Wall clock time and date at job start Tue Mar 31 2020 12:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34228 * 116.99742 * 2 1 4 4 O 1.20822 * 120.00167 * 0.02562 * 3 2 1 5 5 C 1.50707 * 119.99845 * 179.97438 * 3 2 1 6 6 N 1.46502 * 109.47044 * 179.97438 * 5 3 2 7 7 C 1.37092 * 120.00323 * 270.00158 * 6 5 3 8 8 H 1.07997 * 120.00747 * 141.41113 * 7 6 5 9 9 C 1.38956 * 120.00074 * 321.41519 * 7 6 5 10 10 N 1.31404 * 120.00419 * 159.44735 * 9 7 6 11 11 Si 1.86798 * 119.99726 * 339.44956 * 9 7 6 12 12 H 1.48501 * 109.47463 * 95.37422 * 11 9 7 13 13 H 1.48498 * 109.47460 * 215.37501 * 11 9 7 14 14 H 1.48504 * 109.47189 * 335.37523 * 11 9 7 15 15 C 1.34776 * 119.99763 * 90.00282 * 6 5 3 16 16 O 1.21291 * 120.00222 * 5.01502 * 15 6 5 17 17 C 1.50702 * 120.00149 * 185.01680 * 15 6 5 18 18 C 1.52993 * 109.47456 * 174.81404 * 17 15 6 19 19 C 1.53002 * 109.47198 * 184.44934 * 18 17 15 20 20 H 1.09010 * 109.46677 * 54.68797 * 19 18 17 21 21 C 1.52999 * 109.47451 * 294.68550 * 19 18 17 22 22 C 1.50706 * 109.47122 * 174.67964 * 19 18 17 23 23 C 1.38228 * 119.99434 * 59.73094 * 22 19 18 24 24 C 1.38244 * 119.99599 * 179.78611 * 23 22 19 25 25 C 1.38224 * 119.99797 * 0.44179 * 24 23 22 26 26 C 1.38235 * 120.00354 * 359.81205 * 25 24 23 27 27 C 1.38234 * 120.00079 * 359.97438 * 26 25 24 28 28 H 1.08997 * 109.47151 * 300.00131 * 1 2 3 29 29 H 1.09001 * 109.46849 * 60.00066 * 1 2 3 30 30 H 1.08998 * 109.46660 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47069 * 59.99970 * 5 3 2 32 32 H 1.08995 * 109.47352 * 300.00112 * 5 3 2 33 33 H 0.97000 * 120.00131 * 179.97438 * 10 9 7 34 34 H 1.09011 * 109.46960 * 54.80799 * 17 15 6 35 35 H 1.09000 * 109.46815 * 294.82061 * 17 15 6 36 36 H 1.08998 * 109.47074 * 64.45123 * 18 17 15 37 37 H 1.08998 * 109.46844 * 304.45147 * 18 17 15 38 38 H 1.08996 * 109.47273 * 179.14207 * 21 19 18 39 39 H 1.09001 * 109.46638 * 299.14271 * 21 19 18 40 40 H 1.08999 * 109.46821 * 59.13826 * 21 19 18 41 41 H 1.08003 * 120.00349 * 359.97438 * 23 22 19 42 42 H 1.08005 * 119.99589 * 180.27358 * 24 23 22 43 43 H 1.08007 * 120.00113 * 179.83521 * 25 24 23 44 44 H 1.08003 * 120.00525 * 180.02562 * 26 25 24 45 45 H 1.07999 * 120.00418 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9817 2.6798 -0.0002 7 6 4.1765 3.3365 -1.1877 8 1 3.8732 4.3678 -1.2907 9 6 4.7642 2.6750 -2.2591 10 7 4.5962 3.1259 -3.4819 11 14 5.7931 1.1446 -1.9612 12 1 4.9493 -0.0631 -2.1467 13 1 6.9225 1.1121 -2.9248 14 1 6.3256 1.1683 -0.5751 15 6 4.1723 3.3267 1.1667 16 8 4.0890 2.7231 2.2155 17 6 4.4888 4.8001 1.1685 18 6 4.5290 5.3115 2.6099 19 6 4.7402 6.8268 2.6078 20 1 3.9723 7.2998 1.9954 21 6 6.1210 7.1486 2.0328 22 6 4.6494 7.3487 4.0187 23 6 5.5240 6.8863 4.9841 24 6 5.4436 7.3682 6.2774 25 6 4.4828 8.3056 6.6071 26 6 3.6048 8.7641 5.6428 27 6 3.6880 8.2855 4.3486 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 3.9564 0.7806 -0.8891 32 1 3.9557 0.7810 0.8908 33 1 5.0068 2.6643 -4.2297 34 1 3.7199 5.3377 0.6135 35 1 5.4581 4.9640 0.6976 36 1 5.3493 4.8311 3.1431 37 1 3.5868 5.0766 3.1051 38 1 6.2654 8.2289 2.0172 39 1 6.8894 6.6883 2.6539 40 1 6.1920 6.7578 1.0178 41 1 6.2720 6.1508 4.7274 42 1 6.1298 7.0101 7.0306 43 1 4.4182 8.6802 7.6180 44 1 2.8543 9.4969 5.9003 45 1 3.0023 8.6440 3.5951 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121944390.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:41 Heat of formation + Delta-G solvation = -112.262156 kcal Electronic energy + Delta-G solvation = -26815.718356 eV Core-core repulsion = 22990.786011 eV Total energy + Delta-G solvation = -3824.932346 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.75152 -40.68274 -40.17580 -37.69261 -36.94271 -36.55194 -34.02754 -32.45589 -31.73707 -30.62673 -29.56463 -28.01080 -27.03821 -25.73204 -23.81227 -23.19560 -22.38884 -20.98788 -20.63105 -19.20252 -18.89463 -18.37470 -17.63741 -17.42148 -17.15456 -17.03878 -16.51170 -16.19819 -15.85031 -15.56554 -15.00495 -14.83997 -14.66482 -14.50873 -14.29738 -14.27138 -14.10651 -13.85556 -13.55886 -13.44602 -13.08743 -13.00589 -12.91080 -12.65097 -12.41332 -12.34411 -12.06528 -11.91893 -11.84762 -11.80625 -11.71454 -11.48432 -11.33016 -11.17815 -10.60110 -9.91361 -9.76456 -9.53453 -8.53442 -6.20416 0.51432 0.55481 1.09095 1.18292 1.31130 1.41172 1.46706 1.96573 2.14922 2.51760 2.92275 2.96342 3.73438 3.82414 3.87622 3.90882 4.04030 4.15616 4.20086 4.22279 4.27564 4.28566 4.31372 4.38512 4.51637 4.59013 4.60808 4.62065 4.70541 4.76857 4.86199 5.06035 5.08520 5.13603 5.20484 5.23139 5.24797 5.28399 5.41232 5.44220 5.64889 5.67204 5.83081 6.03305 6.13431 6.18771 6.68799 6.88096 7.26877 7.63022 8.60499 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.014264 B = 0.003425 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.553517 B = 8173.024011 C = 9264.236057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.365 6.365 3 C 0.450 3.550 4 O -0.523 6.523 5 C 0.098 3.902 6 N -0.463 5.463 7 C -0.343 4.343 8 H 0.083 0.917 9 C 0.029 3.971 10 N -0.892 5.892 11 Si 0.913 3.087 12 H -0.251 1.251 13 H -0.275 1.275 14 H -0.254 1.254 15 C 0.488 3.512 16 O -0.610 6.610 17 C -0.110 4.110 18 C -0.079 4.079 19 C -0.048 4.048 20 H 0.079 0.921 21 C -0.142 4.142 22 C -0.082 4.082 23 C -0.128 4.128 24 C -0.127 4.127 25 C -0.134 4.134 26 C -0.126 4.126 27 C -0.134 4.134 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.141 0.859 31 H 0.107 0.893 32 H 0.127 0.873 33 H 0.282 0.718 34 H 0.082 0.918 35 H 0.103 0.897 36 H 0.064 0.936 37 H 0.044 0.956 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.122 0.878 42 H 0.138 0.862 43 H 0.143 0.857 44 H 0.141 0.859 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.235 3.886 12.472 13.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.281 6.281 3 C 0.292 3.708 4 O -0.411 6.411 5 C -0.027 4.027 6 N -0.184 5.184 7 C -0.471 4.471 8 H 0.101 0.899 9 C -0.176 4.176 10 N -0.528 5.528 11 Si 0.736 3.264 12 H -0.177 1.177 13 H -0.201 1.201 14 H -0.177 1.177 15 C 0.280 3.720 16 O -0.496 6.496 17 C -0.150 4.150 18 C -0.117 4.117 19 C -0.067 4.067 20 H 0.097 0.903 21 C -0.199 4.199 22 C -0.082 4.082 23 C -0.146 4.146 24 C -0.145 4.145 25 C -0.152 4.152 26 C -0.144 4.144 27 C -0.152 4.152 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.159 0.841 31 H 0.125 0.875 32 H 0.145 0.855 33 H 0.092 0.908 34 H 0.100 0.900 35 H 0.121 0.879 36 H 0.082 0.918 37 H 0.063 0.937 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.140 0.860 42 H 0.156 0.844 43 H 0.161 0.839 44 H 0.159 0.841 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.010 3.874 12.759 13.334 hybrid contribution -0.069 -0.610 -0.650 0.894 sum -0.079 3.264 12.109 12.542 Atomic orbital electron populations 1.23566 0.74842 1.05917 1.02212 1.86491 1.25195 1.32382 1.84078 1.24681 0.92917 0.81648 0.71538 1.90592 1.67284 1.37531 1.45715 1.21453 0.87393 0.88138 1.05689 1.43501 1.59422 1.08989 1.06511 1.18915 1.41138 0.98880 0.88130 0.89938 1.25913 0.96587 1.00929 0.94181 1.69823 1.41123 1.42702 0.99137 0.86324 0.80021 0.80160 0.79855 1.17708 1.20099 1.17729 1.21261 0.77133 0.91375 0.82222 1.90518 1.56790 1.69993 1.32264 1.21430 1.04228 0.90380 0.98937 1.21265 1.01643 0.94474 0.94309 1.20153 0.99529 0.94199 0.92806 0.90284 1.21866 0.95059 1.01848 1.01131 1.19984 0.96026 0.96780 0.95453 1.21204 0.99568 1.00253 0.93619 1.21431 0.99228 0.97499 0.96358 1.21453 0.95604 0.97740 1.00366 1.21430 0.99681 1.00349 0.92932 1.21327 0.98513 0.97773 0.97609 0.92256 0.92473 0.84059 0.87527 0.85500 0.90801 0.89957 0.87871 0.91759 0.93679 0.91790 0.92144 0.92026 0.85996 0.84371 0.83940 0.84142 0.85450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 10.56 113.37 1.20 1.94 16 2 O -0.37 -13.20 10.57 -51.40 -0.54 -13.74 16 3 C 0.45 19.89 8.02 71.24 0.57 20.46 16 4 O -0.52 -26.21 16.18 21.98 0.36 -25.86 16 5 C 0.10 4.34 4.83 85.63 0.41 4.76 16 6 N -0.46 -22.45 1.65 -639.60 -1.06 -23.50 16 7 C -0.34 -17.92 9.13 84.04 0.77 -17.15 16 8 H 0.08 4.62 7.13 -2.91 -0.02 4.60 16 9 C 0.03 1.48 5.33 84.93 0.45 1.93 16 10 N -0.89 -48.55 13.96 21.66 0.30 -48.24 16 11 Si 0.91 38.77 24.96 68.60 1.71 40.48 16 12 H -0.25 -9.88 6.70 99.48 0.67 -9.22 16 13 H -0.28 -11.39 7.11 99.48 0.71 -10.68 16 14 H -0.25 -10.64 7.11 99.48 0.71 -9.93 16 15 C 0.49 22.78 7.62 87.66 0.67 23.44 16 16 O -0.61 -30.14 15.54 -3.06 -0.05 -30.19 16 17 C -0.11 -4.26 4.06 29.85 0.12 -4.14 16 18 C -0.08 -2.64 3.71 30.59 0.11 -2.52 16 19 C -0.05 -1.31 2.56 -11.54 -0.03 -1.34 16 20 H 0.08 2.11 7.88 -2.38 -0.02 2.09 16 21 C -0.14 -3.45 8.80 71.98 0.63 -2.82 16 22 C -0.08 -2.13 4.78 -19.87 -0.09 -2.22 16 23 C -0.13 -3.14 8.76 22.27 0.19 -2.95 16 24 C -0.13 -2.66 10.05 22.27 0.22 -2.43 16 25 C -0.13 -2.56 10.05 22.27 0.22 -2.33 16 26 C -0.13 -2.54 10.05 22.27 0.22 -2.32 16 27 C -0.13 -3.16 9.67 22.27 0.22 -2.95 16 28 H 0.06 1.60 8.13 -2.39 -0.02 1.58 16 29 H 0.06 1.59 8.13 -2.39 -0.02 1.57 16 30 H 0.14 2.49 8.14 -2.39 -0.02 2.47 16 31 H 0.11 4.59 3.27 -2.39 -0.01 4.58 16 32 H 0.13 5.18 7.36 -2.39 -0.02 5.17 16 33 H 0.28 14.18 8.31 -92.71 -0.77 13.41 16 34 H 0.08 3.25 7.56 -2.38 -0.02 3.23 16 35 H 0.10 3.77 6.77 -2.39 -0.02 3.76 16 36 H 0.06 2.16 7.56 -2.39 -0.02 2.14 16 37 H 0.04 1.67 8.05 -2.39 -0.02 1.65 16 38 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.06 1.40 7.38 -2.39 -0.02 1.38 16 40 H 0.06 1.57 6.63 -2.39 -0.02 1.55 16 41 H 0.12 2.88 7.16 -2.91 -0.02 2.86 16 42 H 0.14 2.23 8.06 -2.91 -0.02 2.21 16 43 H 0.14 1.92 8.06 -2.91 -0.02 1.89 16 44 H 0.14 2.10 8.06 -2.91 -0.02 2.08 16 45 H 0.13 2.69 7.95 -2.91 -0.02 2.67 16 Total: -1.00 -66.82 371.46 7.57 -59.25 By element: Atomic # 1 Polarization: 31.48 SS G_CDS: 0.95 Total: 32.43 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: 5.89 Total: 9.37 kcal Atomic # 7 Polarization: -70.99 SS G_CDS: -0.75 Total: -71.75 kcal Atomic # 8 Polarization: -69.55 SS G_CDS: -0.24 Total: -69.79 kcal Atomic # 14 Polarization: 38.77 SS G_CDS: 1.71 Total: 40.48 kcal Total: -66.82 7.57 -59.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121944390.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.008 kcal (2) G-P(sol) polarization free energy of solvation -66.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds