 * 5 4 3
7 7 C 1.38351 * 119.78494 * 359.85919 * 6 5 4
8 8 C 1.38505 * 119.88096 * 0.20174 * 7 6 5
9 9 C 1.50780 * 121.41504 * 180.22379 * 7 6 5
10 10 C 1.53067 * 109.69357 * 342.29206 * 9 7 6
11 11 H 1.09002 * 109.69733 * 288.48862 * 10 9 7
12 12 C 1.50702 * 109.69739 * 167.93167 * 10 9 7
13 13 O 1.21278 * 120.00382 * 0.55624 * 12 10 9
14 14 N 1.34777 * 119.99599 * 180.56280 * 12 10 9
15 15 C 1.46500 * 120.00314 * 359.97438 * 14 12 10
16 16 C 1.46500 * 119.99749 * 180.02562 * 14 12 10
17 17 H 1.08993 * 109.47332 * 359.97438 * 16 14 12
18 18 C 1.53001 * 109.47354 * 239.99306 * 16 14 12
19 19 C 1.50703 * 109.47080 * 119.99486 * 16 14 12
20 20 H 1.07999 * 120.00263 * 359.97438 * 19 16 14
21 21 C 1.37884 * 119.99926 * 179.97438 * 19 16 14
22 22 N 1.31518 * 119.99815 * 0.02562 * 21 19 16
23 23 Si 1.86794 * 120.00000 * 180.02562 * 21 19 16
24 24 H 1.48496 * 109.47220 * 90.00172 * 23 21 19
25 25 H 1.48499 * 109.47129 * 210.00112 * 23 21 19
26 26 H 1.48499 * 109.47236 * 330.00274 * 23 21 19
27 27 C 1.53405 * 108.29572 * 48.19115 * 10 9 7
28 28 O 1.35952 * 118.43454 * 179.74842 * 6 5 4
29 29 H 1.08998 * 109.46873 * 60.00124 * 1 2 3
30 30 H 1.09005 * 109.46591 * 180.02562 * 1 2 3
31 31 H 1.09002 * 109.46939 * 299.99693 * 1 2 3
32 32 H 1.08000 * 120.05557 * 0.08052 * 4 3 2
33 33 H 1.08008 * 119.85385 * 179.97438 * 5 4 3
34 34 H 1.07991 * 119.86408 * 179.83655 * 8 7 6
35 35 H 1.09000 * 109.43911 * 222.22470 * 9 7 6
36 36 H 1.08998 * 109.43330 * 102.35703 * 9 7 6
37 37 H 1.08999 * 109.46624 * 90.00503 * 15 14 12
38 38 H 1.08998 * 109.47597 * 209.99882 * 15 14 12
39 39 H 1.09004 * 109.47369 * 330.01044 * 15 14 12
40 40 H 1.08995 * 109.47743 * 179.97438 * 18 16 14
41 41 H 1.08999 * 109.47172 * 300.00853 * 18 16 14
42 42 H 1.09003 * 109.46565 * 60.00097 * 18 16 14
43 43 H 0.96996 * 119.99803 * 179.97438 * 22 21 19
44 44 H 1.09002 * 109.68965 * 54.96911 * 27 10 9
45 45 H 1.09008 * 109.68833 * 175.53091 * 27 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4291 0.0000 0.0000
3 6 2.0464 1.2117 0.0000
4 6 1.2922 2.3759 -0.0005
5 6 1.9220 3.6031 -0.0026
6 6 3.3112 3.6790 -0.0036
7 6 4.0629 2.5176 0.0004
8 6 3.4297 1.2858 0.0012
9 6 5.5702 2.5570 0.0046
10 6 6.0512 3.9421 -0.4348
11 1 5.8680 4.0735 -1.5012
12 6 7.5248 4.0816 -0.1516
13 8 8.1370 3.1594 0.3439
14 7 8.1622 5.2313 -0.4489
15 6 7.4228 6.3451 -1.0478
16 6 9.5948 5.3666 -0.1741
17 1 9.9690 4.4431 0.2675
18 6 9.8202 6.5249 0.7998
19 6 10.3293 5.6423 -1.4609
20 1 9.7836 5.7094 -2.3904
21 6 11.6980 5.8087 -1.4514
22 7 12.3626 5.7264 -0.3195
23 14 12.6083 6.1510 -3.0462
24 1 12.6809 7.6173 -3.2699
25 1 13.9825 5.5947 -2.9611
26 1 11.8851 5.5133 -4.1757
27 6 5.2693 4.9973 0.3581
28 8 3.8924 4.9081 -0.0108
29 1 -0.3633 0.5138 -0.8900
30 1 -0.3633 -1.0277 0.0005
31 1 -0.3633 0.5138 0.8900
32 1 0.2135 2.3216 0.0004
33 1 1.3341 4.5092 -0.0034
34 1 4.0167 0.3794 0.0017
35 1 5.9547 1.8044 -0.6839
36 1 5.9357 2.3483 1.0100
37 1 7.0247 6.9830 -0.2587
38 1 8.0922 6.9266 -1.6818
39 1 6.6012 5.9547 -1.6485
40 1 10.8860 6.6254 1.0047
41 1 9.4459 7.4487 0.3586
42 1 9.2889 6.3255 1.7305
43 1 13.3255 5.8431 -0.3129
44 1 5.3765 4.8081 1.4262
45 1 5.6492 5.9911 0.1208
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000103442597.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:52:52
Heat of formation + Delta-G solvation = -80.353766 kcal
Electronic energy + Delta-G solvation = -27036.634912 eV
Core-core repulsion = 23213.086218 eV
Total energy + Delta-G solvation = -3823.548694 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.162 amu
Computer time = 0.54 seconds
Orbital eigenvalues (eV)
-41.05453 -39.72141 -38.75353 -36.50905 -35.52452 -34.12612 -32.89772 -30.97370
-30.10809 -29.11391 -27.41642 -26.37626 -25.63674 -25.24463 -24.10186 -22.76718
-21.40124 -20.05846 -18.43250 -17.98172 -17.80481 -16.88413 -16.75964 -16.23416
-15.93436 -15.50449 -15.26935 -14.87018 -14.59902 -14.30247 -14.01233 -13.78069
-13.48515 -13.33469 -13.17377 -13.03925 -12.74566 -12.53060 -12.29790 -12.12752
-11.89057 -11.63993 -11.50050 -11.15422 -11.07241 -10.99224 -10.83819 -10.73185
-10.51259 -10.41360 -10.29379 -10.20097 -9.23898 -9.03131 -8.93857 -8.46429
-7.82800 -7.68226 -6.10904 -4.19147 1.10067 1.33478 3.04291 3.16409
3.24280 3.29309 3.32035 3.35026 3.58349 3.83417 4.36202 4.55046
4.60359 4.63203 4.77418 4.82728 4.87207 4.93471 4.98003 5.17428
5.18052 5.20349 5.27605 5.46555 5.50424 5.57276 5.69957 5.76008
5.83458 5.89214 5.98065 6.10841 6.17758 6.32195 6.35266 6.42047
6.70871 6.78035 7.01115 7.13507 7.33754 7.41063 7.48147 7.67208
7.96715 8.14882 8.43929 8.77051 8.95189 9.47393 10.94402
Molecular weight = 319.16amu
Principal moments of inertia in cm(-1)
A = 0.028492 B = 0.002681 C = 0.002607
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 982.497503 B =10442.677384 C =10735.838980
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.029 3.971
2 O -0.319 6.319
3 C 0.093 3.907
4 C -0.179 4.179
5 C -0.109 4.109
6 C 0.095 3.905
7 C -0.110 4.110
8 C -0.116 4.116
9 C -0.060 4.060
10 C -0.146 4.146
11 H 0.107 0.893
12 C 0.512 3.488
13 O -0.545 6.545
14 N -0.590 5.590
15 C 0.075 3.925
16 C 0.257 3.743
17 H 0.064 0.936
18 C -0.146 4.146
19 C -0.527 4.527
20 H 0.060 0.940
21 C 0.065 3.935
22 N -0.887 5.887
23 Si 0.899 3.101
24 H -0.280 1.280
25 H -0.285 1.285
26 H -0.274 1.274
27 C 0.062 3.938
28 O -0.311 6.311
29 H 0.054 0.946
30 H 0.097 0.903
31 H 0.053 0.947
32 H 0.132 0.868
33 H 0.133 0.867
34 H 0.134 0.866
35 H 0.091 0.909
36 H 0.094 0.906
37 H 0.047 0.953
38 H 0.084 0.916
39 H 0.058 0.942
40 H 0.094 0.906
41 H 0.030 0.970
42 H 0.011 0.989
43 H 0.264 0.736
44 H 0.068 0.932
45 H 0.124 0.876
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -22.735 -3.829 0.796 23.068
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.067 4.067
2 O -0.233 6.233
3 C 0.049 3.951
4 C -0.197 4.197
5 C -0.128 4.128
6 C 0.050 3.950
7 C -0.111 4.111
8 C -0.134 4.134
9 C -0.098 4.098
10 C -0.168 4.168
11 H 0.125 0.875
12 C 0.298 3.702
13 O -0.424 6.424
14 N -0.321 5.321
15 C -0.068 4.068
16 C 0.157 3.843
17 H 0.082 0.918
18 C -0.205 4.205
19 C -0.566 4.566
20 H 0.078 0.922
21 C -0.138 4.138
22 N -0.525 5.525
23 Si 0.727 3.273
24 H -0.206 1.206
25 H -0.211 1.211
26 H -0.199 1.199
27 C -0.013 4.013
28 O -0.225 6.225
29 H 0.072 0.928
30 H 0.116 0.884
31 H 0.072 0.928
32 H 0.149 0.851
33 H 0.151 0.849
34 H 0.152 0.848
35 H 0.109 0.891
36 H 0.112 0.888
37 H 0.066 0.934
38 H 0.103 0.897
39 H 0.076 0.924
40 H 0.112 0.888
41 H 0.049 0.951
42 H 0.030 0.970
43 H 0.074 0.926
44 H 0.087 0.913
45 H 0.142 0.858
Dipole moment (debyes) X Y Z Total
from point charges -22.180 -4.290 1.086 22.617
hybrid contribution 0.428 0.319 -0.926 1.069
sum -21.753 -3.971 0.159 22.113
Atomic orbital electron populations
1.23018 0.78708 1.03749 1.01195 1.86079 1.21062 1.26794 1.89363
1.18791 0.92129 0.84166 1.00027 1.20962 0.99839 0.91496 1.07428
1.20333 0.91494 0.97928 1.03051 1.18629 0.91785 0.84190 1.00377
1.19746 0.96129 0.91854 1.03357 1.20136 0.91291 0.97674 1.04336
1.20333 0.88872 0.96298 1.04263 1.21984 0.94708 0.97279 1.02801
0.87510 1.19942 0.87727 0.83206 0.79329 1.90662 1.67820 1.39043
1.44831 1.48262 1.12098 1.12460 1.59266 1.21801 0.96736 0.90556
0.97739 1.18976 0.73302 0.96840 0.95166 0.91828 1.22087 1.04050
0.98127 0.96221 1.21304 0.92194 1.49815 0.93266 0.92214 1.24898
0.97380 0.94968 0.96533 1.69877 1.08117 1.49286 1.25204 0.86484
0.79111 0.78343 0.83398 1.20592 1.21086 1.19934 1.23293 0.78215
1.00963 0.98842 1.86033 1.26277 1.26060 1.84180 0.92780 0.88418
0.92799 0.85058 0.84948 0.84779 0.89104 0.88810 0.93441 0.89697
0.92375 0.88780 0.95101 0.97006 0.92639 0.91326 0.85828
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.18 9.81 101.05 0.99 1.17 16
2 O -0.32 -3.43 10.50 -19.69 -0.21 -3.64 16
3 C 0.09 1.09 6.68 -39.30 -0.26 0.83 16
4 C -0.18 -1.82 9.03 -39.51 -0.36 -2.18 16
5 C -0.11 -1.22 9.93 -39.36 -0.39 -1.61 16
6 C 0.10 1.25 6.47 -39.21 -0.25 1.00 16
7 C -0.11 -1.47 5.75 -104.44 -0.60 -2.07 16
8 C -0.12 -1.45 9.60 -39.37 -0.38 -1.83 16
9 C -0.06 -0.87 4.66 -27.81 -0.13 -1.00 16
10 C -0.15 -2.20 1.92 -91.53 -0.18 -2.37 16
11 H 0.11 1.52 7.41 -51.93 -0.38 1.14 16
12 C 0.51 10.14 7.08 -10.98 -0.08 10.06 16
13 O -0.55 -12.93 15.12 5.56 0.08 -12.85 16
14 N -0.59 -12.03 2.75 -175.26 -0.48 -12.51 16
15 C 0.08 1.19 7.82 59.85 0.47 1.66 16
16 C 0.26 6.39 2.64 -69.08 -0.18 6.21 16
17 H 0.06 1.85 6.90 -51.93 -0.36 1.49 16
18 C -0.15 -3.41 8.97 37.16 0.33 -3.07 16
19 C -0.53 -13.94 7.99 -34.44 -0.28 -14.22 16
20 H 0.06 1.55 7.33 -52.49 -0.38 1.17 16
21 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16
22 N -0.89 -24.77 11.32 55.43 0.63 -24.14 16
23 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16
24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16
25 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16
26 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16
27 C 0.06 0.82 5.97 37.37 0.22 1.04 16
28 O -0.31 -4.17 10.27 -19.59 -0.20 -4.37 16
29 H 0.05 0.29 7.66 -51.93 -0.40 -0.10 16
30 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16
31 H 0.05 0.29 7.66 -51.93 -0.40 -0.11 16
32 H 0.13 0.97 6.31 -52.49 -0.33 0.64 16
33 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16
34 H 0.13 1.56 8.06 -52.49 -0.42 1.13 16
35 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16
36 H 0.09 1.44 7.70 -51.93 -0.40 1.04 16
37 H 0.05 0.65 6.89 -51.93 -0.36 0.29 16
38 H 0.08 1.44 7.02 -51.93 -0.36 1.08 16
39 H 0.06 0.77 6.08 -51.93 -0.32 0.45 16
40 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16
41 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16
42 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16
43 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16
44 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16
45 H 0.12 1.49 4.59 -51.92 -0.24 1.26 16
LS Contribution 356.74 15.07 5.38 5.38
Total: -1.00 -31.36 356.74 -7.30 -38.66
By element:
Atomic # 1 Polarization: 8.75 SS G_CDS: -6.32 Total: 2.43 kcal
Atomic # 6 Polarization: -3.57 SS G_CDS: -1.16 Total: -4.73 kcal
Atomic # 7 Polarization: -36.80 SS G_CDS: 0.14 Total: -36.65 kcal
Atomic # 8 Polarization: -20.53 SS G_CDS: -0.32 Total: -20.86 kcal
Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal
Total LS contribution 5.38 Total: 5.38 kcal
Total: -31.36 -7.30 -38.66 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000103442597.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -41.695 kcal
(2) G-P(sol) polarization free energy of solvation -31.358 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.053 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.301 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.658 kcal
(6) G-S(sol) free energy of system = (1) + (5) -80.354 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.54 seconds