Wall clock time and date at job start Tue Mar 31 2020 12:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34228 * 116.99742 * 2 1 4 4 O 1.20822 * 120.00167 * 0.02562 * 3 2 1 5 5 C 1.50707 * 119.99845 * 179.97438 * 3 2 1 6 6 N 1.46502 * 109.47044 * 179.97438 * 5 3 2 7 7 C 1.37092 * 120.00323 * 270.00158 * 6 5 3 8 8 H 1.07997 * 120.00747 * 141.41113 * 7 6 5 9 9 C 1.38956 * 120.00074 * 321.41519 * 7 6 5 10 10 N 1.31404 * 120.00419 * 159.44735 * 9 7 6 11 11 Si 1.86798 * 119.99726 * 339.44956 * 9 7 6 12 12 H 1.48501 * 109.47463 * 95.37422 * 11 9 7 13 13 H 1.48498 * 109.47460 * 215.37501 * 11 9 7 14 14 H 1.48504 * 109.47189 * 335.37523 * 11 9 7 15 15 C 1.34776 * 119.99763 * 90.00282 * 6 5 3 16 16 O 1.21291 * 120.00222 * 5.01502 * 15 6 5 17 17 C 1.50702 * 120.00149 * 185.01680 * 15 6 5 18 18 C 1.52993 * 109.47456 * 174.81404 * 17 15 6 19 19 C 1.53002 * 109.47198 * 184.44934 * 18 17 15 20 20 H 1.09010 * 109.46677 * 54.68797 * 19 18 17 21 21 C 1.52999 * 109.47451 * 294.68550 * 19 18 17 22 22 C 1.50706 * 109.47122 * 174.67964 * 19 18 17 23 23 C 1.38228 * 119.99434 * 59.73094 * 22 19 18 24 24 C 1.38244 * 119.99599 * 179.78611 * 23 22 19 25 25 C 1.38224 * 119.99797 * 0.44179 * 24 23 22 26 26 C 1.38235 * 120.00354 * 359.81205 * 25 24 23 27 27 C 1.38234 * 120.00079 * 359.97438 * 26 25 24 28 28 H 1.08997 * 109.47151 * 300.00131 * 1 2 3 29 29 H 1.09001 * 109.46849 * 60.00066 * 1 2 3 30 30 H 1.08998 * 109.46660 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47069 * 59.99970 * 5 3 2 32 32 H 1.08995 * 109.47352 * 300.00112 * 5 3 2 33 33 H 0.97000 * 120.00131 * 179.97438 * 10 9 7 34 34 H 1.09011 * 109.46960 * 54.80799 * 17 15 6 35 35 H 1.09000 * 109.46815 * 294.82061 * 17 15 6 36 36 H 1.08998 * 109.47074 * 64.45123 * 18 17 15 37 37 H 1.08998 * 109.46844 * 304.45147 * 18 17 15 38 38 H 1.08996 * 109.47273 * 179.14207 * 21 19 18 39 39 H 1.09001 * 109.46638 * 299.14271 * 21 19 18 40 40 H 1.08999 * 109.46821 * 59.13826 * 21 19 18 41 41 H 1.08003 * 120.00349 * 359.97438 * 23 22 19 42 42 H 1.08005 * 119.99589 * 180.27358 * 24 23 22 43 43 H 1.08007 * 120.00113 * 179.83521 * 25 24 23 44 44 H 1.08003 * 120.00525 * 180.02562 * 26 25 24 45 45 H 1.07999 * 120.00418 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9817 2.6798 -0.0002 7 6 4.1765 3.3365 -1.1877 8 1 3.8732 4.3678 -1.2907 9 6 4.7642 2.6750 -2.2591 10 7 4.5962 3.1259 -3.4819 11 14 5.7931 1.1446 -1.9612 12 1 4.9493 -0.0631 -2.1467 13 1 6.9225 1.1121 -2.9248 14 1 6.3256 1.1683 -0.5751 15 6 4.1723 3.3267 1.1667 16 8 4.0890 2.7231 2.2155 17 6 4.4888 4.8001 1.1685 18 6 4.5290 5.3115 2.6099 19 6 4.7402 6.8268 2.6078 20 1 3.9723 7.2998 1.9954 21 6 6.1210 7.1486 2.0328 22 6 4.6494 7.3487 4.0187 23 6 5.5240 6.8863 4.9841 24 6 5.4436 7.3682 6.2774 25 6 4.4828 8.3056 6.6071 26 6 3.6048 8.7641 5.6428 27 6 3.6880 8.2855 4.3486 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 3.9564 0.7806 -0.8891 32 1 3.9557 0.7810 0.8908 33 1 5.0068 2.6643 -4.2297 34 1 3.7199 5.3377 0.6135 35 1 5.4581 4.9640 0.6976 36 1 5.3493 4.8311 3.1431 37 1 3.5868 5.0766 3.1051 38 1 6.2654 8.2289 2.0172 39 1 6.8894 6.6883 2.6539 40 1 6.1920 6.7578 1.0178 41 1 6.2720 6.1508 4.7274 42 1 6.1298 7.0101 7.0306 43 1 4.4182 8.6802 7.6180 44 1 2.8543 9.4969 5.9003 45 1 3.0023 8.6440 3.5951 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121944390.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:41 Heat of formation + Delta-G solvation = -96.560443 kcal Electronic energy + Delta-G solvation = -26815.037479 eV Core-core repulsion = 22990.786011 eV Total energy + Delta-G solvation = -3824.251468 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.03394 -39.50731 -38.66850 -36.10053 -35.57321 -34.80498 -32.06243 -31.13634 -30.85812 -29.21334 -28.35293 -26.63291 -25.24002 -24.36059 -22.78573 -22.13257 -20.82027 -19.61465 -19.02857 -17.48169 -17.19456 -16.83635 -16.45235 -15.82239 -15.53287 -15.39172 -15.14440 -14.98111 -14.60937 -14.06029 -13.64534 -13.44920 -13.32700 -13.23662 -13.11172 -12.82523 -12.77751 -12.28281 -12.14019 -12.02987 -11.86089 -11.60979 -11.46147 -11.31450 -11.02483 -10.96236 -10.64918 -10.55892 -10.37802 -10.34060 -10.12548 -10.06756 -9.91073 -9.33482 -8.88392 -8.76158 -8.58935 -7.98917 -6.56367 -4.19138 1.41152 1.43683 2.84064 2.94966 3.00484 3.16375 3.19807 3.74519 3.82692 4.00552 4.25782 4.78249 4.84990 4.88157 5.00730 5.13594 5.24656 5.35996 5.39326 5.43838 5.44927 5.51709 5.58171 5.59107 5.67950 5.77430 5.80710 5.82623 5.94703 5.97147 6.03724 6.11975 6.20048 6.28155 6.30623 6.43952 6.52182 6.54633 6.63099 6.79386 6.81983 6.84487 7.05369 7.15147 7.95744 8.14872 8.38664 8.83237 9.19533 9.51868 10.54163 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.014264 B = 0.003425 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.553517 B = 8173.024011 C = 9264.236057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.370 6.370 3 C 0.449 3.551 4 O -0.489 6.489 5 C 0.107 3.893 6 N -0.453 5.453 7 C -0.341 4.341 8 H 0.108 0.892 9 C 0.066 3.934 10 N -0.854 5.854 11 Si 0.861 3.139 12 H -0.270 1.270 13 H -0.281 1.281 14 H -0.256 1.256 15 C 0.497 3.503 16 O -0.593 6.593 17 C -0.117 4.117 18 C -0.092 4.092 19 C -0.056 4.056 20 H 0.079 0.921 21 C -0.145 4.145 22 C -0.065 4.065 23 C -0.112 4.112 24 C -0.121 4.121 25 C -0.132 4.132 26 C -0.122 4.122 27 C -0.120 4.120 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.094 0.906 31 H 0.103 0.897 32 H 0.113 0.887 33 H 0.276 0.724 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.051 0.949 39 H 0.055 0.945 40 H 0.068 0.932 41 H 0.122 0.878 42 H 0.118 0.882 43 H 0.116 0.884 44 H 0.118 0.882 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.005 4.487 11.140 12.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.287 6.287 3 C 0.289 3.711 4 O -0.374 6.374 5 C -0.018 4.018 6 N -0.175 5.175 7 C -0.468 4.468 8 H 0.126 0.874 9 C -0.142 4.142 10 N -0.488 5.488 11 Si 0.688 3.312 12 H -0.197 1.197 13 H -0.207 1.207 14 H -0.179 1.179 15 C 0.288 3.712 16 O -0.477 6.477 17 C -0.156 4.156 18 C -0.130 4.130 19 C -0.075 4.075 20 H 0.097 0.903 21 C -0.203 4.203 22 C -0.065 4.065 23 C -0.130 4.130 24 C -0.139 4.139 25 C -0.150 4.150 26 C -0.140 4.140 27 C -0.138 4.138 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.113 0.887 31 H 0.121 0.879 32 H 0.131 0.869 33 H 0.087 0.913 34 H 0.105 0.895 35 H 0.112 0.888 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.087 0.913 41 H 0.140 0.860 42 H 0.136 0.864 43 H 0.134 0.866 44 H 0.136 0.864 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.240 4.499 11.426 12.282 hybrid contribution 0.125 -0.783 -0.290 0.845 sum -0.115 3.716 11.136 11.740 Atomic orbital electron populations 1.23135 0.77572 1.02826 1.02246 1.86525 1.22660 1.34563 1.84932 1.24788 0.92871 0.81195 0.72253 1.90608 1.66595 1.36248 1.43931 1.21338 0.86772 0.88856 1.04857 1.43424 1.58948 1.08293 1.06806 1.19090 1.40842 0.99462 0.87403 0.87418 1.25350 0.96080 0.98021 0.94733 1.69751 1.39986 1.40816 0.98264 0.87157 0.81281 0.82878 0.79910 1.19700 1.20713 1.17943 1.20575 0.77887 0.89971 0.82731 1.90546 1.56044 1.69224 1.31886 1.21412 1.04114 0.92899 0.97208 1.21395 1.02902 0.92282 0.96463 1.20268 0.98808 0.96569 0.91822 0.90297 1.21900 0.95669 1.01025 1.01668 1.19987 0.94961 0.95711 0.95823 1.21065 0.99329 0.99776 0.92869 1.21128 0.98713 0.97561 0.96482 1.21079 0.96369 0.98421 0.99152 1.21102 0.99217 1.00211 0.93439 1.21116 0.98482 0.97610 0.96562 0.92366 0.92176 0.88733 0.87933 0.86940 0.91310 0.89465 0.88784 0.91504 0.91642 0.93008 0.92611 0.91307 0.85961 0.86370 0.86558 0.86419 0.86146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 10.56 101.05 1.07 1.60 16 2 O -0.37 -6.98 10.57 -39.25 -0.41 -7.39 16 3 C 0.45 9.99 8.02 36.01 0.29 10.28 16 4 O -0.49 -12.11 16.18 -18.75 -0.30 -12.41 16 5 C 0.11 2.40 4.83 -5.19 -0.03 2.38 16 6 N -0.45 -10.90 1.65 -116.09 -0.19 -11.09 16 7 C -0.34 -8.72 9.13 -14.93 -0.14 -8.86 16 8 H 0.11 2.89 7.13 -52.49 -0.37 2.51 16 9 C 0.07 1.69 5.33 -17.47 -0.09 1.60 16 10 N -0.85 -22.99 13.96 55.50 0.77 -22.21 16 11 Si 0.86 19.18 24.96 -169.99 -4.24 14.94 16 12 H -0.27 -5.76 6.70 56.52 0.38 -5.38 16 13 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 14 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 15 C 0.50 11.44 7.62 -10.98 -0.08 11.35 16 16 O -0.59 -14.53 15.54 5.55 0.09 -14.45 16 17 C -0.12 -2.20 4.06 -27.89 -0.11 -2.31 16 18 C -0.09 -1.51 3.71 -26.73 -0.10 -1.61 16 19 C -0.06 -0.76 2.56 -91.77 -0.23 -0.99 16 20 H 0.08 1.04 7.88 -51.92 -0.41 0.63 16 21 C -0.15 -1.79 8.80 37.16 0.33 -1.47 16 22 C -0.06 -0.85 4.78 -104.62 -0.50 -1.35 16 23 C -0.11 -1.41 8.76 -39.58 -0.35 -1.76 16 24 C -0.12 -1.36 10.05 -39.58 -0.40 -1.76 16 25 C -0.13 -1.41 10.05 -39.59 -0.40 -1.81 16 26 C -0.12 -1.34 10.05 -39.58 -0.40 -1.74 16 27 C -0.12 -1.46 9.67 -39.58 -0.38 -1.84 16 28 H 0.06 0.83 8.13 -51.93 -0.42 0.41 16 29 H 0.06 0.88 8.13 -51.93 -0.42 0.46 16 30 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.10 2.28 3.27 -51.93 -0.17 2.11 16 32 H 0.11 2.35 7.36 -51.93 -0.38 1.97 16 33 H 0.28 6.93 8.31 -40.82 -0.34 6.59 16 34 H 0.09 1.65 7.56 -51.92 -0.39 1.25 16 35 H 0.09 1.68 6.77 -51.93 -0.35 1.33 16 36 H 0.07 1.11 7.56 -51.93 -0.39 0.71 16 37 H 0.06 1.18 8.05 -51.93 -0.42 0.76 16 38 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.05 0.66 7.38 -51.93 -0.38 0.28 16 40 H 0.07 0.88 6.63 -51.93 -0.34 0.53 16 41 H 0.12 1.46 7.16 -52.48 -0.38 1.08 16 42 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 43 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 44 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 45 H 0.12 1.31 7.95 -52.49 -0.42 0.89 16 LS Contribution 371.46 15.07 5.60 5.60 Total: -1.00 -30.94 371.46 -6.75 -37.68 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -6.53 Total: 7.63 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: -1.53 Total: 1.70 kcal Atomic # 7 Polarization: -33.89 SS G_CDS: 0.58 Total: -33.31 kcal Atomic # 8 Polarization: -33.62 SS G_CDS: -0.63 Total: -34.25 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -4.24 Total: 14.94 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.94 -6.75 -37.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121944390.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.878 kcal (2) G-P(sol) polarization free energy of solvation -30.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds