Wall clock time and date at job start Tue Mar 31 2020 12:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.55016 * 2 1 4 4 C 1.53296 * 109.51104 * 120.12547 * 2 1 3 5 5 N 1.47154 * 108.41287 * 172.24862 * 4 2 1 6 6 C 1.34777 * 120.98405 * 129.42742 * 5 4 2 7 7 O 1.21273 * 120.00114 * 180.02562 * 6 5 4 8 8 C 1.50703 * 119.99582 * 359.97438 * 6 5 4 9 9 C 1.50700 * 109.46885 * 180.02562 * 8 6 5 10 10 C 1.38302 * 119.92934 * 269.72678 * 9 8 6 11 11 C 1.38108 * 120.06773 * 179.72639 * 10 9 8 12 12 C 1.38873 * 119.92628 * 0.54551 * 11 10 9 13 13 O 1.35757 * 120.06848 * 179.74618 * 12 11 10 14 14 C 1.34827 * 116.99977 * 174.44266 * 13 12 11 15 15 H 1.08000 * 120.00426 * 5.06239 * 14 13 12 16 16 C 1.38662 * 119.99452 * 185.05756 * 14 13 12 17 17 N 1.31552 * 120.00235 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99637 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47221 * 90.00190 * 18 16 14 20 20 H 1.48501 * 109.47114 * 210.00128 * 18 16 14 21 21 H 1.48498 * 109.47304 * 330.00201 * 18 16 14 22 22 C 1.38882 * 119.86664 * 359.73226 * 12 11 10 23 23 C 1.38094 * 119.93059 * 359.97438 * 22 12 11 24 24 C 1.47149 * 118.03567 * 309.44938 * 5 4 2 25 25 H 1.09000 * 109.68213 * 170.30134 * 24 5 4 26 26 C 1.53004 * 109.68089 * 290.80901 * 24 5 4 27 27 C 1.53294 * 108.39102 * 50.53250 * 24 5 4 28 28 O 1.42956 * 109.22122 * 307.70395 * 27 24 5 29 29 H 1.08996 * 109.47627 * 299.87563 * 1 2 3 30 30 H 1.09003 * 109.46947 * 59.87532 * 1 2 3 31 31 H 1.08998 * 109.47103 * 179.86613 * 1 2 3 32 32 H 1.08996 * 109.67908 * 52.50801 * 4 2 1 33 33 H 1.08997 * 109.68244 * 291.98407 * 4 2 1 34 34 H 1.09000 * 109.47071 * 300.00015 * 8 6 5 35 35 H 1.08994 * 109.46956 * 60.00095 * 8 6 5 36 36 H 1.07994 * 119.96788 * 0.02562 * 10 9 8 37 37 H 1.07998 * 120.03166 * 180.27371 * 11 10 9 38 38 H 0.97001 * 119.99751 * 179.97438 * 17 16 14 39 39 H 1.07997 * 120.03418 * 180.02562 * 22 12 11 40 40 H 1.07998 * 119.97196 * 179.97438 * 23 22 12 41 41 H 1.09001 * 109.46801 * 60.00190 * 26 24 5 42 42 H 1.09000 * 109.47454 * 180.02562 * 26 24 5 43 43 H 1.09002 * 109.47186 * 300.00572 * 26 24 5 44 44 H 1.09008 * 109.50530 * 67.62142 * 27 24 5 45 45 H 1.08992 * 109.51445 * 187.72166 * 27 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8947 1.0272 0.0000 4 6 2.0420 -0.7252 1.2498 5 7 3.5012 -0.8761 1.1345 6 6 4.3188 -0.5030 2.1390 7 8 5.5189 -0.6348 2.0248 8 6 3.7415 0.0792 3.4035 9 6 4.8585 0.4111 4.3591 10 6 5.2897 -0.5344 5.2717 11 6 6.3169 -0.2351 6.1451 12 6 6.9093 1.0205 6.1137 13 8 7.9158 1.3195 6.9743 14 6 8.5234 2.5124 6.8149 15 1 8.1512 3.2147 6.0836 16 6 9.6262 2.8378 7.5899 17 7 10.0799 1.9823 8.4804 18 14 10.4676 4.4909 7.3695 19 1 9.8463 5.4877 8.2781 20 1 11.9110 4.3587 7.6927 21 1 10.3146 4.9406 5.9626 22 6 6.4701 1.9698 5.2000 23 6 5.4467 1.6624 4.3253 24 6 4.0415 -1.4459 -0.1099 25 1 5.1261 -1.3383 -0.1224 26 6 3.6697 -2.9272 -0.2024 27 6 3.4328 -0.6860 -1.2940 28 8 2.0090 -0.6769 -1.1655 29 1 -0.3634 0.5119 0.8910 30 1 -0.3633 0.5158 -0.8889 31 1 -0.3633 -1.0276 -0.0024 32 1 1.5758 -1.7079 1.3208 33 1 1.8024 -0.1402 2.1377 34 1 3.1860 0.9862 3.1654 35 1 3.0718 -0.6465 3.8648 36 1 4.8260 -1.5093 5.2983 37 1 6.6561 -0.9754 6.8545 38 1 10.8516 2.2098 9.0222 39 1 6.9291 2.9470 5.1730 40 1 5.1044 2.4002 3.6148 41 1 2.5846 -3.0303 -0.1989 42 1 4.0719 -3.3459 -1.1249 43 1 4.0882 -3.4607 0.6511 44 1 3.8045 0.3387 -1.2987 45 1 3.7120 -1.1788 -2.2252 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110204686.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:58 Heat of formation + Delta-G solvation = -104.010960 kcal Electronic energy + Delta-G solvation = -26613.246580 eV Core-core repulsion = 22788.672033 eV Total energy + Delta-G solvation = -3824.574547 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.63220 -40.73652 -39.54470 -38.16569 -35.95235 -34.71749 -34.34021 -32.83691 -31.80032 -31.28220 -28.25592 -27.33648 -27.30938 -26.92531 -23.65800 -23.63463 -22.62092 -21.60193 -19.90327 -19.77716 -18.84354 -18.39329 -17.72566 -16.96980 -16.70447 -16.41810 -16.31837 -16.04159 -15.97090 -15.52522 -15.44881 -15.16278 -14.90402 -14.45421 -14.37516 -14.23374 -13.92178 -13.60356 -13.27505 -13.16195 -13.08252 -12.98487 -12.84470 -12.66825 -12.55325 -12.43909 -12.31208 -12.21355 -12.12839 -12.07930 -11.51168 -11.19274 -11.11470 -10.86687 -10.69657 -9.78060 -9.56053 -8.91479 -8.48269 -6.16504 0.59861 0.64916 1.33153 1.42714 1.51256 1.63521 1.88244 2.16901 2.75454 2.81532 3.13512 3.50826 3.61074 3.70985 3.81539 3.93923 4.01484 4.03727 4.13516 4.17544 4.18568 4.34401 4.42386 4.49722 4.53255 4.59107 4.63235 4.67154 4.71300 4.78272 4.80958 4.91811 4.98708 5.06863 5.08196 5.13237 5.23438 5.28502 5.37201 5.48326 5.56183 5.70258 5.75628 6.01824 6.17277 6.19481 6.36721 6.96237 7.19251 7.77410 8.75252 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.024751 B = 0.002456 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.009843 B =11395.748231 C =11482.951003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.067 3.933 3 H 0.061 0.939 4 C 0.073 3.927 5 N -0.614 5.614 6 C 0.513 3.487 7 O -0.578 6.578 8 C -0.076 4.076 9 C -0.146 4.146 10 C -0.057 4.057 11 C -0.206 4.206 12 C 0.113 3.887 13 O -0.233 6.233 14 C -0.415 4.415 15 H 0.100 0.900 16 C -0.024 4.024 17 N -0.921 5.921 18 Si 1.020 2.980 19 H -0.260 1.260 20 H -0.270 1.270 21 H -0.255 1.255 22 C -0.243 4.243 23 C -0.060 4.060 24 C 0.095 3.905 25 H 0.081 0.919 26 C -0.146 4.146 27 C 0.061 3.939 28 O -0.385 6.385 29 H 0.095 0.905 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.089 0.911 33 H 0.120 0.880 34 H 0.128 0.872 35 H 0.130 0.870 36 H 0.145 0.855 37 H 0.112 0.888 38 H 0.273 0.727 39 H 0.118 0.882 40 H 0.137 0.863 41 H 0.070 0.930 42 H 0.080 0.920 43 H 0.043 0.957 44 H 0.049 0.951 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.873 -4.400 -19.633 30.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.009 3.991 3 H 0.079 0.921 4 C -0.049 4.049 5 N -0.348 5.348 6 C 0.303 3.697 7 O -0.457 6.457 8 C -0.115 4.115 9 C -0.147 4.147 10 C -0.075 4.075 11 C -0.225 4.225 12 C 0.063 3.937 13 O -0.140 6.140 14 C -0.491 4.491 15 H 0.117 0.883 16 C -0.221 4.221 17 N -0.560 5.560 18 Si 0.839 3.161 19 H -0.184 1.184 20 H -0.195 1.195 21 H -0.179 1.179 22 C -0.263 4.263 23 C -0.078 4.078 24 C -0.008 4.008 25 H 0.099 0.901 26 C -0.204 4.204 27 C -0.016 4.016 28 O -0.304 6.304 29 H 0.114 0.886 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.107 0.893 33 H 0.138 0.862 34 H 0.146 0.854 35 H 0.148 0.852 36 H 0.163 0.837 37 H 0.130 0.870 38 H 0.082 0.918 39 H 0.135 0.865 40 H 0.155 0.845 41 H 0.089 0.911 42 H 0.099 0.901 43 H 0.062 0.938 44 H 0.067 0.933 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -22.114 -4.704 -19.487 29.847 hybrid contribution 1.367 0.629 0.484 1.580 sum -20.747 -4.074 -19.003 28.428 Atomic orbital electron populations 1.21746 0.90354 1.03702 1.03889 1.22682 0.96861 0.95062 0.84469 0.92096 1.22773 0.78330 1.03168 1.00640 1.48383 1.07831 1.62730 1.15899 1.21267 0.86209 0.76957 0.85297 1.90738 1.17333 1.56069 1.81545 1.20567 0.96455 1.04219 0.90264 1.19228 1.01502 0.94253 0.99694 1.20857 0.94281 0.99108 0.93286 1.20435 1.02091 0.94728 1.05260 1.19927 0.89139 0.94672 0.89980 1.83938 1.43117 1.37751 1.49188 1.21823 1.12078 0.91868 1.23311 0.88269 1.26619 0.96363 1.04162 0.94974 1.70187 1.25108 1.37773 1.22911 0.84578 0.77236 0.74667 0.79646 1.18431 1.19515 1.17891 1.21221 1.03210 1.00411 1.01410 1.20910 0.93795 0.96896 0.96159 1.21911 0.99520 0.94918 0.84490 0.90061 1.21935 1.02653 0.93407 1.02391 1.22953 0.80973 0.99593 0.98094 1.87960 1.20749 1.77576 1.44121 0.88612 0.91673 0.91310 0.89316 0.86177 0.85382 0.85203 0.83706 0.86979 0.91810 0.86457 0.84490 0.91127 0.90065 0.93778 0.93271 0.85945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.90 9.57 71.98 0.69 -0.21 16 2 C 0.07 0.74 3.40 30.69 0.10 0.85 16 3 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 4 C 0.07 0.79 5.43 86.35 0.47 1.26 16 5 N -0.61 -11.53 2.71 -793.54 -2.15 -13.69 16 6 C 0.51 13.19 7.70 87.66 0.68 13.87 16 7 O -0.58 -21.61 15.50 -3.01 -0.05 -21.66 16 8 C -0.08 -1.56 4.20 29.10 0.12 -1.44 16 9 C -0.15 -4.71 4.38 -19.83 -0.09 -4.80 16 10 C -0.06 -2.05 9.69 22.25 0.22 -1.84 16 11 C -0.21 -9.38 9.99 22.39 0.22 -9.15 16 12 C 0.11 5.97 6.65 22.58 0.15 6.12 16 13 O -0.23 -14.69 9.76 -22.79 -0.22 -14.92 16 14 C -0.41 -25.15 9.49 67.92 0.64 -24.51 16 15 H 0.10 5.55 5.20 -2.91 -0.02 5.54 16 16 C -0.02 -1.41 5.49 84.84 0.47 -0.94 16 17 N -0.92 -58.20 13.67 21.61 0.30 -57.91 16 18 Si 1.02 44.23 29.55 68.60 2.03 46.25 16 19 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 20 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 21 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 22 C -0.24 -11.28 9.17 22.39 0.21 -11.08 16 23 C -0.06 -2.18 9.69 22.25 0.22 -1.97 16 24 C 0.10 1.78 3.23 44.97 0.15 1.92 16 25 H 0.08 1.97 7.08 -2.39 -0.02 1.95 16 26 C -0.15 -2.27 9.24 71.98 0.67 -1.61 16 27 C 0.06 0.91 6.36 72.08 0.46 1.37 16 28 O -0.39 -5.80 10.02 -148.98 -1.49 -7.29 16 29 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 30 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.09 0.82 7.67 -2.39 -0.02 0.80 16 33 H 0.12 0.73 6.05 -2.39 -0.01 0.72 16 34 H 0.13 1.80 7.60 -2.39 -0.02 1.78 16 35 H 0.13 1.81 7.95 -2.39 -0.02 1.79 16 36 H 0.15 4.07 8.06 -2.91 -0.02 4.05 16 37 H 0.11 5.04 8.06 -2.91 -0.02 5.02 16 38 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 39 H 0.12 5.51 5.64 -2.91 -0.02 5.50 16 40 H 0.14 4.04 8.06 -2.91 -0.02 4.02 16 41 H 0.07 0.99 7.23 -2.39 -0.02 0.97 16 42 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 45 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -83.39 368.26 4.76 -78.63 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: 0.99 Total: 22.72 kcal Atomic # 6 Polarization: -37.51 SS G_CDS: 5.36 Total: -32.15 kcal Atomic # 7 Polarization: -69.74 SS G_CDS: -1.86 Total: -71.60 kcal Atomic # 8 Polarization: -42.10 SS G_CDS: -1.76 Total: -43.86 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.25 kcal Total: -83.39 4.76 -78.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110204686.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.377 kcal (2) G-P(sol) polarization free energy of solvation -83.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds