Wall clock time and date at job start Tue Mar 31 2020 12:52:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42905 * 1
3 3 C 1.35985 * 116.99800 * 2 1
4 4 C 1.38717 * 120.06624 * 359.97438 * 3 2 1
5 5 C 1.37946 * 119.89546 * 180.09822 * 4 3 2
6 6 C 1.39123 * 120.29608 * 359.97438 * 5 4 3
7 7 C 1.38351 * 119.78494 * 359.85919 * 6 5 4
8 8 C 1.38505 * 119.88096 * 0.20174 * 7 6 5
9 9 C 1.50780 * 121.41504 * 180.22379 * 7 6 5
10 10 C 1.53067 * 109.69357 * 342.29206 * 9 7 6
11 11 H 1.09002 * 109.69733 * 288.48862 * 10 9 7
12 12 C 1.50702 * 109.69739 * 167.93167 * 10 9 7
13 13 O 1.21278 * 120.00382 * 0.55624 * 12 10 9
14 14 N 1.34777 * 119.99599 * 180.56280 * 12 10 9
15 15 C 1.46500 * 120.00314 * 359.97438 * 14 12 10
16 16 C 1.46500 * 119.99749 * 180.02562 * 14 12 10
17 17 H 1.08993 * 109.47332 * 359.97438 * 16 14 12
18 18 C 1.53001 * 109.47354 * 239.99306 * 16 14 12
19 19 C 1.50703 * 109.47080 * 119.99486 * 16 14 12
20 20 H 1.07999 * 120.00263 * 359.97438 * 19 16 14
21 21 C 1.37884 * 119.99926 * 179.97438 * 19 16 14
22 22 N 1.31518 * 119.99815 * 0.02562 * 21 19 16
23 23 Si 1.86794 * 120.00000 * 180.02562 * 21 19 16
24 24 H 1.48496 * 109.47220 * 90.00172 * 23 21 19
25 25 H 1.48499 * 109.47129 * 210.00112 * 23 21 19
26 26 H 1.48499 * 109.47236 * 330.00274 * 23 21 19
27 27 C 1.53405 * 108.29572 * 48.19115 * 10 9 7
28 28 O 1.35952 * 118.43454 * 179.74842 * 6 5 4
29 29 H 1.08998 * 109.46873 * 60.00124 * 1 2 3
30 30 H 1.09005 * 109.46591 * 180.02562 * 1 2 3
31 31 H 1.09002 * 109.46939 * 299.99693 * 1 2 3
32 32 H 1.08000 * 120.05557 * 0.08052 * 4 3 2
33 33 H 1.08008 * 119.85385 * 179.97438 * 5 4 3
34 34 H 1.07991 * 119.86408 * 179.83655 * 8 7 6
35 35 H 1.09000 * 109.43911 * 222.22470 * 9 7 6
36 36 H 1.08998 * 109.43330 * 102.35703 * 9 7 6
37 37 H 1.08999 * 109.46624 * 90.00503 * 15 14 12
38 38 H 1.08998 * 109.47597 * 209.99882 * 15 14 12
39 39 H 1.09004 * 109.47369 * 330.01044 * 15 14 12
40 40 H 1.08995 * 109.47743 * 179.97438 * 18 16 14
41 41 H 1.08999 * 109.47172 * 300.00853 * 18 16 14
42 42 H 1.09003 * 109.46565 * 60.00097 * 18 16 14
43 43 H 0.96996 * 119.99803 * 179.97438 * 22 21 19
44 44 H 1.09002 * 109.68965 * 54.96911 * 27 10 9
45 45 H 1.09008 * 109.68833 * 175.53091 * 27 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4291 0.0000 0.0000
3 6 2.0464 1.2117 0.0000
4 6 1.2922 2.3759 -0.0005
5 6 1.9220 3.6031 -0.0026
6 6 3.3112 3.6790 -0.0036
7 6 4.0629 2.5176 0.0004
8 6 3.4297 1.2858 0.0012
9 6 5.5702 2.5570 0.0046
10 6 6.0512 3.9421 -0.4348
11 1 5.8680 4.0735 -1.5012
12 6 7.5248 4.0816 -0.1516
13 8 8.1370 3.1594 0.3439
14 7 8.1622 5.2313 -0.4489
15 6 7.4228 6.3451 -1.0478
16 6 9.5948 5.3666 -0.1741
17 1 9.9690 4.4431 0.2675
18 6 9.8202 6.5249 0.7998
19 6 10.3293 5.6423 -1.4609
20 1 9.7836 5.7094 -2.3904
21 6 11.6980 5.8087 -1.4514
22 7 12.3626 5.7264 -0.3195
23 14 12.6083 6.1510 -3.0462
24 1 12.6809 7.6173 -3.2699
25 1 13.9825 5.5947 -2.9611
26 1 11.8851 5.5133 -4.1757
27 6 5.2693 4.9973 0.3581
28 8 3.8924 4.9081 -0.0108
29 1 -0.3633 0.5138 -0.8900
30 1 -0.3633 -1.0277 0.0005
31 1 -0.3633 0.5138 0.8900
32 1 0.2135 2.3216 0.0004
33 1 1.3341 4.5092 -0.0034
34 1 4.0167 0.3794 0.0017
35 1 5.9547 1.8044 -0.6839
36 1 5.9357 2.3483 1.0100
37 1 7.0247 6.9830 -0.2587
38 1 8.0922 6.9266 -1.6818
39 1 6.6012 5.9547 -1.6485
40 1 10.8860 6.6254 1.0047
41 1 9.4459 7.4487 0.3586
42 1 9.2889 6.3255 1.7305
43 1 13.3255 5.8431 -0.3129
44 1 5.3765 4.8081 1.4262
45 1 5.6492 5.9911 0.1208
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000103442597.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:52:52
Heat of formation + Delta-G solvation = -99.546197 kcal
Electronic energy + Delta-G solvation = -27037.467158 eV
Core-core repulsion = 23213.086218 eV
Total energy + Delta-G solvation = -3824.380940 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.162 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-42.11918 -40.86406 -39.93100 -37.43331 -37.23210 -35.40326 -34.68105 -32.23504
-31.08824 -30.62924 -28.09348 -27.73446 -27.30572 -26.67967 -25.32294 -23.67833
-22.92089 -21.26493 -19.94354 -18.91784 -18.77169 -18.50516 -17.96172 -17.73474
-17.12636 -16.63058 -16.46863 -16.20503 -15.88668 -15.43649 -15.35724 -14.96890
-14.65455 -14.40767 -14.35707 -14.20662 -14.05957 -13.73120 -13.67442 -13.54722
-13.02858 -12.93053 -12.81812 -12.72269 -12.67746 -12.55554 -12.20922 -12.15116
-12.09595 -11.89361 -11.57421 -11.30406 -11.19161 -10.69499 -10.48806 -9.87875
-9.37482 -8.73121 -8.15132 -6.31387 0.20738 0.42450 1.41143 1.42996
1.52371 1.65508 2.10908 2.32925 2.42358 2.47539 2.69518 3.13153
3.38611 3.51163 3.63672 3.78890 3.86335 3.97711 4.09856 4.26806
4.36709 4.42249 4.44786 4.45885 4.46018 4.64441 4.69469 4.75923
4.77434 4.82557 4.90444 4.91224 4.92408 5.02016 5.05165 5.08605
5.30703 5.38669 5.47992 5.54435 5.57619 5.66452 6.02696 6.16044
6.29022 6.52275 6.75833 6.76241 7.26609 7.43555 8.89192
Molecular weight = 319.16amu
Principal moments of inertia in cm(-1)
A = 0.028492 B = 0.002681 C = 0.002607
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 982.497503 B =10442.677384 C =10735.838980
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.017 3.983
2 O -0.338 6.338
3 C 0.091 3.909
4 C -0.169 4.169
5 C -0.105 4.105
6 C 0.074 3.926
7 C -0.120 4.120
8 C -0.133 4.133
9 C -0.056 4.056
10 C -0.131 4.131
11 H 0.121 0.879
12 C 0.506 3.494
13 O -0.595 6.595
14 N -0.595 5.595
15 C 0.069 3.931
16 C 0.261 3.739
17 H 0.009 0.991
18 C -0.132 4.132
19 C -0.538 4.538
20 H 0.062 0.938
21 C 0.015 3.985
22 N -0.917 5.917
23 Si 0.964 3.036
24 H -0.267 1.267
25 H -0.287 1.287
26 H -0.272 1.272
27 C 0.069 3.931
28 O -0.309 6.309
29 H 0.067 0.933
30 H 0.115 0.885
31 H 0.067 0.933
32 H 0.165 0.835
33 H 0.156 0.844
34 H 0.131 0.869
35 H 0.083 0.917
36 H 0.076 0.924
37 H 0.077 0.923
38 H 0.074 0.926
39 H 0.088 0.912
40 H 0.066 0.934
41 H 0.049 0.951
42 H 0.021 0.979
43 H 0.264 0.736
44 H 0.065 0.935
45 H 0.141 0.859
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -25.879 -2.623 -0.407 26.015
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.077 4.077
2 O -0.252 6.252
3 C 0.046 3.954
4 C -0.187 4.187
5 C -0.124 4.124
6 C 0.030 3.970
7 C -0.121 4.121
8 C -0.152 4.152
9 C -0.094 4.094
10 C -0.153 4.153
11 H 0.139 0.861
12 C 0.294 3.706
13 O -0.477 6.477
14 N -0.325 5.325
15 C -0.072 4.072
16 C 0.159 3.841
17 H 0.027 0.973
18 C -0.191 4.191
19 C -0.576 4.576
20 H 0.080 0.920
21 C -0.185 4.185
22 N -0.556 5.556
23 Si 0.789 3.211
24 H -0.192 1.192
25 H -0.213 1.213
26 H -0.196 1.196
27 C -0.006 4.006
28 O -0.223 6.223
29 H 0.086 0.914
30 H 0.134 0.866
31 H 0.085 0.915
32 H 0.182 0.818
33 H 0.174 0.826
34 H 0.149 0.851
35 H 0.101 0.899
36 H 0.094 0.906
37 H 0.095 0.905
38 H 0.093 0.907
39 H 0.107 0.893
40 H 0.085 0.915
41 H 0.068 0.932
42 H 0.040 0.960
43 H 0.073 0.927
44 H 0.083 0.917
45 H 0.158 0.842
Dipole moment (debyes) X Y Z Total
from point charges -25.375 -3.060 -0.131 25.559
hybrid contribution 1.289 -0.171 -0.521 1.400
sum -24.086 -3.230 -0.652 24.310
Atomic orbital electron populations
1.23356 0.76367 1.05527 1.02438 1.86065 1.23530 1.26506 1.89149
1.18914 0.91912 0.85187 0.99374 1.21314 1.01417 0.90447 1.05548
1.20655 0.90728 0.99251 1.01752 1.18880 0.92732 0.83800 1.01627
1.19592 0.95017 0.92611 1.04852 1.20213 0.92324 0.97404 1.05265
1.20213 0.90242 0.95878 1.03047 1.21879 0.91038 0.98445 1.03915
0.86089 1.20726 0.89544 0.82166 0.78116 1.90634 1.69397 1.40700
1.46966 1.48232 1.10756 1.14056 1.59472 1.22089 0.96880 0.89452
0.98812 1.18569 0.76003 0.94763 0.94788 0.97274 1.21869 1.02469
0.98281 0.96447 1.21573 0.92708 1.49530 0.93835 0.91998 1.25729
0.98303 0.94833 0.99625 1.70023 1.08287 1.50073 1.27184 0.85462
0.77444 0.78717 0.79427 1.19194 1.21308 1.19637 1.23250 0.78262
1.00806 0.98292 1.86035 1.25718 1.26180 1.84390 0.91441 0.86630
0.91485 0.81769 0.82628 0.85064 0.89894 0.90580 0.90513 0.90719
0.89327 0.91484 0.93204 0.95958 0.92662 0.91672 0.84187
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.17 9.81 113.37 1.11 1.28 16
2 O -0.34 -6.66 10.50 -93.39 -0.98 -7.64 16
3 C 0.09 1.96 6.68 22.45 0.15 2.11 16
4 C -0.17 -2.90 9.03 22.32 0.20 -2.70 16
5 C -0.11 -2.03 9.93 22.41 0.22 -1.81 16
6 C 0.07 1.81 6.47 22.51 0.15 1.96 16
7 C -0.12 -3.15 5.75 -19.75 -0.11 -3.27 16
8 C -0.13 -3.32 9.60 22.40 0.22 -3.10 16
9 C -0.06 -1.68 4.66 29.90 0.14 -1.54 16
10 C -0.13 -3.89 1.92 -11.38 -0.02 -3.92 16
11 H 0.12 3.26 7.41 -2.39 -0.02 3.24 16
12 C 0.51 20.51 7.08 87.66 0.62 21.13 16
13 O -0.60 -29.89 15.12 -3.02 -0.05 -29.94 16
14 N -0.60 -24.32 2.75 -826.80 -2.28 -26.60 16
15 C 0.07 2.05 7.82 127.77 1.00 3.05 16
16 C 0.26 13.35 2.64 44.25 0.12 13.47 16
17 H 0.01 0.57 6.90 -2.39 -0.02 0.56 16
18 C -0.13 -6.23 8.97 71.98 0.65 -5.58 16
19 C -0.54 -28.84 7.99 25.60 0.20 -28.64 16
20 H 0.06 3.21 7.33 -2.91 -0.02 3.19 16
21 C 0.01 0.80 5.30 84.66 0.45 1.25 16
22 N -0.92 -52.58 11.32 21.45 0.24 -52.34 16
23 Si 0.96 42.81 29.54 68.60 2.03 44.83 16
24 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16
25 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16
26 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16
27 C 0.07 1.71 5.97 72.12 0.43 2.14 16
28 O -0.31 -7.52 10.27 -93.01 -0.96 -8.48 16
29 H 0.07 0.49 7.66 -2.39 -0.02 0.47 16
30 H 0.12 0.70 8.14 -2.38 -0.02 0.69 16
31 H 0.07 0.49 7.66 -2.39 -0.02 0.47 16
32 H 0.16 1.67 6.31 -2.91 -0.02 1.65 16
33 H 0.16 2.24 8.06 -2.91 -0.02 2.22 16
34 H 0.13 3.18 8.06 -2.92 -0.02 3.16 16
35 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16
36 H 0.08 2.49 7.70 -2.39 -0.02 2.47 16
37 H 0.08 1.84 6.89 -2.39 -0.02 1.82 16
38 H 0.07 2.40 7.02 -2.39 -0.02 2.38 16
39 H 0.09 2.08 6.08 -2.38 -0.01 2.06 16
40 H 0.07 3.54 6.07 -2.39 -0.01 3.53 16
41 H 0.05 2.10 7.67 -2.39 -0.02 2.08 16
42 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16
43 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16
44 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16
45 H 0.14 2.97 4.59 -2.38 -0.01 2.96 16
Total: -1.00 -70.90 356.74 4.53 -66.37
By element:
Atomic # 1 Polarization: 16.95 SS G_CDS: 1.01 Total: 17.95 kcal
Atomic # 6 Polarization: -9.67 SS G_CDS: 5.52 Total: -4.15 kcal
Atomic # 7 Polarization: -76.91 SS G_CDS: -2.03 Total: -78.94 kcal
Atomic # 8 Polarization: -44.08 SS G_CDS: -1.98 Total: -46.06 kcal
Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.83 kcal
Total: -70.90 4.53 -66.37 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000103442597.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -33.177 kcal
(2) G-P(sol) polarization free energy of solvation -70.904 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.081 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.535 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.369 kcal
(6) G-S(sol) free energy of system = (1) + (5) -99.546 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds