Wall clock time and date at job start Tue Mar 31 2020 13:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 114.00056 * 2 1 4 4 C 1.53002 * 109.47375 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.46990 * 305.00213 * 4 3 2 6 6 C 1.52998 * 109.46970 * 65.00180 * 4 3 2 7 7 C 1.53007 * 109.47138 * 184.99922 * 4 3 2 8 8 N 1.46500 * 109.46992 * 175.00340 * 7 4 3 9 9 C 1.34770 * 120.00149 * 179.97438 * 8 7 4 10 10 O 1.21722 * 119.99697 * 0.02562 * 9 8 7 11 11 C 1.46250 * 120.00046 * 179.97438 * 9 8 7 12 12 C 1.35031 * 119.99722 * 180.02562 * 11 9 8 13 13 C 1.46959 * 119.99896 * 180.27394 * 12 11 9 14 14 C 1.40027 * 120.10017 * 359.45143 * 13 12 11 15 15 C 1.37601 * 119.89863 * 179.78912 * 14 13 12 16 16 C 1.39178 * 120.09610 * 0.48118 * 15 14 13 17 17 O 1.35575 * 119.89259 * 179.76441 * 16 15 14 18 18 C 1.34788 * 116.99533 * 174.42515 * 17 16 15 19 19 H 1.08001 * 120.00124 * 5.05799 * 18 17 16 20 20 C 1.38720 * 119.99795 * 185.06035 * 18 17 16 21 21 N 1.31507 * 119.99773 * 359.97438 * 20 18 17 22 22 Si 1.86791 * 119.99984 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.47157 * 89.99783 * 22 20 18 24 24 H 1.48507 * 109.47385 * 209.99705 * 22 20 18 25 25 H 1.48501 * 109.47369 * 329.99939 * 22 20 18 26 26 C 1.39170 * 120.20621 * 359.74800 * 16 15 14 27 27 C 1.37600 * 120.10262 * 0.02562 * 26 16 15 28 28 H 1.09007 * 109.46861 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47032 * 299.99748 * 1 2 3 30 30 H 1.09003 * 109.46978 * 60.00590 * 1 2 3 31 31 H 1.09009 * 109.47253 * 59.99802 * 3 2 1 32 32 H 1.09000 * 109.47345 * 299.99614 * 3 2 1 33 33 H 1.09000 * 109.47204 * 59.99630 * 6 4 3 34 34 H 1.08992 * 109.47337 * 180.02562 * 6 4 3 35 35 H 1.09008 * 109.47103 * 300.00210 * 6 4 3 36 36 H 1.08993 * 109.46896 * 55.00582 * 7 4 3 37 37 H 1.08995 * 109.46915 * 295.00517 * 7 4 3 38 38 H 0.96999 * 119.99522 * 359.97438 * 8 7 4 39 39 H 1.07990 * 120.00180 * 359.97438 * 11 9 8 40 40 H 1.08000 * 120.00105 * 359.97438 * 12 11 9 41 41 H 1.08005 * 120.04947 * 359.97438 * 14 13 12 42 42 H 1.07995 * 119.95289 * 180.22906 * 15 14 13 43 43 H 0.97004 * 119.99419 * 180.02562 * 21 20 18 44 44 H 1.07998 * 119.95118 * 179.97438 * 26 16 15 45 45 H 1.07997 * 120.05056 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 1 3.8508 0.5685 0.8427 6 6 3.9962 0.5365 -1.3064 7 6 4.1573 2.5770 0.1264 8 7 5.6120 2.4531 0.2470 9 6 6.3746 3.5575 0.3697 10 8 5.8545 4.6580 0.3807 11 6 7.8268 3.4337 0.4906 12 6 8.5907 4.5403 0.6141 13 6 10.0505 4.4162 0.7296 14 6 10.6505 3.1510 0.7234 15 6 12.0180 3.0399 0.8274 16 6 12.8039 4.1821 0.9487 17 8 14.1505 4.0676 1.0557 18 6 14.8639 5.2112 1.0538 19 1 14.3561 6.1644 1.0520 20 6 16.2503 5.1639 1.0542 21 7 16.8685 4.0032 1.0569 22 14 17.2389 6.7487 1.0508 23 1 17.5007 7.1718 2.4500 24 1 18.5299 6.5254 0.3515 25 1 16.4724 7.8089 0.3482 26 6 12.2116 5.4415 0.9601 27 6 10.8452 5.5625 0.8520 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 1.6885 1.8464 0.8900 32 1 1.6887 1.8464 -0.8900 33 1 3.6808 1.1526 -2.1485 34 1 5.0827 0.4500 -1.3058 35 1 3.5532 -0.4554 -1.3960 36 1 3.7603 3.0736 1.0117 37 1 3.9148 3.1645 -0.7592 38 1 6.0263 1.5761 0.2385 39 1 8.2881 2.4573 0.4820 40 1 8.1294 5.5167 0.6231 41 1 10.0410 2.2638 0.6341 42 1 12.4820 2.0647 0.8190 43 1 17.8380 3.9701 1.0575 44 1 12.8253 6.3251 1.0549 45 1 10.3865 6.5402 0.8605 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000149383471.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:49 Heat of formation + Delta-G solvation = -102.512484 kcal Electronic energy + Delta-G solvation = -24545.112328 eV Core-core repulsion = 20720.602760 eV Total energy + Delta-G solvation = -3824.509568 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.93616 -40.64116 -39.18587 -38.48924 -36.91829 -34.72630 -34.05459 -33.68412 -31.95801 -29.87351 -28.25746 -27.83518 -27.36378 -26.05835 -24.27002 -23.63084 -22.03264 -21.59631 -20.57253 -19.71168 -18.84216 -18.23918 -17.70983 -17.00800 -16.71501 -16.47779 -16.28513 -16.19924 -16.05027 -15.72344 -15.60724 -15.27303 -15.00301 -14.66608 -14.56218 -14.11352 -13.93641 -13.65370 -13.59279 -13.32804 -13.24052 -13.13258 -12.70250 -12.56616 -12.46733 -12.20432 -12.12714 -12.08416 -12.02495 -11.68626 -11.20911 -11.10456 -10.99129 -10.61443 -10.57569 -10.06778 -9.88305 -8.67062 -8.51687 -6.17897 -0.23455 0.59428 1.14645 1.36276 1.46287 1.53348 2.15768 2.17793 2.38462 2.87231 2.92513 3.18691 3.43304 3.76343 3.82885 3.91078 3.96640 4.05023 4.09711 4.31929 4.37080 4.42771 4.44766 4.47197 4.49259 4.57773 4.64876 4.67553 4.76679 4.87482 4.89258 4.95611 5.00986 5.03958 5.19562 5.21172 5.29372 5.34363 5.37579 5.48590 5.59967 5.64759 5.82559 5.97898 6.11482 6.21625 6.60386 6.92742 7.28945 7.69805 8.70333 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.043646 B = 0.001607 C = 0.001562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.374779 B =17416.777157 C =17920.726398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.411 6.411 3 C 0.066 3.934 4 C -0.093 4.093 5 H 0.089 0.911 6 C -0.144 4.144 7 C 0.129 3.871 8 N -0.713 5.713 9 C 0.550 3.450 10 O -0.595 6.595 11 C -0.245 4.245 12 C 0.015 3.985 13 C -0.171 4.171 14 C -0.038 4.038 15 C -0.207 4.207 16 C 0.129 3.871 17 O -0.220 6.220 18 C -0.418 4.418 19 H 0.105 0.895 20 C -0.017 4.017 21 N -0.913 5.913 22 Si 1.018 2.982 23 H -0.263 1.263 24 H -0.271 1.271 25 H -0.253 1.253 26 C -0.249 4.249 27 C -0.041 4.041 28 H 0.095 0.905 29 H 0.048 0.952 30 H 0.049 0.951 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.054 0.946 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.416 0.584 39 H 0.152 0.848 40 H 0.125 0.875 41 H 0.161 0.839 42 H 0.123 0.877 43 H 0.275 0.725 44 H 0.124 0.876 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.247 -5.801 -2.680 28.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.330 6.330 3 C -0.011 4.011 4 C -0.112 4.112 5 H 0.108 0.892 6 C -0.201 4.201 7 C 0.005 3.995 8 N -0.365 5.365 9 C 0.341 3.659 10 O -0.479 6.479 11 C -0.266 4.266 12 C -0.005 4.005 13 C -0.171 4.171 14 C -0.055 4.055 15 C -0.226 4.226 16 C 0.077 3.923 17 O -0.125 6.125 18 C -0.493 4.493 19 H 0.123 0.877 20 C -0.216 4.216 21 N -0.550 5.550 22 Si 0.837 3.163 23 H -0.188 1.188 24 H -0.195 1.195 25 H -0.176 1.176 26 C -0.268 4.268 27 C -0.059 4.059 28 H 0.114 0.886 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.253 0.747 39 H 0.170 0.830 40 H 0.142 0.858 41 H 0.178 0.822 42 H 0.141 0.859 43 H 0.084 0.916 44 H 0.142 0.858 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -28.169 -5.519 -2.662 28.828 hybrid contribution 0.824 0.439 0.076 0.937 sum -27.345 -5.080 -2.585 27.933 Atomic orbital electron populations 1.22910 0.79598 1.03755 1.00793 1.87818 1.21241 1.28340 1.95597 1.22484 0.92711 0.84676 1.01254 1.21217 0.93905 0.95343 1.00711 0.89228 1.21788 1.01536 1.01019 0.95748 1.21218 0.79668 0.96771 1.01879 1.45706 1.07279 1.09371 1.74136 1.18513 0.88142 0.83811 0.75384 1.90779 1.75944 1.27941 1.53216 1.22768 0.91540 1.00749 1.11536 1.22171 0.90667 0.99196 0.88444 1.18790 0.92737 0.93347 1.12265 1.21297 0.92410 0.97733 0.94103 1.20425 0.94047 0.96487 1.11613 1.20201 0.84326 0.95271 0.92532 1.83887 1.14221 1.34781 1.79647 1.21902 0.89220 0.84743 1.53477 0.87730 1.26592 0.96679 1.02860 0.95479 1.70150 1.10123 1.27001 1.47745 0.84594 0.77156 0.75235 0.79316 1.18769 1.19549 1.17628 1.21196 0.96276 0.96907 1.12418 1.21318 0.91857 0.98964 0.93726 0.88649 0.93297 0.93269 0.92350 0.92309 0.92704 0.91773 0.91935 0.91858 0.91847 0.74702 0.83010 0.85756 0.82173 0.85921 0.91610 0.85794 0.83813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 113.37 1.25 1.47 16 2 O -0.41 -5.75 10.24 -148.98 -1.53 -7.28 16 3 C 0.07 0.74 5.32 71.98 0.38 1.13 16 4 C -0.09 -1.05 2.66 -10.79 -0.03 -1.08 16 5 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 6 C -0.14 -1.59 8.96 71.98 0.65 -0.94 16 7 C 0.13 1.91 5.06 86.38 0.44 2.35 16 8 N -0.71 -11.64 5.28 -467.51 -2.47 -14.10 16 9 C 0.55 13.15 7.74 86.33 0.67 13.82 16 10 O -0.60 -19.06 16.23 -4.42 -0.07 -19.13 16 11 C -0.25 -5.45 9.41 23.62 0.22 -5.23 16 12 C 0.02 0.40 9.45 23.82 0.23 0.62 16 13 C -0.17 -5.26 5.87 -20.13 -0.12 -5.38 16 14 C -0.04 -1.17 9.40 22.55 0.21 -0.95 16 15 C -0.21 -8.19 9.97 22.34 0.22 -7.96 16 16 C 0.13 6.13 6.66 22.72 0.15 6.28 16 17 O -0.22 -12.77 9.74 -20.39 -0.20 -12.96 16 18 C -0.42 -23.51 9.48 67.94 0.64 -22.87 16 19 H 0.11 5.38 5.18 -2.91 -0.02 5.37 16 20 C -0.02 -0.95 5.49 84.86 0.47 -0.49 16 21 N -0.91 -54.32 13.67 21.62 0.30 -54.02 16 22 Si 1.02 41.46 29.55 68.60 2.03 43.49 16 23 H -0.26 -10.19 7.11 99.48 0.71 -9.49 16 24 H -0.27 -10.63 7.11 99.48 0.71 -9.93 16 25 H -0.25 -9.58 7.11 99.48 0.71 -8.87 16 26 C -0.25 -10.42 9.14 22.34 0.20 -10.22 16 27 C -0.04 -1.37 9.78 22.55 0.22 -1.15 16 28 H 0.10 0.61 8.14 -2.38 -0.02 0.59 16 29 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 32 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.06 0.62 7.18 -2.39 -0.02 0.60 16 35 H 0.06 0.76 7.82 -2.38 -0.02 0.74 16 36 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.42 4.48 7.63 -92.71 -0.71 3.77 16 39 H 0.15 2.51 6.06 -2.92 -0.02 2.49 16 40 H 0.12 3.34 7.52 -2.91 -0.02 3.32 16 41 H 0.16 3.53 6.16 -2.91 -0.02 3.51 16 42 H 0.12 4.71 8.06 -2.91 -0.02 4.69 16 43 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 44 H 0.12 5.26 5.62 -2.91 -0.02 5.24 16 45 H 0.14 3.95 8.06 -2.91 -0.02 3.93 16 Total: -1.00 -73.23 382.34 4.16 -69.07 By element: Atomic # 1 Polarization: 25.25 SS G_CDS: 0.30 Total: 25.54 kcal Atomic # 6 Polarization: -36.41 SS G_CDS: 5.80 Total: -30.60 kcal Atomic # 7 Polarization: -65.96 SS G_CDS: -2.17 Total: -68.13 kcal Atomic # 8 Polarization: -37.58 SS G_CDS: -1.80 Total: -39.37 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.49 kcal Total: -73.23 4.16 -69.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000149383471.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.439 kcal (2) G-P(sol) polarization free energy of solvation -73.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds