Wall clock time and date at job start Tue Mar 31 2020 12:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.71019 * 2 1 4 4 C 1.53706 * 109.83649 * 239.27962 * 2 1 3 5 5 H 1.09003 * 109.65683 * 172.89285 * 4 2 1 6 6 C 1.53003 * 109.44230 * 52.69496 * 4 2 1 7 7 O 1.42957 * 109.15067 * 292.86046 * 4 2 1 8 8 C 1.42968 * 114.16740 * 297.28611 * 7 4 2 9 9 C 1.53300 * 109.22015 * 62.58005 * 8 7 4 10 10 N 1.47150 * 108.38443 * 307.70055 * 9 8 7 11 11 C 1.34772 * 120.98086 * 230.51075 * 10 9 8 12 12 O 1.21288 * 120.00120 * 180.02562 * 11 10 9 13 13 C 1.50699 * 120.00272 * 0.02562 * 11 10 9 14 14 C 1.50701 * 109.47342 * 180.02562 * 13 11 10 15 15 C 1.38303 * 119.92906 * 89.99960 * 14 13 11 16 16 C 1.38108 * 120.06534 * 179.97438 * 15 14 13 17 17 C 1.38877 * 119.93181 * 359.97438 * 16 15 14 18 18 O 1.35747 * 120.06827 * 179.97438 * 17 16 15 19 19 C 1.34822 * 117.00161 * 5.53068 * 18 17 16 20 20 H 1.08004 * 120.00204 * 354.94245 * 19 18 17 21 21 C 1.38654 * 120.00200 * 174.94014 * 19 18 17 22 22 N 1.31553 * 119.99993 * 359.72918 * 21 19 18 23 23 Si 1.86806 * 120.00148 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46984 * 269.72940 * 23 21 19 25 25 H 1.48494 * 109.46924 * 29.72745 * 23 21 19 26 26 H 1.48496 * 109.47216 * 149.72739 * 23 21 19 27 27 C 1.38884 * 119.86025 * 0.25082 * 17 16 15 28 28 C 1.38097 * 119.93210 * 359.49481 * 27 17 16 29 29 H 1.08999 * 109.46815 * 299.46338 * 1 2 3 30 30 H 1.08991 * 109.46900 * 59.46841 * 1 2 3 31 31 H 1.09000 * 109.47187 * 179.46677 * 1 2 3 32 32 H 1.08994 * 109.47232 * 300.38473 * 6 4 2 33 33 H 1.09007 * 109.47004 * 60.38805 * 6 4 2 34 34 H 1.09001 * 109.47281 * 180.38283 * 6 4 2 35 35 H 1.09005 * 109.50938 * 302.65970 * 8 7 4 36 36 H 1.08990 * 109.55752 * 182.53340 * 8 7 4 37 37 H 1.09000 * 109.68086 * 187.98032 * 9 8 7 38 38 H 1.08997 * 109.67763 * 67.42381 * 9 8 7 39 39 H 1.08991 * 109.47054 * 59.99786 * 13 11 10 40 40 H 1.09003 * 109.46999 * 299.99778 * 13 11 10 41 41 H 1.07995 * 119.96803 * 359.95243 * 15 14 13 42 42 H 1.07998 * 120.03431 * 180.02562 * 16 15 14 43 43 H 0.97007 * 120.00140 * 0.27194 * 22 21 19 44 44 H 1.07997 * 120.03119 * 179.72764 * 27 17 16 45 45 H 1.08003 * 119.96612 * 180.23034 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8977 1.0262 0.0000 4 6 2.0516 -0.7386 -1.2430 5 1 3.1342 -0.6291 -1.3072 6 6 1.4019 -0.1484 -2.4961 7 8 1.7173 -2.1247 -1.1396 8 6 2.3218 -2.7913 -0.0287 9 6 1.8190 -2.1587 1.2741 10 7 2.0256 -0.7040 1.1935 11 6 2.6454 -0.0353 2.1860 12 8 2.8059 1.1640 2.1013 13 6 3.1391 -0.7775 3.4010 14 6 3.7889 0.1933 4.3531 15 6 3.0305 0.8166 5.3273 16 6 3.6232 1.7063 6.2017 17 6 4.9822 1.9744 6.1022 18 8 5.5675 2.8489 6.9598 19 6 4.8004 3.3355 7.9560 20 1 3.7492 3.0910 7.9969 21 6 5.3610 4.1500 8.9281 22 7 6.6425 4.4435 8.8814 23 14 4.2979 4.8249 10.3080 24 1 3.7296 6.1346 9.8996 25 1 3.1940 3.8734 10.5929 26 1 5.1252 5.0030 11.5283 27 6 5.7401 1.3504 5.1198 28 6 5.1426 0.4577 4.2519 29 1 -0.3633 0.5055 0.8948 30 1 -0.3633 0.5220 -0.8851 31 1 -0.3633 -1.0276 -0.0096 32 1 0.3194 -0.2566 -2.4295 33 1 1.6573 0.9085 -2.5744 34 1 1.7663 -0.6763 -3.3774 35 1 3.4054 -2.6892 -0.0885 36 1 2.0542 -3.8477 -0.0474 37 1 2.3782 -2.5627 2.1180 38 1 0.7577 -2.3723 1.4001 39 1 3.8663 -1.5301 3.0964 40 1 2.2986 -1.2638 3.8961 41 1 1.9738 0.6077 5.4042 42 1 3.0306 2.1925 6.9625 43 1 7.1945 4.0933 8.1646 44 1 6.7962 1.5601 5.0372 45 1 5.7322 -0.0307 3.4901 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000167506425.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:52 Heat of formation + Delta-G solvation = -85.028957 kcal Electronic energy + Delta-G solvation = -26655.916734 eV Core-core repulsion = 22832.165308 eV Total energy + Delta-G solvation = -3823.751425 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.78016 -39.23742 -38.46674 -36.60407 -35.06798 -34.21260 -32.47602 -31.32063 -30.20091 -29.24553 -29.08900 -26.70534 -24.99031 -24.48252 -23.74264 -21.93926 -21.44375 -20.28085 -18.96381 -18.34703 -17.45178 -17.06265 -16.77778 -16.31411 -15.65433 -15.63116 -15.17621 -14.79224 -14.49274 -14.03939 -13.90110 -13.69210 -13.64640 -13.55776 -13.29686 -13.07692 -13.02623 -12.66192 -12.57389 -12.22919 -12.07666 -11.91087 -11.73391 -11.37098 -11.21129 -11.05284 -10.86165 -10.81138 -10.73329 -10.37596 -10.30418 -10.26145 -9.69974 -9.38124 -8.74485 -8.72961 -8.19644 -7.21971 -6.75051 -4.03723 2.18651 2.20434 2.66036 2.75984 3.25034 3.31305 3.32796 3.44703 4.13378 4.23171 4.37917 4.53544 4.58395 4.66222 4.72862 4.86898 4.92494 5.02556 5.10990 5.11597 5.14831 5.19379 5.21722 5.25798 5.36011 5.40223 5.43748 5.54809 5.59487 5.63045 5.68323 5.78992 5.82229 5.95110 6.16802 6.28538 6.37106 6.64035 6.76917 6.85195 7.06351 7.23702 7.23951 7.34022 7.59412 7.75486 8.19484 8.42540 8.94516 9.63733 10.69131 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.028984 B = 0.002403 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.830726 B =11648.398483 C =11847.167021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.108 3.892 3 H 0.106 0.894 4 C 0.080 3.920 5 H 0.063 0.937 6 C -0.146 4.146 7 O -0.376 6.376 8 C 0.048 3.952 9 C 0.072 3.928 10 N -0.622 5.622 11 C 0.514 3.486 12 O -0.518 6.518 13 C -0.078 4.078 14 C -0.169 4.169 15 C -0.056 4.056 16 C -0.228 4.228 17 C 0.160 3.840 18 O -0.203 6.203 19 C -0.471 4.471 20 H 0.084 0.916 21 C 0.009 3.991 22 N -0.883 5.883 23 Si 1.099 2.901 24 H -0.281 1.281 25 H -0.283 1.283 26 H -0.275 1.275 27 C -0.194 4.194 28 C -0.059 4.059 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.056 0.944 36 H 0.106 0.894 37 H 0.097 0.903 38 H 0.076 0.924 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.104 0.896 42 H 0.128 0.872 43 H 0.282 0.718 44 H 0.115 0.885 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.479 -15.609 -18.682 26.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.005 3.995 3 H 0.124 0.876 4 C 0.021 3.979 5 H 0.081 0.919 6 C -0.204 4.204 7 O -0.295 6.295 8 C -0.030 4.030 9 C -0.052 4.052 10 N -0.359 5.359 11 C 0.303 3.697 12 O -0.391 6.391 13 C -0.118 4.118 14 C -0.170 4.170 15 C -0.074 4.074 16 C -0.247 4.247 17 C 0.107 3.893 18 O -0.107 6.107 19 C -0.547 4.547 20 H 0.101 0.899 21 C -0.196 4.196 22 N -0.515 5.515 23 Si 0.923 3.077 24 H -0.207 1.207 25 H -0.208 1.208 26 H -0.201 1.201 27 C -0.213 4.213 28 C -0.077 4.077 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.124 0.876 37 H 0.115 0.885 38 H 0.094 0.906 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.122 0.878 42 H 0.145 0.855 43 H 0.092 0.908 44 H 0.133 0.867 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -11.203 -13.949 -17.407 24.961 hybrid contribution -0.050 -0.988 -1.222 1.573 sum -11.252 -14.937 -18.629 26.397 Atomic orbital electron populations 1.22066 0.94391 1.02601 1.02417 1.21903 0.95104 0.98162 0.84367 0.87606 1.22563 0.98787 0.81680 0.94835 0.91948 1.21835 1.01950 1.00756 0.95840 1.87942 1.72041 1.22024 1.47450 1.22963 0.97479 0.97034 0.85482 1.22416 1.02474 0.80775 0.99489 1.48367 1.59592 1.07828 1.20085 1.21088 0.76856 0.88085 0.83658 1.90738 1.55118 1.14646 1.78636 1.20435 1.00994 0.97649 0.92714 1.18649 0.93981 1.04379 1.00008 1.20518 0.97806 0.95107 0.93977 1.21118 0.95173 1.04409 1.04005 1.19231 0.91358 0.88524 0.90227 1.83659 1.39900 1.50844 1.36287 1.22241 0.94179 1.33429 1.04868 0.89861 1.26538 0.98464 0.94963 0.99628 1.70539 1.05296 1.41580 1.34044 0.83051 0.73863 0.76261 0.74500 1.20705 1.20838 1.20052 1.20129 0.99535 1.02497 0.99157 1.20375 0.93729 0.96681 0.96948 0.92304 0.91140 0.91887 0.91107 0.90685 0.91552 0.92594 0.87621 0.88500 0.90562 0.89026 0.88966 0.87760 0.85456 0.90777 0.86697 0.87384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.40 8.64 37.16 0.32 -1.08 16 2 C 0.11 1.12 2.86 -67.20 -0.19 0.92 16 3 H 0.11 1.31 7.08 -51.93 -0.37 0.94 16 4 C 0.08 0.70 3.12 -26.36 -0.08 0.62 16 5 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 6 C -0.15 -1.00 9.03 37.16 0.34 -0.67 16 7 O -0.38 -3.36 10.01 -35.23 -0.35 -3.71 16 8 C 0.05 0.33 6.99 37.31 0.26 0.59 16 9 C 0.07 0.53 6.14 -3.53 -0.02 0.50 16 10 N -0.62 -6.75 2.71 -164.49 -0.45 -7.20 16 11 C 0.51 7.34 7.70 -10.99 -0.08 7.26 16 12 O -0.52 -9.88 15.50 5.55 0.09 -9.80 16 13 C -0.08 -0.99 4.20 -29.03 -0.12 -1.12 16 14 C -0.17 -2.98 4.38 -104.57 -0.46 -3.44 16 15 C -0.06 -1.08 9.69 -39.61 -0.38 -1.47 16 16 C -0.23 -5.24 9.17 -39.39 -0.36 -5.60 16 17 C 0.16 4.03 6.65 -39.11 -0.26 3.77 16 18 O -0.20 -5.89 9.16 0.08 0.00 -5.89 16 19 C -0.47 -13.61 9.49 30.89 0.29 -13.31 16 20 H 0.08 2.27 5.20 -52.48 -0.27 2.00 16 21 C 0.01 0.26 5.49 -17.52 -0.10 0.17 16 22 N -0.88 -26.83 13.70 55.48 0.76 -26.07 16 23 Si 1.10 24.21 29.92 -169.99 -5.09 19.13 16 24 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 25 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 26 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 27 C -0.19 -4.26 9.99 -39.39 -0.39 -4.66 16 28 C -0.06 -1.10 9.69 -39.61 -0.38 -1.49 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.52 6.45 -51.93 -0.33 0.19 16 31 H 0.06 0.54 7.21 -51.93 -0.37 0.16 16 32 H 0.07 0.46 6.37 -51.93 -0.33 0.13 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.10 0.55 6.05 -51.93 -0.31 0.24 16 38 H 0.08 0.51 7.65 -51.93 -0.40 0.11 16 39 H 0.09 0.92 7.60 -51.93 -0.39 0.53 16 40 H 0.09 0.96 7.96 -51.93 -0.41 0.55 16 41 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16 42 H 0.13 2.95 5.64 -52.49 -0.30 2.66 16 43 H 0.28 8.78 7.97 -40.82 -0.33 8.45 16 44 H 0.11 2.40 8.06 -52.49 -0.42 1.98 16 45 H 0.11 1.68 8.06 -52.48 -0.42 1.26 16 LS Contribution 363.76 15.07 5.48 5.48 Total: -1.00 -35.04 363.76 -7.61 -42.64 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -6.42 Total: 4.41 kcal Atomic # 6 Polarization: -17.37 SS G_CDS: -1.63 Total: -19.00 kcal Atomic # 7 Polarization: -33.59 SS G_CDS: 0.31 Total: -33.27 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -0.27 Total: -19.39 kcal Atomic # 14 Polarization: 24.21 SS G_CDS: -5.09 Total: 19.13 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -35.04 -7.61 -42.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167506425.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.386 kcal (2) G-P(sol) polarization free energy of solvation -35.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds